Wall clock time and date at job start Tue Mar 31 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46947 * 2 1 4 4 C 1.52994 * 109.46996 * 240.00028 * 2 1 3 5 5 C 1.50698 * 109.47387 * 60.00099 * 4 2 1 6 6 H 1.07994 * 119.99889 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00080 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00272 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47115 * 90.00279 * 9 7 5 11 11 H 1.48494 * 109.47505 * 209.99966 * 9 7 5 12 12 H 1.48497 * 109.47081 * 330.00200 * 9 7 5 13 13 C 1.52996 * 109.46705 * 120.00104 * 2 1 3 14 14 N 1.46498 * 109.47270 * 299.99789 * 13 2 1 15 15 C 1.34783 * 120.00381 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99295 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00127 * 180.02562 * 15 14 13 18 18 C 1.53004 * 109.46917 * 179.97438 * 17 15 14 19 19 N 1.46498 * 109.47171 * 179.97438 * 18 17 15 20 20 C 1.35308 * 125.86965 * 124.99697 * 19 18 17 21 21 C 1.35347 * 106.17713 * 179.97438 * 20 19 18 22 22 N 1.33774 * 106.49812 * 0.02562 * 21 20 19 23 23 N 1.28637 * 108.88333 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47447 * 300.00119 * 1 2 3 25 25 H 1.09004 * 109.47040 * 59.99817 * 1 2 3 26 26 H 1.08996 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46478 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47593 * 299.99674 * 3 2 1 29 29 H 1.08997 * 109.47193 * 60.00251 * 3 2 1 30 30 H 1.09006 * 109.47093 * 180.02562 * 4 2 1 31 31 H 1.09009 * 109.47142 * 299.99903 * 4 2 1 32 32 H 0.96996 * 120.00576 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47296 * 180.02562 * 13 2 1 34 34 H 1.08996 * 109.47550 * 59.99797 * 13 2 1 35 35 H 0.97003 * 120.00071 * 0.02562 * 14 13 2 36 36 H 1.08995 * 109.47077 * 59.99566 * 17 15 14 37 37 H 1.08996 * 109.46865 * 299.99656 * 17 15 14 38 38 H 1.09002 * 109.46649 * 59.99907 * 18 17 15 39 39 H 1.09000 * 109.47178 * 300.00184 * 18 17 15 40 40 H 1.07997 * 126.91159 * 359.97438 * 20 19 18 41 41 H 1.08002 * 126.75518 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4325 0.1380 -4.8057 9 14 2.9463 -1.9996 -3.9033 10 1 2.0886 -3.2110 -3.9489 11 1 3.7382 -1.9065 -5.1560 12 1 3.8666 -2.0881 -2.7413 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8775 -0.4908 3.6696 16 8 2.5747 -1.4770 3.7808 17 6 1.3747 0.2193 4.9000 18 6 1.8847 -0.5020 6.1493 19 7 1.3964 0.1886 7.3454 20 6 0.6952 -0.3754 8.3559 21 6 0.4528 0.6153 9.2456 22 7 1.0097 1.7226 8.7423 23 7 1.5600 1.4365 7.6153 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 1.6668 -0.1934 -5.6867 33 1 3.1299 -0.7209 1.2496 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7578 2.3564 36 1 0.2847 0.2186 4.9000 37 1 1.7374 1.2471 4.8999 38 1 2.9747 -0.5016 6.1494 39 1 1.5218 -1.5298 6.1491 40 1 0.3904 -1.4083 8.4363 41 1 -0.0853 0.5291 10.1781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359765943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:25 Heat of formation + Delta-G solvation = 45.206156 kcal Electronic energy + Delta-G solvation = -21359.790464 eV Core-core repulsion = 18083.687770 eV Total energy + Delta-G solvation = -3276.102694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.53281 -39.98105 -37.46574 -35.53459 -33.82501 -32.23020 -31.44779 -31.21096 -27.95185 -26.86564 -26.63920 -25.07082 -23.00067 -22.54044 -21.62511 -20.40752 -18.50635 -18.02330 -17.04840 -16.79539 -16.51549 -16.02096 -15.60448 -15.22528 -14.64220 -14.34989 -14.17774 -13.67910 -13.55435 -13.39063 -12.96460 -12.80726 -12.46947 -12.32235 -12.11919 -11.78179 -11.31934 -11.20671 -11.20137 -11.06462 -10.68435 -10.57585 -10.49963 -10.14954 -10.04877 -9.80105 -9.70738 -9.54610 -9.05783 -8.99989 -8.58255 -6.08712 -4.06468 1.28151 1.94218 2.29211 2.47343 3.19146 3.27432 3.35970 3.39047 3.98788 4.19252 4.28486 4.41129 4.57488 4.71807 4.85874 4.90243 5.05054 5.23148 5.23846 5.28395 5.42978 5.46280 5.54729 5.84276 6.00662 6.01953 6.06771 6.22109 6.22249 6.33854 6.51874 6.56656 6.81182 6.94550 6.98119 7.12733 7.29330 7.43656 7.73427 8.09119 8.20854 8.47720 8.95032 9.53655 11.03962 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.045142 B = 0.002754 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.113152 B =10164.823625 C =10479.027128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.716 5.716 15 C 0.516 3.484 16 O -0.548 6.548 17 C -0.156 4.156 18 C 0.132 3.868 19 N -0.290 5.290 20 C -0.048 4.048 21 C -0.055 4.055 22 N -0.273 5.273 23 N -0.085 5.085 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.402 0.598 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.191 0.809 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.637 -1.840 23.236 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.367 5.367 15 C 0.300 3.700 16 O -0.427 6.427 17 C -0.197 4.197 18 C 0.011 3.989 19 N -0.084 5.084 20 C -0.199 4.199 21 C -0.212 4.212 22 N -0.139 5.139 23 N -0.065 5.065 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.208 0.792 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.514 -1.221 22.595 22.678 hybrid contribution -0.207 -1.638 -0.056 1.651 sum -1.720 -2.859 22.538 22.784 Atomic orbital electron populations 1.21785 0.94761 1.01259 1.00857 1.20699 0.95840 0.95968 0.93862 1.21784 1.00512 0.95512 1.00879 1.19593 0.96309 0.95478 0.92594 1.21061 1.31948 1.13395 0.88595 0.90388 1.25004 0.95693 0.96764 0.95990 1.69896 1.45833 1.40546 0.97909 0.86853 0.81317 0.83867 0.77691 1.20382 1.21469 1.19010 1.21698 0.99045 0.96047 0.83009 1.46158 1.52819 1.31978 1.05711 1.20110 0.80684 0.84586 0.84593 1.90731 1.38449 1.26552 1.86950 1.21883 1.03597 1.02302 0.91950 1.21866 1.02031 0.95862 0.79188 1.47599 1.35754 1.07975 1.17077 1.23755 1.02738 1.02452 0.90962 1.23652 1.05667 0.89219 1.02683 1.75140 1.10815 1.25237 1.02741 1.78317 1.20038 0.96029 1.12102 0.95051 0.90766 0.93390 0.93335 0.90771 0.94989 0.96342 0.96816 0.92744 0.91594 0.91635 0.76212 0.88021 0.86985 0.87162 0.86585 0.79193 0.79353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 2 C -0.06 -1.09 0.54 -154.51 -0.08 -1.17 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 5 C -0.51 -13.37 8.20 -34.44 -0.28 -13.65 16 6 H 0.08 2.16 5.92 -52.49 -0.31 1.85 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 9 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.12 1.90 4.56 -4.04 -0.02 1.88 16 14 N -0.72 -8.57 4.96 -60.30 -0.30 -8.87 16 15 C 0.52 5.94 7.83 -10.98 -0.09 5.85 16 16 O -0.55 -8.18 15.98 5.56 0.09 -8.09 16 17 C -0.16 -1.24 5.83 -27.88 -0.16 -1.40 16 18 C 0.13 0.99 5.74 -4.04 -0.02 0.96 16 19 N -0.29 -2.57 3.44 -61.26 -0.21 -2.78 16 20 C -0.05 -0.33 11.57 -17.05 -0.20 -0.53 16 21 C -0.05 -0.45 12.05 -17.74 -0.21 -0.66 16 22 N -0.27 -3.28 12.41 30.24 0.38 -2.91 16 23 N -0.08 -1.00 12.91 60.35 0.78 -0.22 16 24 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 25 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 30 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 31 H 0.01 0.30 7.57 -51.92 -0.39 -0.09 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.07 6.16 -40.82 -0.25 3.82 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.11 0.88 8.12 -51.93 -0.42 0.46 16 38 H 0.11 0.88 8.10 -51.93 -0.42 0.45 16 39 H 0.12 0.69 8.03 -51.93 -0.42 0.27 16 40 H 0.19 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -33.00 336.07 -4.87 -37.86 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.11 Total: 0.28 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -0.65 Total: -10.72 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 1.42 Total: -40.81 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.00 -4.87 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359765943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.069 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds