Wall clock time and date at job start Tue Mar 31 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30503 * 125.65096 * 2 1 4 4 C 1.34123 * 109.25667 * 180.02562 * 3 2 1 5 5 C 1.34673 * 108.02311 * 359.73401 * 4 3 2 6 6 N 1.35045 * 125.64935 * 180.02562 * 2 1 3 7 7 C 1.46491 * 126.39721 * 359.96235 * 6 2 1 8 8 C 1.53003 * 109.47253 * 280.33201 * 7 6 2 9 9 H 1.09004 * 109.47015 * 54.87429 * 8 7 6 10 10 C 1.53000 * 109.46881 * 294.87506 * 8 7 6 11 11 C 1.53001 * 109.47494 * 174.87536 * 8 7 6 12 12 N 1.46493 * 109.47213 * 185.00070 * 11 8 7 13 13 C 1.34784 * 119.99686 * 179.72724 * 12 11 8 14 14 O 1.21582 * 119.99820 * 0.27044 * 13 12 11 15 15 N 1.34776 * 119.99519 * 180.27931 * 13 12 11 16 16 C 1.46504 * 119.99624 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.46916 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00341 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99700 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00384 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46667 * 89.99849 * 21 19 17 23 23 H 1.48497 * 109.46872 * 209.99855 * 21 19 17 24 24 H 1.48498 * 109.46886 * 329.99728 * 21 19 17 25 25 H 1.08999 * 109.46814 * 264.31304 * 1 2 3 26 26 H 1.08997 * 109.46961 * 24.30654 * 1 2 3 27 27 H 1.08996 * 109.47207 * 144.31286 * 1 2 3 28 28 H 1.08002 * 125.98984 * 180.02562 * 4 3 2 29 29 H 1.07999 * 126.59646 * 180.28942 * 5 4 3 30 30 H 1.09002 * 109.47186 * 160.33091 * 7 6 2 31 31 H 1.08996 * 109.47564 * 40.32881 * 7 6 2 32 32 H 1.09002 * 109.47443 * 57.98023 * 10 8 7 33 33 H 1.09002 * 109.47053 * 177.97803 * 10 8 7 34 34 H 1.09002 * 109.47227 * 297.97265 * 10 8 7 35 35 H 1.09000 * 109.47110 * 64.99780 * 11 8 7 36 36 H 1.09002 * 109.46855 * 305.00572 * 11 8 7 37 37 H 0.96995 * 120.00095 * 359.97438 * 12 11 8 38 38 H 0.96995 * 120.00317 * 359.97438 * 15 13 12 39 39 H 1.09004 * 109.46610 * 299.98982 * 16 15 13 40 40 H 1.08997 * 109.47742 * 59.98894 * 16 15 13 41 41 H 0.96996 * 120.00521 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6643 0.0050 6 7 2.2941 -1.0974 -0.0005 7 6 1.8425 -2.4910 -0.0003 8 6 1.4399 -2.8965 1.4190 9 1 0.6959 -2.1967 1.7996 10 6 2.6726 -2.8732 2.3250 11 6 0.8491 -4.3077 1.3980 12 7 0.3547 -4.6499 2.7339 13 6 -0.2166 -5.8508 2.9538 14 8 -0.3171 -6.6517 2.0446 15 7 -0.6765 -6.1634 4.1814 16 6 -1.2969 -7.4689 4.4206 17 6 -1.7216 -7.5665 5.8632 18 1 -1.5464 -6.7390 6.5349 19 6 -2.3337 -8.7122 6.3256 20 7 -2.5474 -9.7195 5.5077 21 14 -2.8595 -8.8334 8.1141 22 1 -4.2496 -8.3310 8.2564 23 1 -2.7979 -10.2507 8.5530 24 1 -1.9488 -8.0150 8.9543 25 1 -0.3633 -0.1018 1.0226 26 1 -0.3633 0.9366 -0.4230 27 1 -0.3633 -0.8346 -0.5995 28 1 4.4098 1.3411 -0.0003 29 1 4.4776 -1.2832 0.0105 30 1 2.6509 -3.1349 -0.3467 31 1 0.9849 -2.5952 -0.6649 32 1 3.1145 -1.8768 2.3118 33 1 2.3796 -3.1272 3.3437 34 1 3.4019 -3.5989 1.9651 35 1 1.6195 -5.0198 1.1022 36 1 0.0256 -4.3462 0.6849 37 1 0.4352 -4.0110 3.4592 38 1 -0.5961 -5.5245 4.9068 39 1 -2.1692 -7.5800 3.7765 40 1 -0.5789 -8.2585 4.1993 41 1 -2.9784 -10.5253 5.8329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426412985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:21 Heat of formation + Delta-G solvation = 14.750901 kcal Electronic energy + Delta-G solvation = -21229.815022 eV Core-core repulsion = 17952.391689 eV Total energy + Delta-G solvation = -3277.423333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.38039 -39.37875 -37.17168 -34.33128 -33.91701 -32.40683 -31.99558 -31.58968 -27.63941 -27.46902 -26.79790 -25.49444 -22.56490 -21.64717 -21.06963 -20.32007 -19.70085 -18.13840 -17.40990 -16.18670 -16.02842 -15.65077 -15.55902 -14.84192 -14.66319 -14.35958 -14.09571 -13.82809 -13.69671 -13.26096 -13.07920 -12.96504 -12.93506 -12.65918 -12.58848 -11.98709 -11.86606 -11.80041 -11.33636 -11.25405 -10.97323 -10.89709 -10.32352 -10.18098 -9.85428 -9.47292 -9.39200 -8.85480 -8.71412 -8.57361 -7.80087 -6.17375 -4.24063 1.78918 2.45798 2.92987 3.23297 3.26546 3.30564 3.35289 3.89140 4.16034 4.24464 4.30294 4.37954 4.41496 4.65077 4.80769 4.90706 5.03320 5.08349 5.14400 5.18795 5.21288 5.25954 5.46678 5.50216 5.52248 5.62196 5.66501 5.85431 5.88581 6.08325 6.53142 6.75410 6.93842 7.06481 7.47546 7.51826 7.54320 7.86857 7.88884 8.01220 8.73660 8.89925 9.29083 9.45127 10.92856 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037856 B = 0.002584 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.469240 B =10832.100041 C =10968.818141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.206 3.794 3 N -0.495 5.495 4 C -0.032 4.032 5 C -0.056 4.056 6 N -0.450 5.450 7 C 0.110 3.890 8 C -0.119 4.119 9 H 0.085 0.915 10 C -0.149 4.149 11 C 0.150 3.850 12 N -0.756 5.756 13 C 0.693 3.307 14 O -0.601 6.601 15 N -0.729 5.729 16 C 0.267 3.733 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.167 0.833 29 H 0.172 0.828 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.391 0.609 38 H 0.386 0.614 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 18.155 -9.821 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.056 4.056 3 N -0.215 5.215 4 C -0.180 4.180 5 C -0.189 4.189 6 N -0.132 5.132 7 C -0.014 4.014 8 C -0.138 4.138 9 H 0.103 0.897 10 C -0.206 4.206 11 C 0.024 3.976 12 N -0.415 5.415 13 C 0.392 3.608 14 O -0.480 6.480 15 N -0.381 5.381 16 C 0.146 3.854 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.185 0.815 29 H 0.189 0.811 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.225 0.775 38 H 0.218 0.782 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.941 17.812 -10.674 23.022 hybrid contribution 0.246 -0.453 1.659 1.738 sum 10.188 17.360 -9.015 22.055 Atomic orbital electron populations 1.20215 0.85034 1.04212 1.03450 1.23306 0.95727 0.81391 1.05222 1.70256 1.02306 1.28388 1.20511 1.22266 0.94781 0.92822 1.08095 1.22689 0.87088 0.96813 1.12268 1.45387 1.06458 1.07237 1.54166 1.21875 1.02227 0.79367 0.97887 1.21744 0.99232 0.97788 0.95047 0.89697 1.21862 0.96863 1.02061 0.99841 1.20925 0.98526 0.93150 0.84957 1.45089 1.66962 1.17558 1.11848 1.16134 0.78766 0.81535 0.84317 1.90874 1.63768 1.49819 1.43548 1.45725 1.63011 1.21067 1.08286 1.18983 0.92768 0.77589 0.96073 1.21222 1.40654 1.01628 0.94581 0.91965 1.24947 0.95448 0.95320 0.98311 1.69970 1.41744 1.05312 1.35246 0.86412 0.78988 0.77433 0.84045 1.20461 1.20998 1.19784 0.90162 0.89222 0.90712 0.81537 0.81056 0.88309 0.88557 0.92344 0.91813 0.92099 0.91587 0.91652 0.77534 0.78172 0.95731 0.95750 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.13 36.01 0.36 -0.14 16 2 C 0.21 2.05 7.89 -155.41 -1.23 0.82 16 3 N -0.50 -5.98 11.25 -10.81 -0.12 -6.10 16 4 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 5 C -0.06 -0.47 10.57 -16.56 -0.17 -0.64 16 6 N -0.45 -3.77 2.38 -113.91 -0.27 -4.05 16 7 C 0.11 0.71 5.24 -4.04 -0.02 0.69 16 8 C -0.12 -0.89 2.62 -90.62 -0.24 -1.13 16 9 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 10 C -0.15 -1.16 8.89 37.16 0.33 -0.83 16 11 C 0.15 1.62 5.06 -4.04 -0.02 1.60 16 12 N -0.76 -10.27 5.31 -65.23 -0.35 -10.62 16 13 C 0.69 13.76 8.57 -86.91 -0.74 13.01 16 14 O -0.60 -14.60 16.34 5.29 0.09 -14.51 16 15 N -0.73 -15.25 5.55 -66.41 -0.37 -15.62 16 16 C 0.27 7.08 5.43 -5.19 -0.03 7.05 16 17 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 18 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 21 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.42 7.48 -51.93 -0.39 0.03 16 28 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.10 0.53 7.51 -51.93 -0.39 0.14 16 32 H 0.06 0.48 6.89 -51.93 -0.36 0.12 16 33 H 0.06 0.53 7.23 -51.93 -0.38 0.15 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.39 4.28 7.67 -40.82 -0.31 3.97 16 38 H 0.39 6.88 8.33 -40.82 -0.34 6.54 16 39 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -35.06 346.37 -8.82 -43.88 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.35 Total: 4.75 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.38 Total: 6.60 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.37 Total: -61.64 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.09 Total: -14.51 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.06 -8.82 -43.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426412985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.627 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds