Wall clock time and date at job start Tue Mar 31 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46947 * 2 1 4 4 C 1.52994 * 109.46996 * 240.00028 * 2 1 3 5 5 C 1.50698 * 109.47387 * 60.00099 * 4 2 1 6 6 H 1.07994 * 119.99889 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00080 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00272 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47115 * 90.00279 * 9 7 5 11 11 H 1.48494 * 109.47505 * 209.99966 * 9 7 5 12 12 H 1.48497 * 109.47081 * 330.00200 * 9 7 5 13 13 C 1.52996 * 109.46705 * 120.00104 * 2 1 3 14 14 N 1.46498 * 109.47270 * 299.99789 * 13 2 1 15 15 C 1.34783 * 120.00381 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99295 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00127 * 180.02562 * 15 14 13 18 18 C 1.53004 * 109.46917 * 179.97438 * 17 15 14 19 19 N 1.46498 * 109.47171 * 179.97438 * 18 17 15 20 20 C 1.35308 * 125.86965 * 124.99697 * 19 18 17 21 21 C 1.35347 * 106.17713 * 179.97438 * 20 19 18 22 22 N 1.33774 * 106.49812 * 0.02562 * 21 20 19 23 23 N 1.28637 * 108.88333 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47447 * 300.00119 * 1 2 3 25 25 H 1.09004 * 109.47040 * 59.99817 * 1 2 3 26 26 H 1.08996 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46478 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47593 * 299.99674 * 3 2 1 29 29 H 1.08997 * 109.47193 * 60.00251 * 3 2 1 30 30 H 1.09006 * 109.47093 * 180.02562 * 4 2 1 31 31 H 1.09009 * 109.47142 * 299.99903 * 4 2 1 32 32 H 0.96996 * 120.00576 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47296 * 180.02562 * 13 2 1 34 34 H 1.08996 * 109.47550 * 59.99797 * 13 2 1 35 35 H 0.97003 * 120.00071 * 0.02562 * 14 13 2 36 36 H 1.08995 * 109.47077 * 59.99566 * 17 15 14 37 37 H 1.08996 * 109.46865 * 299.99656 * 17 15 14 38 38 H 1.09002 * 109.46649 * 59.99907 * 18 17 15 39 39 H 1.09000 * 109.47178 * 300.00184 * 18 17 15 40 40 H 1.07997 * 126.91159 * 359.97438 * 20 19 18 41 41 H 1.08002 * 126.75518 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4325 0.1380 -4.8057 9 14 2.9463 -1.9996 -3.9033 10 1 2.0886 -3.2110 -3.9489 11 1 3.7382 -1.9065 -5.1560 12 1 3.8666 -2.0881 -2.7413 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8775 -0.4908 3.6696 16 8 2.5747 -1.4770 3.7808 17 6 1.3747 0.2193 4.9000 18 6 1.8847 -0.5020 6.1493 19 7 1.3964 0.1886 7.3454 20 6 0.6952 -0.3754 8.3559 21 6 0.4528 0.6153 9.2456 22 7 1.0097 1.7226 8.7423 23 7 1.5600 1.4365 7.6153 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 1.6668 -0.1934 -5.6867 33 1 3.1299 -0.7209 1.2496 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7578 2.3564 36 1 0.2847 0.2186 4.9000 37 1 1.7374 1.2471 4.8999 38 1 2.9747 -0.5016 6.1494 39 1 1.5218 -1.5298 6.1491 40 1 0.3904 -1.4083 8.4363 41 1 -0.0853 0.5291 10.1781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359765943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:25 Heat of formation + Delta-G solvation = 21.835219 kcal Electronic energy + Delta-G solvation = -21360.803904 eV Core-core repulsion = 18083.687770 eV Total energy + Delta-G solvation = -3277.116134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.16382 -40.98742 -38.79751 -36.22391 -35.22376 -34.02051 -32.15731 -31.86810 -29.74619 -27.99277 -27.95030 -26.03121 -24.24536 -23.56294 -22.38335 -21.34973 -19.79965 -18.91117 -18.81049 -17.62187 -17.41505 -16.90850 -16.63897 -16.12356 -15.81939 -15.56580 -15.34923 -15.08616 -14.66348 -14.38863 -14.21297 -14.10755 -13.78797 -13.60580 -12.94381 -12.84240 -12.79872 -12.61124 -12.40797 -12.30254 -12.16850 -11.84497 -11.78046 -11.51814 -11.33728 -11.17772 -10.95028 -10.85405 -10.70984 -10.30499 -10.07048 -8.22746 -6.23101 0.68348 1.35085 1.35647 1.38682 1.48311 1.57344 1.66335 2.28158 2.38681 3.12760 3.41369 3.63725 3.72008 3.84258 3.94867 4.05838 4.16000 4.26024 4.29713 4.36268 4.49315 4.62723 4.67198 4.71751 4.79072 4.90227 4.94730 5.02113 5.09353 5.29832 5.31177 5.35294 5.41021 5.45905 5.56256 5.66208 5.69128 5.76646 6.37362 6.51804 6.84322 7.18370 7.39786 7.55111 8.92904 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.045142 B = 0.002754 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.113152 B =10164.823625 C =10479.027128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.051 0.949 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.935 3.065 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.250 1.250 13 C 0.138 3.862 14 N -0.711 5.711 15 C 0.520 3.480 16 O -0.581 6.581 17 C -0.143 4.143 18 C 0.132 3.868 19 N -0.290 5.290 20 C -0.033 4.033 21 C -0.066 4.066 22 N -0.314 5.314 23 N -0.125 5.125 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.262 0.738 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.413 0.587 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.233 0.767 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.969 -3.236 25.848 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.042 4.042 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.761 3.239 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.174 1.174 13 C 0.014 3.986 14 N -0.363 5.363 15 C 0.307 3.693 16 O -0.462 6.462 17 C -0.183 4.183 18 C 0.011 3.989 19 N -0.083 5.083 20 C -0.184 4.184 21 C -0.224 4.224 22 N -0.179 5.179 23 N -0.105 5.105 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.155 0.845 40 H 0.249 0.751 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.848 -2.586 25.229 25.429 hybrid contribution -0.162 -1.187 -0.798 1.440 sum -2.010 -3.773 24.431 24.802 Atomic orbital electron populations 1.21712 0.93906 1.01332 1.01228 1.20554 0.96473 0.95994 0.92879 1.21718 1.00253 0.95079 1.01222 1.19578 0.95963 0.95558 0.93128 1.21377 1.30201 1.12251 0.90160 0.93105 1.25864 0.97506 0.99996 0.95914 1.70044 1.48171 1.42729 0.98454 0.85875 0.79842 0.80311 0.77915 1.19640 1.21661 1.17394 1.21290 0.98368 0.95691 0.83218 1.46000 1.53021 1.32203 1.05035 1.20596 0.79666 0.83987 0.85050 1.90725 1.39883 1.28191 1.87386 1.21780 1.04648 1.01786 0.90131 1.21938 1.01755 0.96575 0.78643 1.47714 1.35551 1.07479 1.17604 1.24455 1.00662 1.03883 0.89428 1.24262 1.05551 0.88584 1.03972 1.75080 1.12058 1.27323 1.03443 1.78269 1.21816 0.97597 1.12769 0.91192 0.93870 0.93453 0.93706 0.93814 0.91242 0.96706 0.96678 0.92892 0.92554 0.92134 0.74893 0.85986 0.86685 0.87921 0.84537 0.75061 0.76622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 8.05 71.98 0.58 -3.28 16 2 C -0.06 -1.94 0.54 -52.18 -0.03 -1.97 16 3 C -0.13 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 5 C -0.50 -26.72 8.20 25.60 0.21 -26.51 16 6 H 0.05 2.93 5.92 -2.91 -0.02 2.91 16 7 C 0.00 0.19 5.47 84.65 0.46 0.65 16 8 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 9 Si 0.94 43.64 27.47 68.60 1.88 45.53 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 13 C 0.14 3.92 4.56 86.38 0.39 4.31 16 14 N -0.71 -14.90 4.96 -463.06 -2.30 -17.19 16 15 C 0.52 10.51 7.83 87.66 0.69 11.20 16 16 O -0.58 -16.03 15.98 -3.04 -0.05 -16.08 16 17 C -0.14 -1.83 5.83 29.85 0.17 -1.65 16 18 C 0.13 1.60 5.74 86.38 0.50 2.10 16 19 N -0.29 -4.40 3.44 -347.74 -1.20 -5.59 16 20 C -0.03 -0.34 11.57 83.49 0.97 0.63 16 21 C -0.07 -0.93 12.05 83.73 1.01 0.08 16 22 N -0.31 -7.22 12.41 -58.26 -0.72 -7.94 16 23 N -0.13 -2.81 12.91 37.02 0.48 -2.33 16 24 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 25 H 0.04 1.61 6.62 -2.38 -0.02 1.59 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.04 1.43 8.14 -2.38 -0.02 1.42 16 28 H 0.04 1.65 6.62 -2.39 -0.02 1.64 16 29 H 0.07 1.65 6.86 -2.39 -0.02 1.64 16 30 H 0.01 0.65 7.20 -2.38 -0.02 0.63 16 31 H 0.01 0.65 7.57 -2.38 -0.02 0.63 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.41 6.81 6.16 -92.71 -0.57 6.24 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.49 8.12 -2.39 -0.02 1.47 16 38 H 0.10 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.14 1.11 8.03 -2.39 -0.02 1.09 16 40 H 0.23 0.18 8.06 -2.91 -0.02 0.15 16 41 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -74.38 336.07 4.42 -69.95 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.40 Total: 9.59 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.62 Total: -17.94 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -3.44 Total: -91.05 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.05 Total: -16.08 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.53 kcal Total: -74.38 4.42 -69.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359765943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.787 kcal (2) G-P(sol) polarization free energy of solvation -74.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds