Wall clock time and date at job start Tue Mar 31 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.53005 * 109.46982 * 240.00261 * 2 1 3 5 5 C 1.50695 * 109.47088 * 59.99767 * 4 2 1 6 6 H 1.08003 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99882 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47245 * 89.99518 * 9 7 5 11 11 H 1.48501 * 109.47507 * 209.99538 * 9 7 5 12 12 H 1.48499 * 109.47170 * 329.99678 * 9 7 5 13 13 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 14 14 N 1.46497 * 109.46983 * 300.00028 * 13 2 1 15 15 C 1.34780 * 119.99566 * 180.02562 * 14 13 2 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 15 20 20 C 1.34429 * 126.82317 * 124.99905 * 19 18 17 21 21 N 1.30829 * 108.07648 * 179.97438 * 20 19 18 22 22 C 1.33237 * 109.83001 * 359.97438 * 21 20 19 23 23 N 1.30711 * 108.94762 * 359.75128 * 22 21 20 24 24 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 25 25 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 26 26 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 29 29 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 30 30 H 1.08998 * 109.47061 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46668 * 300.00213 * 4 2 1 32 32 H 0.96996 * 119.99885 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46832 * 179.97438 * 13 2 1 34 34 H 1.09002 * 109.47153 * 60.00035 * 13 2 1 35 35 H 0.96995 * 120.00423 * 359.97438 * 14 13 2 36 36 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 37 37 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 38 38 H 1.09002 * 109.47153 * 299.99998 * 18 17 15 39 39 H 1.08998 * 109.47533 * 59.99628 * 18 17 15 40 40 H 1.08006 * 125.96400 * 359.97438 * 20 19 18 41 41 H 1.08005 * 125.52945 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2481 0.3988 -5.2572 10 1 2.2270 1.4398 -5.6614 11 1 1.0824 -0.5802 -6.3614 12 1 -0.0595 1.0373 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4453 15 6 1.8777 -0.4908 3.6695 16 8 2.5750 -1.4769 3.7808 17 6 1.3749 0.2193 4.8999 18 6 1.8850 -0.5019 6.1492 19 7 1.3968 0.1887 7.3454 20 6 0.6996 -0.3519 8.3596 21 7 0.4547 0.5916 9.2322 22 6 0.9778 1.7427 8.8120 23 7 1.5700 1.5456 7.6636 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7216 -1.2491 31 1 1.6766 -1.7489 -1.2493 32 1 2.8607 -1.8828 -4.7337 33 1 3.1300 -0.7216 1.2489 34 1 1.6767 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 1.7375 1.2472 4.8999 37 1 0.2849 0.2185 4.9000 38 1 1.5221 -1.5297 6.1490 39 1 2.9750 -0.5015 6.1494 40 1 0.3947 -1.3849 8.4401 41 1 0.9252 2.6849 9.3375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359757161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:28 Heat of formation + Delta-G solvation = 12.682303 kcal Electronic energy + Delta-G solvation = -21272.893307 eV Core-core repulsion = 17995.380273 eV Total energy + Delta-G solvation = -3277.513034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.97178 -40.95886 -38.73705 -35.82005 -35.25197 -33.95501 -32.16549 -31.60404 -29.11271 -27.96442 -27.82927 -25.86678 -24.55460 -22.89242 -22.48262 -21.33661 -19.84931 -18.65806 -18.37349 -17.50719 -17.12677 -16.83617 -16.48010 -16.28879 -15.77186 -15.50584 -15.02233 -14.91572 -14.67575 -14.48841 -14.25171 -13.94105 -13.71463 -13.54511 -13.03190 -12.86699 -12.72769 -12.59134 -12.33796 -12.26042 -12.22715 -11.98351 -11.53788 -11.25543 -11.02553 -10.91208 -10.85052 -10.75947 -10.60848 -10.51668 -10.07632 -8.14613 -6.22138 0.70713 1.31708 1.42278 1.42515 1.52699 1.58889 2.03772 2.25829 2.44729 3.20021 3.48889 3.56264 3.65474 3.86192 3.98902 4.08355 4.15991 4.22578 4.22837 4.37723 4.67492 4.68769 4.73577 4.78523 4.80737 4.96126 5.10631 5.12460 5.29623 5.39042 5.46308 5.50160 5.50508 5.53986 5.57100 5.80225 5.89639 5.89982 6.29953 6.53813 6.93277 7.14244 7.20996 7.45676 8.97796 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.048546 B = 0.002616 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.637728 B =10700.969038 C =10969.932950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.072 0.928 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.260 1.260 13 C 0.141 3.859 14 N -0.709 5.709 15 C 0.516 3.484 16 O -0.585 6.585 17 C -0.137 4.137 18 C 0.147 3.853 19 N -0.383 5.383 20 C 0.262 3.738 21 N -0.579 5.579 22 C 0.193 3.807 23 N -0.351 5.351 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.070 0.930 30 H -0.014 1.014 31 H -0.013 1.013 32 H 0.259 0.741 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.414 0.586 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.257 0.743 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 5.711 21.908 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.090 0.910 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.184 1.184 13 C 0.017 3.983 14 N -0.361 5.361 15 C 0.303 3.697 16 O -0.466 6.466 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.173 5.173 20 C -0.034 4.034 21 N -0.307 5.307 22 C -0.110 4.110 23 N -0.179 5.179 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.004 0.996 31 H 0.006 0.994 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.252 0.748 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.105 0.895 40 H 0.273 0.727 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -5.514 5.395 21.673 23.004 hybrid contribution 0.011 0.045 -1.481 1.481 sum -5.502 5.440 20.192 21.624 Atomic orbital electron populations 1.21699 0.93560 1.01036 1.01625 1.20702 0.96704 0.96191 0.92920 1.21706 0.99898 0.94779 1.01635 1.18984 0.94283 0.94275 0.92363 1.21591 1.30358 1.12022 0.91105 0.91010 1.25940 0.95735 0.95861 1.02703 1.70116 1.38814 1.24938 1.24073 0.85559 0.79165 0.78120 0.78882 1.20246 1.21597 1.18369 1.21211 0.97819 0.95471 0.83793 1.45993 1.53039 1.32122 1.04951 1.20817 0.79634 0.84037 0.85253 1.90722 1.39988 1.28400 1.87443 1.21754 1.04333 1.01552 0.90089 1.21577 1.00804 0.95866 0.79198 1.50654 1.41378 1.06731 1.18562 1.26913 0.91154 1.01841 0.83512 1.70587 1.28381 1.00249 1.31468 1.26577 0.93851 0.99134 0.91431 1.77995 1.26352 0.94601 1.18974 0.91067 0.92793 0.94272 0.94481 0.92711 0.91123 0.99598 0.99435 0.93189 0.93543 0.93192 0.74833 0.87018 0.86218 0.85156 0.89452 0.72711 0.74432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 8.05 71.98 0.58 -3.27 16 2 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 3 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 4 C 0.04 1.91 4.04 29.85 0.12 2.03 16 5 C -0.51 -26.95 7.65 25.60 0.20 -26.76 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.52 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 8 N -0.94 -56.41 13.29 21.45 0.28 -56.13 16 9 Si 0.96 43.07 29.54 68.60 2.03 45.09 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 13 C 0.14 4.64 4.56 86.38 0.39 5.03 16 14 N -0.71 -16.76 4.96 -463.06 -2.30 -19.06 16 15 C 0.52 11.89 7.83 87.66 0.69 12.58 16 16 O -0.58 -18.30 15.98 -3.03 -0.05 -18.35 16 17 C -0.14 -1.99 5.92 29.85 0.18 -1.82 16 18 C 0.15 2.08 5.84 86.38 0.50 2.59 16 19 N -0.38 -6.04 3.69 -352.06 -1.30 -7.34 16 20 C 0.26 3.48 12.63 180.36 2.28 5.75 16 21 N -0.58 -10.46 11.19 -204.00 -2.28 -12.74 16 22 C 0.19 3.29 13.03 180.77 2.36 5.64 16 23 N -0.35 -6.88 12.58 -61.25 -0.77 -7.65 16 24 H 0.07 1.63 6.86 -2.38 -0.02 1.62 16 25 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 29 H 0.07 1.67 6.86 -2.39 -0.02 1.65 16 30 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.41 7.46 6.16 -92.71 -0.57 6.89 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.13 1.36 8.04 -2.39 -0.02 1.34 16 39 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.26 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.24 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -73.57 340.63 4.38 -69.19 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.46 Total: 10.74 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 8.30 Total: -3.77 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -6.36 Total: -102.90 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.05 Total: -18.35 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -73.57 4.38 -69.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359757161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.872 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds