Wall clock time and date at job start Tue Mar 31 2020 01:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 11 11 C 1.46504 * 120.00381 * 90.00024 * 10 9 8 12 12 C 1.34781 * 119.99786 * 269.99584 * 10 9 8 13 13 O 1.21576 * 120.00008 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99681 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99823 * 180.02562 * 14 12 10 16 16 C 1.50698 * 109.47250 * 179.97438 * 15 14 12 17 17 H 1.07991 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99971 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99778 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99917 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47460 * 59.99746 * 20 18 16 22 22 H 1.48498 * 109.46950 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46952 * 299.99604 * 20 18 16 24 24 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 25 25 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 26 26 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 27 27 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 28 28 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 30 30 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 31 31 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 34 34 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 35 35 H 1.08996 * 109.47253 * 89.99251 * 11 10 9 36 36 H 1.08999 * 109.47380 * 210.00276 * 11 10 9 37 37 H 1.09001 * 109.46721 * 329.99669 * 11 10 9 38 38 H 0.96996 * 120.00348 * 359.97438 * 14 12 10 39 39 H 1.09004 * 109.47451 * 300.00020 * 15 14 12 40 40 H 1.09010 * 109.47331 * 59.99840 * 15 14 12 41 41 H 0.97008 * 119.99763 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 6 1.0863 -4.3952 -1.4219 10 7 0.8148 -4.8251 -2.7958 11 6 1.8808 -5.4304 -3.5981 12 6 -0.4156 -4.6639 -3.3217 13 8 -1.3001 -4.1612 -2.6560 14 7 -0.6655 -5.0600 -4.5855 15 6 -2.0027 -4.8842 -5.1573 16 6 -2.0165 -5.4039 -6.5718 17 1 -1.1191 -5.8235 -7.0017 18 6 -3.1753 -5.3446 -7.3168 19 7 -4.2685 -4.8350 -6.7927 20 14 -3.1925 -5.9894 -9.0699 21 1 -2.8391 -7.4317 -9.0704 22 1 -4.5484 -5.8122 -9.6491 23 1 -2.2040 -5.2372 -9.8836 24 1 -0.3633 0.0031 1.0277 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5112 27 1 4.4097 1.3412 -0.0122 28 1 4.4776 -1.2831 -0.0089 29 1 0.9328 -2.5761 0.6021 30 1 2.6188 -3.1229 0.4394 31 1 2.4683 -2.8547 -2.0212 32 1 0.7822 -2.3078 -1.8583 33 1 1.8623 -5.0274 -0.9903 34 1 0.1765 -4.4799 -0.8278 35 1 1.8761 -6.5107 -3.4528 36 1 1.7154 -5.2048 -4.6516 37 1 2.8440 -5.0261 -3.2869 38 1 0.0403 -5.4607 -5.1167 39 1 -2.7287 -5.4360 -4.5601 40 1 -2.2618 -3.8254 -5.1571 41 1 -5.0839 -4.7936 -7.3167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:52 Heat of formation + Delta-G solvation = 27.729576 kcal Electronic energy + Delta-G solvation = -21488.432862 eV Core-core repulsion = 18211.572326 eV Total energy + Delta-G solvation = -3276.860535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.18201 -39.60489 -36.28332 -34.62443 -34.24062 -32.42497 -31.79971 -31.08169 -27.47990 -27.14389 -26.77989 -25.20594 -22.89081 -21.81255 -21.45985 -19.84114 -19.33356 -18.05836 -17.15642 -16.12119 -15.95243 -15.69638 -15.30440 -15.08463 -14.67268 -14.28830 -13.82275 -13.63148 -13.33556 -13.09243 -13.07615 -12.97456 -12.56674 -12.44526 -12.35693 -12.15773 -11.99821 -11.81617 -11.74219 -11.01339 -10.93410 -10.87712 -10.31234 -10.04147 -9.76016 -9.44491 -9.39857 -8.75360 -8.52687 -8.42401 -7.79478 -6.17225 -4.24137 1.92753 2.61137 3.06897 3.12662 3.24292 3.29525 3.31206 3.82426 4.29298 4.36899 4.43193 4.62533 4.65895 4.76506 4.92574 5.01942 5.13664 5.18443 5.18979 5.20709 5.33348 5.43672 5.45609 5.53250 5.68478 5.68951 5.78595 5.85243 6.06256 6.21689 6.66056 6.67316 7.04646 7.08998 7.46504 7.48767 7.54007 7.80396 7.99142 8.03406 8.71695 8.85380 9.26274 9.44295 10.92957 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.003099 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.477192 B = 9032.415216 C = 9470.342198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.211 3.789 3 N -0.497 5.497 4 C -0.031 4.031 5 C -0.062 4.062 6 N -0.453 5.453 7 C 0.107 3.893 8 C -0.153 4.153 9 C 0.142 3.858 10 N -0.643 5.643 11 C 0.083 3.917 12 C 0.694 3.306 13 O -0.597 6.597 14 N -0.728 5.728 15 C 0.266 3.734 16 C -0.544 4.544 17 H 0.061 0.939 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.171 0.829 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.387 0.613 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.423 1.904 13.083 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 N -0.217 5.217 4 C -0.179 4.179 5 C -0.195 4.195 6 N -0.136 5.136 7 C -0.017 4.017 8 C -0.193 4.193 9 C 0.017 3.983 10 N -0.382 5.382 11 C -0.061 4.061 12 C 0.395 3.605 13 O -0.476 6.476 14 N -0.381 5.381 15 C 0.145 3.855 16 C -0.582 4.582 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.201 1.201 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.184 0.816 28 H 0.189 0.811 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.221 0.779 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.184 2.959 13.493 20.527 hybrid contribution 0.857 -1.404 -1.340 2.122 sum 16.041 1.555 12.153 20.185 Atomic orbital electron populations 1.20261 0.84811 1.04721 1.03464 1.23375 0.95827 0.81302 1.04576 1.70258 1.02260 1.28435 1.20706 1.22263 0.94827 0.92800 1.08051 1.22654 0.87097 0.96865 1.12899 1.45466 1.06442 1.07477 1.54194 1.21853 1.01928 0.79068 0.98813 1.22409 1.02900 0.98778 0.95166 1.21016 1.01520 0.92522 0.83273 1.47024 1.10089 1.66705 1.14425 1.21649 0.90524 0.97797 0.96127 1.16107 0.81828 0.79728 0.82849 1.90855 1.44450 1.51138 1.61175 1.45876 1.16245 1.64351 1.11587 1.18987 0.76779 0.97291 0.92406 1.21171 0.97096 1.42337 0.97599 0.92086 1.24940 0.95183 0.95017 0.98814 1.69967 1.01034 1.43866 1.37351 0.86472 0.77331 0.79332 0.83750 1.20090 1.21034 1.20071 0.90250 0.89137 0.90154 0.81563 0.81127 0.88603 0.88897 0.91293 0.90224 0.90923 0.89510 0.92928 0.91229 0.91585 0.77934 0.95713 0.95759 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.04 36.00 0.36 -0.43 16 2 C 0.21 2.72 7.90 -155.41 -1.23 1.49 16 3 N -0.50 -7.20 11.25 -10.82 -0.12 -7.32 16 4 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 5 C -0.06 -0.63 11.58 -16.56 -0.19 -0.83 16 6 N -0.45 -4.90 2.75 -113.91 -0.31 -5.22 16 7 C 0.11 0.88 5.67 -4.04 -0.02 0.86 16 8 C -0.15 -1.60 5.86 -26.73 -0.16 -1.75 16 9 C 0.14 1.56 5.41 -4.04 -0.02 1.54 16 10 N -0.64 -9.23 2.87 -187.35 -0.54 -9.77 16 11 C 0.08 0.88 10.20 59.85 0.61 1.49 16 12 C 0.69 13.99 8.28 -86.91 -0.72 13.27 16 13 O -0.60 -14.29 15.92 5.30 0.08 -14.20 16 14 N -0.73 -15.50 5.41 -66.41 -0.36 -15.86 16 15 C 0.27 7.09 5.43 -5.20 -0.03 7.07 16 16 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 17 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -26.02 13.29 55.43 0.74 -25.28 16 20 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 0.87 7.34 -51.93 -0.38 0.49 16 27 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.10 0.73 7.94 -51.93 -0.41 0.32 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.11 7.64 -51.93 -0.40 0.71 16 33 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 37 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.39 7.11 6.05 -40.82 -0.25 6.86 16 39 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.72 8.14 -51.92 -0.42 0.29 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -35.25 347.23 -8.65 -43.91 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.33 Total: 4.03 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -2.03 Total: 8.76 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -0.60 Total: -63.45 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.25 -8.65 -43.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.636 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds