Wall clock time and date at job start Tue Mar 31 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47328 * 2 1 4 4 N 1.46500 * 109.47189 * 120.00212 * 2 1 3 5 5 N 1.40063 * 126.04654 * 300.17314 * 4 2 1 6 6 C 1.30851 * 108.37125 * 180.27357 * 5 4 2 7 7 C 1.39751 * 108.32557 * 359.74839 * 6 5 4 8 8 C 1.35260 * 126.04727 * 119.99881 * 4 2 1 9 9 N 1.39481 * 126.21475 * 0.02562 * 8 4 2 10 10 C 1.34777 * 119.99601 * 179.97438 * 9 8 4 11 11 O 1.21293 * 120.00456 * 359.71601 * 10 9 8 12 12 C 1.50698 * 119.99538 * 179.72258 * 10 9 8 13 13 H 1.09004 * 109.47330 * 319.99391 * 12 10 9 14 14 N 1.46907 * 109.46627 * 199.99924 * 12 10 9 15 15 C 1.52998 * 109.47522 * 79.99747 * 12 10 9 16 16 C 1.52996 * 109.47058 * 184.99883 * 15 12 10 17 17 C 1.50700 * 109.46838 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00466 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00366 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47221 * 89.99815 * 21 19 17 23 23 H 1.48501 * 109.46918 * 210.00219 * 21 19 17 24 24 H 1.48503 * 109.46856 * 329.99985 * 21 19 17 25 25 H 1.09003 * 109.47112 * 59.99623 * 1 2 3 26 26 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46865 * 300.00223 * 1 2 3 28 28 H 1.09007 * 109.47238 * 240.00199 * 2 1 3 29 29 H 1.09000 * 109.47221 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46619 * 300.00056 * 3 2 1 31 31 H 1.08998 * 109.46654 * 60.00187 * 3 2 1 32 32 H 1.08001 * 125.83370 * 179.74452 * 6 5 4 33 33 H 1.07997 * 126.08644 * 180.02562 * 7 6 5 34 34 H 0.97001 * 119.99852 * 359.70573 * 9 8 4 35 35 H 1.00903 * 110.99748 * 299.99524 * 14 12 10 36 36 H 1.00897 * 111.00361 * 63.95474 * 14 12 10 37 37 H 1.08993 * 109.46811 * 304.99874 * 15 12 10 38 38 H 1.09003 * 109.47236 * 64.99934 * 15 12 10 39 39 H 1.09006 * 109.47191 * 299.99406 * 16 15 12 40 40 H 1.08996 * 109.47643 * 60.00177 * 16 15 12 41 41 H 0.96997 * 119.99981 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.7564 -0.3262 2.5229 6 6 2.3651 -1.1747 3.3115 7 6 3.0311 -2.1124 2.5176 8 6 2.7992 -1.7949 1.2146 9 7 3.2842 -2.4800 0.1006 10 6 4.0569 -3.5720 0.2648 11 8 4.3348 -3.9560 1.3813 12 6 4.5757 -4.3157 -0.9388 13 1 3.7966 -4.3642 -1.6996 14 7 4.9603 -5.6776 -0.5444 15 6 5.7953 -3.5846 -1.5035 16 6 6.2463 -4.2681 -2.7959 17 6 7.4480 -3.5483 -3.3518 18 1 7.8496 -2.6890 -2.8352 19 6 8.0348 -3.9866 -4.5199 20 7 7.5462 -5.0333 -5.1488 21 14 9.5239 -3.0940 -5.2094 22 1 10.7627 -3.6953 -4.6535 23 1 9.5341 -3.2182 -6.6892 24 1 9.4585 -1.6588 -4.8335 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.3546 -1.1538 4.3912 33 1 3.6238 -2.9416 2.8745 34 1 3.0621 -2.1727 -0.7923 35 1 5.6820 -5.6596 0.1606 36 1 4.1588 -6.2025 -0.2282 37 1 5.5323 -2.5479 -1.7134 38 1 6.6058 -3.6136 -0.7752 39 1 6.5093 -5.3049 -2.5860 40 1 5.4360 -4.2391 -3.5243 41 1 7.9588 -5.3415 -5.9708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:23 Heat of formation + Delta-G solvation = 31.799204 kcal Electronic energy + Delta-G solvation = -21862.362997 eV Core-core repulsion = 18585.678933 eV Total energy + Delta-G solvation = -3276.684063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62031 -39.77365 -35.90635 -35.49303 -34.90857 -32.88877 -30.33147 -30.15557 -29.07890 -27.61061 -26.50174 -24.09776 -23.19749 -21.86225 -20.54013 -20.06641 -19.68218 -18.23828 -16.97563 -16.33384 -15.76488 -15.49473 -15.41432 -14.98089 -14.62572 -14.37223 -14.35141 -13.94100 -13.65163 -13.16669 -13.11378 -12.54180 -12.42326 -12.35500 -12.10894 -11.73153 -11.67515 -11.60041 -11.07176 -10.94334 -10.83618 -10.67793 -10.58081 -10.14137 -9.89678 -9.46898 -9.08092 -9.05262 -8.52848 -8.30944 -8.11506 -5.99695 -4.02252 1.65889 2.04758 2.57584 2.97592 3.03497 3.31344 3.37935 3.40417 4.15119 4.44017 4.54230 4.57246 4.64637 4.84175 4.85465 5.21633 5.25100 5.29959 5.33243 5.36780 5.40797 5.51167 5.58536 5.63982 5.80882 5.84284 5.92515 6.11401 6.28921 6.52001 6.72939 6.90503 6.97324 7.13594 7.32241 7.64311 7.68506 7.73395 7.87500 7.97758 8.05259 8.41036 9.05435 9.61459 11.11111 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.003775 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.675917 B = 7416.164075 C = 8202.895508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 C -0.160 4.160 4 N -0.383 5.383 5 N -0.294 5.294 6 C 0.056 3.944 7 C -0.286 4.286 8 C 0.309 3.691 9 N -0.651 5.651 10 C 0.490 3.510 11 O -0.516 6.516 12 C 0.086 3.914 13 H 0.103 0.897 14 N -0.803 5.803 15 C -0.097 4.097 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.052 0.948 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.411 0.589 35 H 0.351 0.649 36 H 0.337 0.663 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.014 0.986 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.264 8.264 10.673 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 C -0.218 4.218 4 N -0.172 5.172 5 N -0.116 5.116 6 C -0.130 4.130 7 C -0.318 4.318 8 C 0.089 3.911 9 N -0.299 5.299 10 C 0.276 3.724 11 O -0.389 6.389 12 C -0.031 4.031 13 H 0.121 0.879 14 N -0.331 5.331 15 C -0.136 4.136 16 C -0.006 4.006 17 C -0.563 4.563 18 H 0.070 0.930 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.200 0.800 33 H 0.187 0.813 34 H 0.247 0.753 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.531 8.796 10.323 19.877 hybrid contribution 0.853 0.268 0.047 0.896 sum -13.678 9.065 10.370 19.411 Atomic orbital electron populations 1.22120 0.93116 1.02963 1.03502 1.21250 0.95766 0.94186 0.83498 1.22127 1.01994 0.94228 1.03453 1.48842 1.40935 1.21333 1.06091 1.77331 1.25183 1.23724 0.85337 1.23741 0.96084 0.93180 1.00036 1.21643 1.13307 1.07567 0.89270 1.18247 0.94767 0.88470 0.89631 1.43363 1.50652 1.28621 1.07259 1.23192 0.76153 0.79141 0.93911 1.90605 1.56076 1.65982 1.26272 1.21907 1.00376 0.88999 0.91771 0.87920 1.58998 1.14617 1.10758 1.48730 1.21719 0.93171 0.97775 1.00895 1.19021 0.95624 0.96915 0.88999 1.21255 1.13422 1.13718 1.07893 0.92963 1.24984 0.97207 0.95073 0.96969 1.69968 1.40843 1.24493 1.17790 0.86648 0.83431 0.80081 0.78134 1.20660 1.21252 1.20009 0.90609 0.92155 0.90933 0.88901 0.91932 0.90583 0.90963 0.80011 0.81290 0.75280 0.83488 0.85105 0.92803 0.92467 0.94515 0.96792 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.45 37.16 0.35 -0.90 16 2 C 0.15 1.42 3.69 -67.93 -0.25 1.17 16 3 C -0.16 -1.35 9.46 37.16 0.35 -1.00 16 4 N -0.38 -4.74 3.28 -53.90 -0.18 -4.92 16 5 N -0.29 -3.92 12.42 30.60 0.38 -3.54 16 6 C 0.06 0.70 12.01 -17.40 -0.21 0.49 16 7 C -0.29 -4.15 9.65 -39.78 -0.38 -4.53 16 8 C 0.31 4.27 7.66 -153.15 -1.17 3.09 16 9 N -0.65 -8.21 5.42 -11.46 -0.06 -8.27 16 10 C 0.49 7.16 7.03 -10.99 -0.08 7.09 16 11 O -0.52 -8.66 13.38 5.55 0.07 -8.59 16 12 C 0.09 1.30 3.15 -68.86 -0.22 1.09 16 13 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 14 N -0.80 -12.32 8.44 -5.65 -0.05 -12.37 16 15 C -0.10 -1.83 4.78 -26.73 -0.13 -1.96 16 16 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 18 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 21 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.71 6.81 -51.93 -0.35 0.35 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.17 2.65 5.83 -52.49 -0.31 2.35 16 34 H 0.41 4.11 7.53 -40.82 -0.31 3.81 16 35 H 0.35 5.45 8.58 -39.29 -0.34 5.11 16 36 H 0.34 4.41 9.06 -39.29 -0.36 4.06 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -32.62 344.49 -7.46 -40.09 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.25 Total: 9.60 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.28 Total: -7.95 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.83 Total: -54.61 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.59 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.62 -7.46 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.885 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds