Wall clock time and date at job start Tue Mar 31 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46855 * 2 1 4 4 N 1.34969 * 126.06774 * 264.97128 * 3 2 1 5 5 H 0.96992 * 125.97806 * 0.02562 * 4 3 2 6 6 N 1.40080 * 108.04618 * 179.77762 * 4 3 2 7 7 C 1.31220 * 108.16708 * 0.41816 * 6 4 3 8 8 N 1.40153 * 125.97106 * 179.85268 * 7 6 4 9 9 C 1.34773 * 120.00300 * 359.69359 * 8 7 6 10 10 O 1.21296 * 119.99927 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00352 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47122 * 319.99720 * 11 9 8 13 13 N 1.46906 * 109.47167 * 199.99509 * 11 9 8 14 14 C 1.52997 * 109.47342 * 79.99610 * 11 9 8 15 15 C 1.53011 * 109.47134 * 185.00123 * 14 11 9 16 16 C 1.50697 * 109.46746 * 179.97438 * 15 14 11 17 17 H 1.07996 * 120.00457 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99417 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99665 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47288 * 59.99934 * 20 18 16 22 22 H 1.48502 * 109.47000 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47318 * 300.00124 * 20 18 16 24 24 C 1.35242 * 126.06882 * 85.00178 * 3 2 1 25 25 C 1.50704 * 126.06633 * 359.97353 * 24 3 2 26 26 H 1.09001 * 109.46881 * 60.00274 * 1 2 3 27 27 H 1.09005 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47449 * 300.00027 * 1 2 3 29 29 H 1.09002 * 109.46983 * 239.99948 * 2 1 3 30 30 H 1.09001 * 109.46881 * 119.99725 * 2 1 3 31 31 H 0.97007 * 120.00075 * 179.68973 * 8 7 6 32 32 H 1.00896 * 111.00309 * 299.99562 * 13 11 9 33 33 H 1.00902 * 110.99923 * 63.95725 * 13 11 9 34 34 H 1.09000 * 109.47278 * 304.99798 * 14 11 9 35 35 H 1.08994 * 109.47510 * 65.00307 * 14 11 9 36 36 H 1.09000 * 109.46772 * 299.99985 * 15 14 11 37 37 H 1.08998 * 109.46554 * 60.00185 * 15 14 11 38 38 H 0.96991 * 119.99848 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.46872 * 269.98114 * 25 24 3 40 40 H 1.09002 * 109.46974 * 29.97901 * 25 24 3 41 41 H 1.08999 * 109.47094 * 149.97580 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3873 2.1381 -1.0868 5 1 2.3636 1.8294 -2.0059 6 7 2.7906 3.4084 -0.6555 7 6 2.6890 3.4479 0.6521 8 7 3.0005 4.5431 1.4693 9 6 3.4561 5.6861 0.9196 10 8 3.5970 5.7669 -0.2824 11 6 3.7916 6.8635 1.7983 12 1 3.0460 6.9512 2.5886 13 7 3.7966 8.0911 0.9914 14 6 5.1736 6.6574 2.4217 15 6 5.4617 7.7899 3.4094 16 6 6.8226 7.5864 4.0237 17 1 7.4223 6.7348 3.7380 18 6 7.3026 8.4880 4.9499 19 7 6.5726 9.5253 5.2975 20 14 8.9899 8.2362 5.7110 21 1 10.0204 8.2373 4.6417 22 1 9.2700 9.3360 6.6688 23 1 9.0209 6.9356 6.4270 24 6 2.2079 2.2033 1.0890 25 6 1.9354 1.8092 2.5179 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8881 4.4784 2.4307 32 1 4.4802 8.0347 0.2514 33 1 2.8780 8.2843 0.6213 34 1 5.1965 5.7026 2.9470 35 1 5.9300 6.6586 1.6369 36 1 5.4388 8.7447 2.8841 37 1 4.7053 7.7886 4.1942 38 1 6.9102 10.1593 5.9492 39 1 0.9048 2.0561 2.7726 40 1 2.0918 0.7369 2.6352 41 1 2.6127 2.3496 3.1792 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566179826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:15 Heat of formation + Delta-G solvation = 17.370458 kcal Electronic energy + Delta-G solvation = -21538.741390 eV Core-core repulsion = 18261.431649 eV Total energy + Delta-G solvation = -3277.309740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59710 -39.62056 -35.48330 -34.95031 -34.22427 -32.78833 -31.90423 -30.10700 -29.76676 -26.68671 -26.42895 -24.25849 -23.78393 -21.74076 -20.23665 -20.12054 -19.17546 -17.74735 -16.72132 -16.45226 -16.06979 -15.63812 -15.29485 -14.87472 -14.57217 -14.30083 -14.10747 -13.85645 -13.47520 -13.18499 -12.97243 -12.72782 -12.47779 -12.31183 -12.02316 -11.70334 -11.57413 -11.51089 -10.95993 -10.86307 -10.76431 -10.56785 -10.53660 -10.03815 -9.78563 -9.36285 -9.00210 -8.71553 -8.37713 -8.27187 -8.21494 -5.92521 -3.94639 1.73502 2.30176 2.48674 3.19707 3.29439 3.37400 3.41875 3.44561 4.30582 4.50611 4.53278 4.67642 4.83563 4.88309 5.01074 5.10448 5.20139 5.33822 5.41163 5.42894 5.50419 5.56126 5.60891 5.65299 5.74946 5.80536 6.00765 6.08875 6.42508 6.63851 6.76252 6.98425 7.09919 7.28551 7.43347 7.76618 7.77933 7.84224 7.97269 8.14114 8.28770 8.49622 9.13114 9.68404 11.18382 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025428 B = 0.003256 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.878846 B = 8597.970756 C = 9189.455444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C 0.100 3.900 4 N -0.476 5.476 5 H 0.438 0.562 6 N -0.274 5.274 7 C 0.305 3.695 8 N -0.638 5.638 9 C 0.475 3.525 10 O -0.506 6.506 11 C 0.083 3.917 12 H 0.102 0.898 13 N -0.805 5.805 14 C -0.097 4.097 15 C 0.032 3.968 16 C -0.523 4.523 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.255 4.255 25 C -0.073 4.073 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.421 0.579 32 H 0.349 0.651 33 H 0.335 0.665 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.996 -19.407 -8.520 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.029 4.029 4 N -0.186 5.186 5 H 0.282 0.718 6 N -0.104 5.104 7 C 0.047 3.953 8 N -0.290 5.290 9 C 0.261 3.739 10 O -0.376 6.376 11 C -0.033 4.033 12 H 0.120 0.880 13 N -0.332 5.332 14 C -0.135 4.135 15 C -0.005 4.005 16 C -0.562 4.562 17 H 0.070 0.930 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.268 4.268 25 C -0.131 4.131 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.258 0.742 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.307 -18.023 -9.607 24.376 hybrid contribution 0.414 -1.391 0.305 1.483 sum -12.893 -19.414 -9.302 25.093 Atomic orbital electron populations 1.21737 0.93850 1.02185 1.02731 1.20228 0.96607 0.89263 1.03940 1.20729 0.99600 0.95240 0.87294 1.46100 1.54114 1.10062 1.08321 0.71805 1.78010 1.25259 0.97296 1.09811 1.19279 0.97745 0.88328 0.89917 1.43361 1.65146 1.10409 1.10093 1.23201 0.75433 0.84669 0.90638 1.90744 1.49650 1.81970 1.15271 1.21867 1.02191 0.84481 0.94737 0.88039 1.59016 1.11350 1.32665 1.30215 1.21695 0.90726 1.01599 0.99471 1.19015 0.95797 0.93234 0.92477 1.21244 1.02330 1.09236 1.23362 0.93017 1.24986 0.97243 0.95255 0.96804 1.69958 1.37226 1.13092 1.32919 0.86710 0.84897 0.77583 0.79083 1.20341 1.21341 1.20344 1.19466 1.17153 0.93435 0.96762 1.20059 1.01290 1.01331 0.90371 0.92673 0.91754 0.91815 0.90640 0.89020 0.74168 0.83684 0.85302 0.92705 0.92717 0.94619 0.96767 0.93033 0.92027 0.91768 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.40 16 2 C -0.06 -0.36 6.21 -27.88 -0.17 -0.53 16 3 C 0.10 0.99 6.45 -82.28 -0.53 0.46 16 4 N -0.48 -5.48 7.35 33.47 0.25 -5.23 16 5 H 0.44 3.61 8.96 -182.62 -1.64 1.98 16 6 N -0.27 -4.48 10.93 31.44 0.34 -4.13 16 7 C 0.31 4.56 7.78 -154.39 -1.20 3.36 16 8 N -0.64 -9.16 5.45 -11.13 -0.06 -9.22 16 9 C 0.48 8.03 7.04 -10.99 -0.08 7.95 16 10 O -0.51 -10.12 14.97 5.54 0.08 -10.03 16 11 C 0.08 1.41 3.15 -68.86 -0.22 1.19 16 12 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 13 N -0.80 -13.75 8.44 -5.65 -0.05 -13.80 16 14 C -0.10 -1.96 4.78 -26.73 -0.13 -2.08 16 15 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 16 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 20 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.25 -2.94 6.12 -104.87 -0.64 -3.58 16 25 C -0.07 -0.61 10.00 36.01 0.36 -0.25 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.46 7.30 -51.93 -0.38 0.08 16 31 H 0.42 4.77 8.22 -40.82 -0.34 4.44 16 32 H 0.35 6.10 8.58 -39.29 -0.34 5.76 16 33 H 0.34 5.00 9.06 -39.29 -0.36 4.64 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.43 7.25 -51.93 -0.38 0.06 16 41 H 0.06 0.52 7.70 -51.93 -0.40 0.12 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -35.83 346.28 -8.86 -44.69 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.57 Total: 8.65 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.79 Total: -6.74 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 1.22 Total: -58.56 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.83 -8.86 -44.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566179826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.056 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds