Wall clock time and date at job start Tue Mar 31 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 C 1.53000 * 109.47113 * 239.99574 * 2 1 3 5 5 N 1.46502 * 109.46818 * 119.99964 * 2 1 3 6 6 C 1.35843 * 126.06183 * 75.30399 * 5 2 1 7 7 C 1.35726 * 107.56464 * 180.17993 * 6 5 2 8 8 N 1.40845 * 126.07676 * 179.83931 * 7 6 5 9 9 C 1.34777 * 119.99873 * 179.71450 * 8 7 6 10 10 O 1.21597 * 120.00423 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99964 * 180.02562 * 9 8 7 12 12 C 1.46493 * 119.99864 * 179.73002 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47325 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00025 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00011 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00044 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47644 * 89.99599 * 18 16 14 20 20 H 1.48501 * 109.47120 * 209.99938 * 18 16 14 21 21 H 1.48499 * 109.46888 * 329.99550 * 18 16 14 22 22 C 1.40235 * 107.84792 * 359.58067 * 7 6 5 23 23 N 1.30840 * 108.34470 * 0.26385 * 22 7 6 24 24 H 1.09007 * 109.47204 * 300.00259 * 1 2 3 25 25 H 1.09000 * 109.47165 * 59.99954 * 1 2 3 26 26 H 1.08995 * 109.47647 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46559 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47281 * 299.99517 * 3 2 1 29 29 H 1.09000 * 109.47562 * 60.00107 * 3 2 1 30 30 H 1.09009 * 109.46992 * 300.00437 * 4 2 1 31 31 H 1.09000 * 109.46721 * 60.00199 * 4 2 1 32 32 H 1.08998 * 109.47223 * 180.02562 * 4 2 1 33 33 H 1.08003 * 126.21955 * 0.02745 * 6 5 2 34 34 H 0.96996 * 120.00239 * 359.72083 * 8 7 6 35 35 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 36 36 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 37 37 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 38 38 H 1.09007 * 109.46593 * 299.99743 * 13 12 11 39 39 H 1.08993 * 109.47372 * 59.99485 * 13 12 11 40 40 H 0.97000 * 120.00268 * 180.02562 * 17 16 14 41 41 H 1.08000 * 125.83182 * 180.22343 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0221 -2.0339 1.3985 7 6 2.5504 -2.2615 2.6278 8 7 2.7334 -3.5207 3.2317 9 6 3.2779 -3.6054 4.4617 10 8 3.6107 -2.5948 5.0503 11 7 3.4535 -4.8104 5.0394 12 6 4.0508 -4.9028 6.3739 13 6 4.1368 -6.3717 6.7935 14 6 4.7506 -6.4668 8.1666 15 1 5.0498 -5.5693 8.6876 16 6 4.9302 -7.6994 8.7576 17 7 5.4663 -7.7824 9.9556 18 14 4.4133 -9.2517 7.8560 19 1 5.5496 -9.7532 7.0421 20 1 4.0157 -10.2879 8.8426 21 1 3.2635 -8.9479 6.9667 22 6 2.8871 -1.0205 3.1874 23 7 2.5689 -0.0831 2.3319 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7491 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7218 -1.2490 33 1 1.6669 -2.7843 0.7077 34 1 2.4677 -4.3269 2.7624 35 1 3.1884 -5.6166 4.5697 36 1 5.0517 -4.4717 6.3547 37 1 3.4334 -4.3564 7.0870 38 1 3.1360 -6.8032 6.8126 39 1 4.7543 -6.9177 6.0804 40 1 5.5929 -8.6496 10.3712 41 1 3.3323 -0.8650 4.1590 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345252805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:10 Heat of formation + Delta-G solvation = 17.082316 kcal Electronic energy + Delta-G solvation = -21218.637581 eV Core-core repulsion = 17941.315346 eV Total energy + Delta-G solvation = -3277.322235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.40078 -40.84572 -37.79705 -36.64787 -35.51224 -34.73964 -32.03056 -31.52163 -29.62436 -28.29895 -28.17878 -26.63137 -23.68277 -23.09054 -22.42028 -21.45983 -20.46925 -19.12945 -18.70852 -18.19683 -16.97245 -16.80629 -16.28591 -16.14675 -15.70632 -15.63912 -15.18424 -15.10538 -14.77346 -14.56364 -14.52002 -13.78829 -13.32343 -13.21069 -13.13568 -13.09370 -13.03756 -12.69550 -12.30028 -12.16722 -12.13416 -12.12388 -11.74495 -11.67866 -11.56791 -11.49630 -11.16709 -10.76460 -10.29089 -10.07852 -8.60352 -8.27423 -6.34690 0.88152 1.36735 1.41291 1.44316 1.55487 1.63796 1.83796 2.39402 2.41032 3.07732 3.33981 3.53221 3.82331 3.91565 3.94129 4.13446 4.35872 4.48813 4.53804 4.57615 4.65856 4.71850 4.75570 4.79183 4.84777 4.87609 4.88764 5.09930 5.13755 5.23326 5.29249 5.34476 5.45059 5.48060 5.69028 5.87124 6.02218 6.21181 6.25978 6.72261 6.73802 7.13768 7.29625 7.58809 8.89458 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.048619 B = 0.002644 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.772899 B =10588.795559 C =10962.893414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 C -0.143 4.143 4 C -0.154 4.154 5 N -0.357 5.357 6 C 0.035 3.965 7 C 0.001 3.999 8 N -0.642 5.642 9 C 0.698 3.302 10 O -0.624 6.624 11 N -0.725 5.725 12 C 0.165 3.835 13 C -0.011 4.011 14 C -0.538 4.538 15 H 0.028 0.972 16 C 0.002 3.998 17 N -0.952 5.952 18 Si 0.961 3.039 19 H -0.265 1.265 20 H -0.288 1.288 21 H -0.234 1.234 22 C 0.021 3.979 23 N -0.311 5.311 24 H 0.044 0.956 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.217 0.783 34 H 0.425 0.575 35 H 0.412 0.588 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.267 0.733 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.849 10.086 -30.220 34.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.093 3.907 3 C -0.201 4.201 4 C -0.212 4.212 5 N -0.144 5.144 6 C -0.114 4.114 7 C -0.104 4.104 8 N -0.292 5.292 9 C 0.398 3.602 10 O -0.505 6.505 11 N -0.380 5.380 12 C 0.041 3.959 13 C -0.049 4.049 14 C -0.577 4.577 15 H 0.046 0.954 16 C -0.195 4.195 17 N -0.592 5.592 18 Si 0.783 3.217 19 H -0.190 1.190 20 H -0.215 1.215 21 H -0.157 1.157 22 C -0.164 4.164 23 N -0.134 5.134 24 H 0.064 0.936 25 H 0.122 0.878 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.263 0.737 35 H 0.249 0.751 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.553 12.163 -29.861 34.600 hybrid contribution 0.199 -2.071 0.735 2.206 sum -12.354 10.092 -29.126 33.208 Atomic orbital electron populations 1.22260 0.91663 1.03744 1.03621 1.21114 0.95277 0.93537 0.80798 1.21922 1.01249 0.93420 1.03464 1.22254 1.01650 1.01865 0.95470 1.49070 1.47396 1.03948 1.13945 1.22239 1.04605 0.87707 0.96799 1.17665 1.11959 0.85597 0.95216 1.41542 1.64683 1.07162 1.15830 1.16028 0.78836 0.84044 0.81265 1.90785 1.58525 1.35926 1.65236 1.45027 1.66687 1.06775 1.19537 1.20901 0.96178 0.98022 0.80848 1.19647 0.97751 0.92519 0.95015 1.21264 1.41131 0.93467 1.01835 0.95363 1.26111 0.94364 1.03446 0.95602 1.70082 1.45864 1.26225 1.17048 0.85509 0.80277 0.77240 0.78644 1.19025 1.21456 1.15700 1.24275 1.01820 0.90015 1.00339 1.77287 1.18343 1.22565 0.95185 0.93648 0.87800 0.90951 0.93187 0.88024 0.93035 0.90165 0.87680 0.92718 0.76627 0.73731 0.75107 0.93946 0.93927 0.94323 0.94452 0.92383 0.80592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.74 71.98 0.63 -0.77 16 2 C 0.17 2.15 1.24 3.60 0.00 2.16 16 3 C -0.14 -1.91 8.09 71.98 0.58 -1.33 16 4 C -0.15 -1.03 8.29 71.98 0.60 -0.43 16 5 N -0.36 -7.24 3.45 -306.78 -1.06 -8.30 16 6 C 0.04 0.63 10.67 83.49 0.89 1.52 16 7 C 0.00 0.02 6.90 37.59 0.26 0.28 16 8 N -0.64 -15.18 5.48 -317.70 -1.74 -16.92 16 9 C 0.70 23.06 8.54 179.05 1.53 24.59 16 10 O -0.62 -26.40 13.50 -4.02 -0.05 -26.45 16 11 N -0.72 -22.53 5.56 -478.51 -2.66 -25.19 16 12 C 0.16 6.74 5.61 86.38 0.48 7.23 16 13 C -0.01 -0.50 4.16 29.85 0.12 -0.38 16 14 C -0.54 -30.76 9.66 25.60 0.25 -30.51 16 15 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 16 C 0.00 0.09 5.47 84.65 0.46 0.56 16 17 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 18 Si 0.96 42.00 27.47 68.60 1.88 43.89 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.23 -8.97 6.54 99.48 0.65 -8.32 16 22 C 0.02 0.69 10.84 85.33 0.92 1.62 16 23 N -0.31 -9.08 11.65 -56.78 -0.66 -9.74 16 24 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 25 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.91 8.04 -2.39 -0.02 0.89 16 30 H 0.08 0.32 7.38 -2.38 -0.02 0.30 16 31 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.22 1.65 7.57 -2.91 -0.02 1.63 16 34 H 0.42 6.09 8.84 -92.71 -0.82 5.27 16 35 H 0.41 9.47 8.49 -92.71 -0.79 8.68 16 36 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.04 1.59 7.20 -2.38 -0.02 1.57 16 39 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.18 6.69 5.91 -2.91 -0.02 6.67 16 Total: -1.00 -79.73 340.60 2.12 -77.61 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.62 Total: 19.89 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.74 Total: 4.52 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -5.82 Total: -119.46 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.05 Total: -26.45 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.89 kcal Total: -79.73 2.12 -77.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345252805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.696 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds