Wall clock time and date at job start Tue Mar 31 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47328 * 2 1 4 4 N 1.46500 * 109.47189 * 120.00212 * 2 1 3 5 5 N 1.40063 * 126.04654 * 300.17314 * 4 2 1 6 6 C 1.30851 * 108.37125 * 180.27357 * 5 4 2 7 7 C 1.39751 * 108.32557 * 359.74839 * 6 5 4 8 8 C 1.35260 * 126.04727 * 119.99881 * 4 2 1 9 9 N 1.39481 * 126.21475 * 0.02562 * 8 4 2 10 10 C 1.34777 * 119.99601 * 179.97438 * 9 8 4 11 11 O 1.21293 * 120.00456 * 359.71601 * 10 9 8 12 12 C 1.50698 * 119.99538 * 179.72258 * 10 9 8 13 13 H 1.09004 * 109.47330 * 319.99391 * 12 10 9 14 14 N 1.46907 * 109.46627 * 199.99924 * 12 10 9 15 15 C 1.52998 * 109.47522 * 79.99747 * 12 10 9 16 16 C 1.52996 * 109.47058 * 184.99883 * 15 12 10 17 17 C 1.50700 * 109.46838 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00466 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00366 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47221 * 89.99815 * 21 19 17 23 23 H 1.48501 * 109.46918 * 210.00219 * 21 19 17 24 24 H 1.48503 * 109.46856 * 329.99985 * 21 19 17 25 25 H 1.09003 * 109.47112 * 59.99623 * 1 2 3 26 26 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46865 * 300.00223 * 1 2 3 28 28 H 1.09007 * 109.47238 * 240.00199 * 2 1 3 29 29 H 1.09000 * 109.47221 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46619 * 300.00056 * 3 2 1 31 31 H 1.08998 * 109.46654 * 60.00187 * 3 2 1 32 32 H 1.08001 * 125.83370 * 179.74452 * 6 5 4 33 33 H 1.07997 * 126.08644 * 180.02562 * 7 6 5 34 34 H 0.97001 * 119.99852 * 359.70573 * 9 8 4 35 35 H 1.00903 * 110.99748 * 299.99524 * 14 12 10 36 36 H 1.00897 * 111.00361 * 63.95474 * 14 12 10 37 37 H 1.08993 * 109.46811 * 304.99874 * 15 12 10 38 38 H 1.09003 * 109.47236 * 64.99934 * 15 12 10 39 39 H 1.09006 * 109.47191 * 299.99406 * 16 15 12 40 40 H 1.08996 * 109.47643 * 60.00177 * 16 15 12 41 41 H 0.96997 * 119.99981 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.7564 -0.3262 2.5229 6 6 2.3651 -1.1747 3.3115 7 6 3.0311 -2.1124 2.5176 8 6 2.7992 -1.7949 1.2146 9 7 3.2842 -2.4800 0.1006 10 6 4.0569 -3.5720 0.2648 11 8 4.3348 -3.9560 1.3813 12 6 4.5757 -4.3157 -0.9388 13 1 3.7966 -4.3642 -1.6996 14 7 4.9603 -5.6776 -0.5444 15 6 5.7953 -3.5846 -1.5035 16 6 6.2463 -4.2681 -2.7959 17 6 7.4480 -3.5483 -3.3518 18 1 7.8496 -2.6890 -2.8352 19 6 8.0348 -3.9866 -4.5199 20 7 7.5462 -5.0333 -5.1488 21 14 9.5239 -3.0940 -5.2094 22 1 10.7627 -3.6953 -4.6535 23 1 9.5341 -3.2182 -6.6892 24 1 9.4585 -1.6588 -4.8335 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.3546 -1.1538 4.3912 33 1 3.6238 -2.9416 2.8745 34 1 3.0621 -2.1727 -0.7923 35 1 5.6820 -5.6596 0.1606 36 1 4.1588 -6.2025 -0.2282 37 1 5.5323 -2.5479 -1.7134 38 1 6.6058 -3.6136 -0.7752 39 1 6.5093 -5.3049 -2.5860 40 1 5.4360 -4.2391 -3.5243 41 1 7.9588 -5.3415 -5.9708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424077099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:20 Heat of formation + Delta-G solvation = 9.338448 kcal Electronic energy + Delta-G solvation = -21863.336968 eV Core-core repulsion = 18585.678933 eV Total energy + Delta-G solvation = -3277.658035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -42.63977 -40.93244 -36.96292 -36.67112 -36.02172 -34.83077 -31.95119 -31.18701 -30.14444 -28.24371 -28.10694 -25.73516 -24.04430 -23.21052 -22.02424 -21.05312 -20.85847 -19.18197 -18.46008 -18.00081 -17.02568 -16.71585 -16.51960 -16.32351 -15.84647 -15.58220 -15.40622 -15.09598 -14.85589 -14.29106 -14.04685 -13.95107 -13.84124 -13.45240 -13.14289 -13.06923 -12.81244 -12.52950 -12.40839 -12.33497 -12.30954 -12.12993 -11.82901 -11.69068 -11.49029 -11.22108 -10.99505 -10.47826 -9.99339 -9.74057 -9.18633 -8.13089 -6.22667 0.58559 1.07409 1.42928 1.43933 1.48687 1.54104 1.95559 2.02242 2.45294 3.20614 3.37404 3.41027 3.64894 3.89611 3.96101 4.04260 4.05113 4.24900 4.34160 4.49367 4.65189 4.71064 4.74118 4.76767 4.78242 4.88114 4.95230 5.07639 5.18510 5.20568 5.24123 5.58851 5.74114 5.85738 5.91531 6.00054 6.04071 6.21008 6.31308 6.49421 6.72813 6.86755 6.96250 7.45557 8.97909 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.003775 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.675917 B = 7416.164075 C = 8202.895508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.141 3.859 3 C -0.155 4.155 4 N -0.378 5.378 5 N -0.307 5.307 6 C 0.056 3.944 7 C -0.309 4.309 8 C 0.298 3.702 9 N -0.637 5.637 10 C 0.497 3.503 11 O -0.538 6.538 12 C 0.097 3.903 13 H 0.121 0.879 14 N -0.815 5.815 15 C -0.085 4.085 16 C 0.039 3.961 17 C -0.543 4.543 18 H 0.055 0.945 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.955 3.045 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.264 1.264 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.211 0.789 33 H 0.155 0.845 34 H 0.424 0.576 35 H 0.348 0.652 36 H 0.350 0.650 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.008 0.992 40 H -0.001 1.001 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.835 9.766 10.363 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 C -0.213 4.213 4 N -0.167 5.167 5 N -0.129 5.129 6 C -0.130 4.130 7 C -0.340 4.340 8 C 0.077 3.923 9 N -0.286 5.286 10 C 0.283 3.717 11 O -0.412 6.412 12 C -0.019 4.019 13 H 0.139 0.861 14 N -0.344 5.344 15 C -0.123 4.123 16 C 0.002 3.998 17 C -0.581 4.581 18 H 0.073 0.927 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.781 3.219 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.189 1.189 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.228 0.772 33 H 0.172 0.828 34 H 0.263 0.737 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.026 0.974 40 H 0.017 0.983 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.133 10.331 10.003 20.876 hybrid contribution 0.993 -0.194 0.150 1.023 sum -14.140 10.137 10.154 20.144 Atomic orbital electron populations 1.22082 0.91957 1.02748 1.04234 1.21674 0.96765 0.94570 0.82897 1.22099 1.01071 0.93855 1.04243 1.49116 1.40187 1.20793 1.06612 1.77297 1.25531 1.24123 0.85957 1.24176 0.95164 0.92234 1.01380 1.21674 1.14154 1.07993 0.90221 1.18310 0.95222 0.89125 0.89667 1.43127 1.49876 1.27810 1.07824 1.22875 0.76276 0.79394 0.93127 1.90614 1.57034 1.66654 1.26931 1.21677 0.99231 0.88631 0.92406 0.86096 1.58988 1.15380 1.11096 1.48920 1.21443 0.94400 0.98448 0.98004 1.18834 0.94343 0.95587 0.91076 1.21728 1.14392 1.13909 1.08104 0.92704 1.25840 1.00190 0.95841 0.97486 1.70091 1.42433 1.26021 1.18305 0.85597 0.79646 0.79273 0.77406 1.20333 1.20813 1.18876 0.87956 0.92804 0.92095 0.87115 0.93246 0.87939 0.92028 0.77232 0.82805 0.73699 0.83742 0.83617 0.91296 0.93598 0.97350 0.98302 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.45 71.98 0.68 -1.37 16 2 C 0.14 2.29 3.69 44.99 0.17 2.46 16 3 C -0.15 -2.30 9.46 71.98 0.68 -1.62 16 4 N -0.38 -8.83 3.28 -324.44 -1.07 -9.90 16 5 N -0.31 -7.84 12.42 -57.09 -0.71 -8.55 16 6 C 0.06 1.36 12.01 85.20 1.02 2.38 16 7 C -0.31 -8.80 9.65 22.14 0.21 -8.59 16 8 C 0.30 7.90 7.66 131.31 1.01 8.90 16 9 N -0.64 -15.10 5.42 -308.56 -1.67 -16.77 16 10 C 0.50 14.01 7.03 87.66 0.62 14.63 16 11 O -0.54 -17.84 13.38 -3.07 -0.04 -17.88 16 12 C 0.10 2.84 3.15 44.17 0.14 2.98 16 13 H 0.12 3.12 8.14 -2.39 -0.02 3.11 16 14 N -0.81 -24.70 8.44 -171.79 -1.45 -26.15 16 15 C -0.08 -3.12 4.78 30.59 0.15 -2.98 16 16 C 0.04 1.90 4.86 29.85 0.15 2.05 16 17 C -0.54 -29.71 9.11 25.60 0.23 -29.47 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 19 C 0.00 0.25 5.46 84.65 0.46 0.71 16 20 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 21 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.11 1.38 6.81 -2.38 -0.02 1.36 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.21 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.15 4.88 5.83 -2.91 -0.02 4.86 16 34 H 0.42 7.53 7.53 -92.71 -0.70 6.83 16 35 H 0.35 10.84 8.58 -89.69 -0.77 10.07 16 36 H 0.35 8.93 9.06 -89.70 -0.81 8.11 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.01 0.44 7.75 -2.38 -0.02 0.42 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -70.07 344.49 1.66 -68.41 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -1.22 Total: 30.13 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 5.51 Total: -9.92 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -4.61 Total: -116.13 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.04 Total: -17.88 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -70.07 1.66 -68.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.745 kcal (2) G-P(sol) polarization free energy of solvation -70.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds