Wall clock time and date at job start Tue Mar 31 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46855 * 2 1 4 4 N 1.34969 * 126.06774 * 264.97128 * 3 2 1 5 5 H 0.96992 * 125.97806 * 0.02562 * 4 3 2 6 6 N 1.40080 * 108.04618 * 179.77762 * 4 3 2 7 7 C 1.31220 * 108.16708 * 0.41816 * 6 4 3 8 8 N 1.40153 * 125.97106 * 179.85268 * 7 6 4 9 9 C 1.34773 * 120.00300 * 359.69359 * 8 7 6 10 10 O 1.21296 * 119.99927 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00352 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47122 * 319.99720 * 11 9 8 13 13 N 1.46906 * 109.47167 * 199.99509 * 11 9 8 14 14 C 1.52997 * 109.47342 * 79.99610 * 11 9 8 15 15 C 1.53011 * 109.47134 * 185.00123 * 14 11 9 16 16 C 1.50697 * 109.46746 * 179.97438 * 15 14 11 17 17 H 1.07996 * 120.00457 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99417 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99665 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47288 * 59.99934 * 20 18 16 22 22 H 1.48502 * 109.47000 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47318 * 300.00124 * 20 18 16 24 24 C 1.35242 * 126.06882 * 85.00178 * 3 2 1 25 25 C 1.50704 * 126.06633 * 359.97353 * 24 3 2 26 26 H 1.09001 * 109.46881 * 60.00274 * 1 2 3 27 27 H 1.09005 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47449 * 300.00027 * 1 2 3 29 29 H 1.09002 * 109.46983 * 239.99948 * 2 1 3 30 30 H 1.09001 * 109.46881 * 119.99725 * 2 1 3 31 31 H 0.97007 * 120.00075 * 179.68973 * 8 7 6 32 32 H 1.00896 * 111.00309 * 299.99562 * 13 11 9 33 33 H 1.00902 * 110.99923 * 63.95725 * 13 11 9 34 34 H 1.09000 * 109.47278 * 304.99798 * 14 11 9 35 35 H 1.08994 * 109.47510 * 65.00307 * 14 11 9 36 36 H 1.09000 * 109.46772 * 299.99985 * 15 14 11 37 37 H 1.08998 * 109.46554 * 60.00185 * 15 14 11 38 38 H 0.96991 * 119.99848 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.46872 * 269.98114 * 25 24 3 40 40 H 1.09002 * 109.46974 * 29.97901 * 25 24 3 41 41 H 1.08999 * 109.47094 * 149.97580 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3873 2.1381 -1.0868 5 1 2.3636 1.8294 -2.0059 6 7 2.7906 3.4084 -0.6555 7 6 2.6890 3.4479 0.6521 8 7 3.0005 4.5431 1.4693 9 6 3.4561 5.6861 0.9196 10 8 3.5970 5.7669 -0.2824 11 6 3.7916 6.8635 1.7983 12 1 3.0460 6.9512 2.5886 13 7 3.7966 8.0911 0.9914 14 6 5.1736 6.6574 2.4217 15 6 5.4617 7.7899 3.4094 16 6 6.8226 7.5864 4.0237 17 1 7.4223 6.7348 3.7380 18 6 7.3026 8.4880 4.9499 19 7 6.5726 9.5253 5.2975 20 14 8.9899 8.2362 5.7110 21 1 10.0204 8.2373 4.6417 22 1 9.2700 9.3360 6.6688 23 1 9.0209 6.9356 6.4270 24 6 2.2079 2.2033 1.0890 25 6 1.9354 1.8092 2.5179 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8881 4.4784 2.4307 32 1 4.4802 8.0347 0.2514 33 1 2.8780 8.2843 0.6213 34 1 5.1965 5.7026 2.9470 35 1 5.9300 6.6586 1.6369 36 1 5.4388 8.7447 2.8841 37 1 4.7053 7.7886 4.1942 38 1 6.9102 10.1593 5.9492 39 1 0.9048 2.0561 2.7726 40 1 2.0918 0.7369 2.6352 41 1 2.6127 2.3496 3.1792 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566179826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:14 Heat of formation + Delta-G solvation = -9.215852 kcal Electronic energy + Delta-G solvation = -21539.894259 eV Core-core repulsion = 18261.431649 eV Total energy + Delta-G solvation = -3278.462609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.55289 -40.91667 -36.93322 -36.21524 -34.95006 -34.78981 -32.73716 -31.93625 -30.65575 -28.26237 -27.27879 -25.89489 -24.50054 -23.16336 -21.80534 -21.26301 -20.19094 -18.87229 -18.27793 -17.78688 -17.43385 -16.95653 -16.48289 -16.40045 -15.71638 -15.56380 -15.19401 -15.04075 -14.55989 -14.27197 -13.89455 -13.83126 -13.59509 -13.45082 -13.32737 -13.04579 -12.77165 -12.53874 -12.32372 -12.22960 -12.03306 -11.94629 -11.86467 -11.68196 -11.43014 -11.21965 -10.98998 -10.47085 -9.73668 -9.71542 -9.19026 -8.12365 -6.22395 0.79315 1.20034 1.42970 1.45617 1.50306 1.53397 2.05612 2.32202 2.46144 3.20680 3.45312 3.63132 3.66109 4.05058 4.07414 4.11522 4.27767 4.31419 4.41366 4.58689 4.76594 4.78518 4.86416 4.92513 4.97746 5.04468 5.08890 5.24222 5.29142 5.30355 5.41730 5.58591 5.72595 5.85853 5.95930 5.99988 6.11972 6.31767 6.46191 6.48912 6.75357 6.95856 7.08843 7.45456 8.98668 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025428 B = 0.003256 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.878846 B = 8597.970756 C = 9189.455444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C 0.113 3.887 4 N -0.470 5.470 5 H 0.449 0.551 6 N -0.331 5.331 7 C 0.279 3.721 8 N -0.627 5.627 9 C 0.481 3.519 10 O -0.540 6.540 11 C 0.094 3.906 12 H 0.121 0.879 13 N -0.815 5.815 14 C -0.083 4.083 15 C 0.040 3.960 16 C -0.545 4.545 17 H 0.055 0.945 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.958 3.042 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.265 1.265 24 C -0.267 4.267 25 C -0.071 4.071 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.434 0.566 32 H 0.345 0.655 33 H 0.347 0.653 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.006 0.994 37 H -0.001 1.001 38 H 0.262 0.738 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.297 -22.038 -7.932 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 C -0.016 4.016 4 N -0.182 5.182 5 H 0.295 0.705 6 N -0.161 5.161 7 C 0.023 3.977 8 N -0.279 5.279 9 C 0.267 3.733 10 O -0.413 6.413 11 C -0.022 4.022 12 H 0.138 0.862 13 N -0.343 5.343 14 C -0.121 4.121 15 C 0.003 3.997 16 C -0.583 4.583 17 H 0.073 0.927 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.190 1.190 24 C -0.280 4.280 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.274 0.726 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.017 0.983 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.631 -20.688 -9.004 26.361 hybrid contribution 0.443 -0.642 0.073 0.783 sum -13.189 -21.331 -8.931 26.621 Atomic orbital electron populations 1.21725 0.93144 1.03313 1.02071 1.20415 0.96977 0.86570 1.05703 1.21415 0.97501 0.96572 0.86132 1.46099 1.53589 1.08998 1.09490 0.70478 1.77862 1.27191 1.00057 1.11033 1.19616 0.98773 0.89348 0.89988 1.43146 1.64133 1.09806 1.10795 1.22953 0.75316 0.85141 0.89934 1.90729 1.51381 1.82605 1.16591 1.21668 1.00665 0.84783 0.95124 0.86181 1.59012 1.12160 1.32884 1.30282 1.21422 0.92387 1.00254 0.98034 1.18821 0.94462 0.93723 0.92675 1.21703 1.03607 1.09395 1.23625 0.92712 1.25881 1.01363 0.94901 0.97360 1.70088 1.39220 1.13997 1.33608 0.85609 0.79793 0.78027 0.78241 1.19826 1.20897 1.18963 1.19872 1.17158 0.92237 0.98768 1.20143 1.01844 1.02611 0.88317 0.93459 0.89726 0.92413 0.88757 0.87371 0.72625 0.84100 0.83919 0.91192 0.94112 0.97538 0.98254 0.92902 0.91040 0.89719 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.89 71.98 0.71 -0.37 16 2 C -0.06 -0.49 6.21 29.85 0.19 -0.30 16 3 C 0.11 2.03 6.45 41.39 0.27 2.29 16 4 N -0.47 -10.42 7.35 -48.03 -0.35 -10.77 16 5 H 0.45 7.04 8.96 -213.34 -1.91 5.12 16 6 N -0.33 -10.86 10.93 -54.45 -0.59 -11.46 16 7 C 0.28 8.24 7.78 133.33 1.04 9.28 16 8 N -0.63 -17.72 5.45 -307.52 -1.68 -19.39 16 9 C 0.48 16.31 7.04 87.66 0.62 16.93 16 10 O -0.54 -22.02 14.97 -3.08 -0.05 -22.07 16 11 C 0.09 3.17 3.15 44.17 0.14 3.31 16 12 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 13 N -0.81 -28.30 8.44 -171.80 -1.45 -29.75 16 14 C -0.08 -3.36 4.78 30.60 0.15 -3.22 16 15 C 0.04 2.09 4.86 29.85 0.15 2.24 16 16 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 17 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 18 C 0.00 0.17 5.46 84.66 0.46 0.63 16 19 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 20 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 24 C -0.27 -5.74 6.12 -20.03 -0.12 -5.87 16 25 C -0.07 -1.03 10.00 71.24 0.71 -0.31 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.64 7.30 -2.39 -0.02 0.62 16 31 H 0.43 9.42 8.22 -92.70 -0.76 8.66 16 32 H 0.35 12.43 8.58 -89.70 -0.77 11.66 16 33 H 0.35 10.45 9.06 -89.69 -0.81 9.64 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.26 15.09 8.31 -92.72 -0.77 14.32 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.86 7.25 -2.39 -0.02 0.84 16 41 H 0.06 0.90 7.70 -2.39 -0.02 0.88 16 Total: -1.00 -78.37 346.28 -0.45 -78.82 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -3.18 Total: 30.60 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 4.53 Total: -6.21 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -3.79 Total: -127.73 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -78.37 -0.45 -78.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566179826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.607 kcal (2) G-P(sol) polarization free energy of solvation -78.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds