Wall clock time and date at job start Tue Mar 31 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30503 * 125.65096 * 2 1 4 4 C 1.34123 * 109.25667 * 180.02562 * 3 2 1 5 5 C 1.34673 * 108.02311 * 359.73401 * 4 3 2 6 6 N 1.35045 * 125.64935 * 180.02562 * 2 1 3 7 7 C 1.46491 * 126.39721 * 359.96235 * 6 2 1 8 8 C 1.53003 * 109.47253 * 280.33201 * 7 6 2 9 9 H 1.09004 * 109.47015 * 54.87429 * 8 7 6 10 10 C 1.53000 * 109.46881 * 294.87506 * 8 7 6 11 11 C 1.53001 * 109.47494 * 174.87536 * 8 7 6 12 12 N 1.46493 * 109.47213 * 185.00070 * 11 8 7 13 13 C 1.34784 * 119.99686 * 179.72724 * 12 11 8 14 14 O 1.21582 * 119.99820 * 0.27044 * 13 12 11 15 15 N 1.34776 * 119.99519 * 180.27931 * 13 12 11 16 16 C 1.46504 * 119.99624 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.46916 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00341 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99700 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00384 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46667 * 89.99849 * 21 19 17 23 23 H 1.48497 * 109.46872 * 209.99855 * 21 19 17 24 24 H 1.48498 * 109.46886 * 329.99728 * 21 19 17 25 25 H 1.08999 * 109.46814 * 264.31304 * 1 2 3 26 26 H 1.08997 * 109.46961 * 24.30654 * 1 2 3 27 27 H 1.08996 * 109.47207 * 144.31286 * 1 2 3 28 28 H 1.08002 * 125.98984 * 180.02562 * 4 3 2 29 29 H 1.07999 * 126.59646 * 180.28942 * 5 4 3 30 30 H 1.09002 * 109.47186 * 160.33091 * 7 6 2 31 31 H 1.08996 * 109.47564 * 40.32881 * 7 6 2 32 32 H 1.09002 * 109.47443 * 57.98023 * 10 8 7 33 33 H 1.09002 * 109.47053 * 177.97803 * 10 8 7 34 34 H 1.09002 * 109.47227 * 297.97265 * 10 8 7 35 35 H 1.09000 * 109.47110 * 64.99780 * 11 8 7 36 36 H 1.09002 * 109.46855 * 305.00572 * 11 8 7 37 37 H 0.96995 * 120.00095 * 359.97438 * 12 11 8 38 38 H 0.96995 * 120.00317 * 359.97438 * 15 13 12 39 39 H 1.09004 * 109.46610 * 299.98982 * 16 15 13 40 40 H 1.08997 * 109.47742 * 59.98894 * 16 15 13 41 41 H 0.96996 * 120.00521 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6643 0.0050 6 7 2.2941 -1.0974 -0.0005 7 6 1.8425 -2.4910 -0.0003 8 6 1.4399 -2.8965 1.4190 9 1 0.6959 -2.1967 1.7996 10 6 2.6726 -2.8732 2.3250 11 6 0.8491 -4.3077 1.3980 12 7 0.3547 -4.6499 2.7339 13 6 -0.2166 -5.8508 2.9538 14 8 -0.3171 -6.6517 2.0446 15 7 -0.6765 -6.1634 4.1814 16 6 -1.2969 -7.4689 4.4206 17 6 -1.7216 -7.5665 5.8632 18 1 -1.5464 -6.7390 6.5349 19 6 -2.3337 -8.7122 6.3256 20 7 -2.5474 -9.7195 5.5077 21 14 -2.8595 -8.8334 8.1141 22 1 -4.2496 -8.3310 8.2564 23 1 -2.7979 -10.2507 8.5530 24 1 -1.9488 -8.0150 8.9543 25 1 -0.3633 -0.1018 1.0226 26 1 -0.3633 0.9366 -0.4230 27 1 -0.3633 -0.8346 -0.5995 28 1 4.4098 1.3411 -0.0003 29 1 4.4776 -1.2832 0.0105 30 1 2.6509 -3.1349 -0.3467 31 1 0.9849 -2.5952 -0.6649 32 1 3.1145 -1.8768 2.3118 33 1 2.3796 -3.1272 3.3437 34 1 3.4019 -3.5989 1.9651 35 1 1.6195 -5.0198 1.1022 36 1 0.0256 -4.3462 0.6849 37 1 0.4352 -4.0110 3.4592 38 1 -0.5961 -5.5245 4.9068 39 1 -2.1692 -7.5800 3.7765 40 1 -0.5789 -8.2585 4.1993 41 1 -2.9784 -10.5253 5.8329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426412985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:19 Heat of formation + Delta-G solvation = -9.837123 kcal Electronic energy + Delta-G solvation = -21230.881239 eV Core-core repulsion = 17952.391689 eV Total energy + Delta-G solvation = -3278.489550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -43.04023 -40.90113 -38.10057 -36.11825 -35.13644 -34.29764 -32.60117 -32.58718 -29.34755 -28.18973 -27.54153 -26.58308 -24.47039 -22.31510 -21.93026 -21.80418 -20.45136 -19.71983 -18.16988 -17.97407 -17.19993 -16.80134 -16.57781 -16.34145 -15.96815 -15.32156 -15.12918 -14.96460 -14.60803 -14.49613 -14.09171 -14.00185 -13.92232 -13.60010 -13.49867 -13.26001 -13.12028 -12.89573 -12.70588 -12.47113 -12.21793 -12.09989 -11.93443 -11.46449 -11.26638 -10.90074 -10.79548 -10.52227 -10.25313 -9.56542 -9.23429 -8.27677 -6.43787 1.13224 1.44173 1.46593 1.57443 1.75020 2.04698 2.21761 2.26976 2.40532 3.07456 3.50749 3.60722 3.64534 3.70215 3.83210 4.05686 4.18806 4.29884 4.49613 4.56705 4.62194 4.71198 4.73500 4.79315 4.88198 4.92191 5.01391 5.09973 5.17195 5.24522 5.29065 5.43905 5.49945 5.55066 5.68998 5.86669 5.89073 6.26306 6.31246 6.68245 7.20796 7.25607 7.32171 7.74324 8.84575 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037856 B = 0.002584 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.469240 B =10832.100041 C =10968.818141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.192 3.808 3 N -0.537 5.537 4 C -0.059 4.059 5 C -0.048 4.048 6 N -0.447 5.447 7 C 0.109 3.891 8 C -0.101 4.101 9 H 0.088 0.912 10 C -0.147 4.147 11 C 0.148 3.852 12 N -0.731 5.731 13 C 0.691 3.309 14 O -0.648 6.648 15 N -0.725 5.725 16 C 0.286 3.714 17 C -0.554 4.554 18 H 0.083 0.917 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.984 3.016 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.256 1.256 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.178 0.822 29 H 0.199 0.801 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.408 0.592 38 H 0.404 0.596 39 H -0.014 1.014 40 H -0.014 1.014 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.956 19.278 -8.705 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 N -0.257 5.257 4 C -0.206 4.206 5 C -0.181 4.181 6 N -0.130 5.130 7 C -0.013 4.013 8 C -0.121 4.121 9 H 0.107 0.893 10 C -0.204 4.204 11 C 0.023 3.977 12 N -0.389 5.389 13 C 0.391 3.609 14 O -0.531 6.531 15 N -0.378 5.378 16 C 0.162 3.838 17 C -0.592 4.592 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.808 3.192 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.180 1.180 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.196 0.804 29 H 0.216 0.784 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.245 0.755 38 H 0.239 0.761 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.479 19.027 -9.551 23.729 hybrid contribution 0.150 -0.759 1.225 1.449 sum 10.629 18.268 -8.326 22.716 Atomic orbital electron populations 1.20308 0.83545 1.04861 1.04158 1.23747 0.96734 0.81513 1.05025 1.70213 1.03525 1.29983 1.21992 1.22629 0.94689 0.94095 1.09204 1.23110 0.87842 0.96598 1.10548 1.45466 1.06351 1.07510 1.53635 1.21982 1.03489 0.78618 0.97233 1.21558 0.99049 0.95454 0.95998 0.89324 1.21840 0.96904 1.02071 0.99591 1.21106 0.98446 0.95010 0.83100 1.44863 1.64845 1.15450 1.13710 1.16292 0.78673 0.82749 0.83190 1.90843 1.65535 1.51877 1.44833 1.45307 1.63165 1.19732 1.09624 1.18393 0.90506 0.79192 0.95695 1.21603 1.40449 1.02414 0.94770 0.89901 1.26046 0.95231 0.94771 1.03520 1.70131 1.42732 1.06141 1.37889 0.85164 0.78911 0.77500 0.77673 1.19627 1.20998 1.17996 0.89525 0.89405 0.89085 0.80439 0.78386 0.86682 0.87234 0.92472 0.92235 0.91689 0.92003 0.91757 0.75516 0.76084 0.99602 0.99647 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.13 71.24 0.72 -0.17 16 2 C 0.19 3.57 7.89 138.13 1.09 4.66 16 3 N -0.54 -12.68 11.25 -188.13 -2.12 -14.80 16 4 C -0.06 -1.13 11.87 83.53 0.99 -0.14 16 5 C -0.05 -0.70 10.57 83.09 0.88 0.18 16 6 N -0.45 -6.51 2.38 -514.29 -1.23 -7.74 16 7 C 0.11 1.11 5.24 86.38 0.45 1.56 16 8 C -0.10 -1.25 2.62 -10.79 -0.03 -1.28 16 9 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 10 C -0.15 -1.90 8.89 71.98 0.64 -1.26 16 11 C 0.15 2.90 5.06 86.38 0.44 3.34 16 12 N -0.73 -18.61 5.31 -478.54 -2.54 -21.15 16 13 C 0.69 27.28 8.57 179.05 1.53 28.82 16 14 O -0.65 -32.10 16.34 -3.97 -0.06 -32.16 16 15 N -0.72 -30.26 5.55 -482.29 -2.68 -32.93 16 16 C 0.29 15.60 5.43 85.63 0.46 16.06 16 17 C -0.55 -29.86 9.28 25.60 0.24 -29.62 16 18 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 19 C 0.00 0.22 5.46 84.66 0.46 0.68 16 20 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 21 Si 0.98 41.87 29.54 68.60 2.03 43.90 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 0.82 7.48 -2.39 -0.02 0.80 16 28 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 30 H 0.11 0.86 8.12 -2.39 -0.02 0.84 16 31 H 0.11 0.88 7.51 -2.39 -0.02 0.86 16 32 H 0.06 0.79 6.89 -2.39 -0.02 0.77 16 33 H 0.06 0.83 7.23 -2.39 -0.02 0.81 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.41 7.89 7.67 -92.71 -0.71 7.17 16 38 H 0.40 13.80 8.33 -92.71 -0.77 13.03 16 39 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 40 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -78.25 346.37 1.12 -77.13 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.45 Total: 20.37 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 7.88 Total: 22.83 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -8.27 Total: -132.06 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.06 Total: -32.16 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -78.25 1.12 -77.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426412985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.288 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds