Wall clock time and date at job start Tue Mar 31 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46727 * 2 1 4 4 N 1.46493 * 109.47571 * 120.00245 * 2 1 3 5 5 C 1.35814 * 126.05541 * 275.00435 * 4 2 1 6 6 C 1.35750 * 107.56594 * 180.02562 * 5 4 2 7 7 N 1.40763 * 126.08583 * 179.97438 * 6 5 4 8 8 C 1.34770 * 120.00432 * 180.02562 * 7 6 5 9 9 O 1.21301 * 120.00311 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.00115 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.46706 * 39.99951 * 10 8 7 12 12 N 1.46901 * 109.47195 * 160.00167 * 10 8 7 13 13 C 1.53004 * 109.46886 * 280.00031 * 10 8 7 14 14 C 1.52996 * 109.46981 * 174.99737 * 13 10 8 15 15 C 1.50702 * 109.47253 * 179.97438 * 14 13 10 16 16 H 1.08003 * 119.99323 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00403 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99715 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00070 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47369 * 60.00031 * 19 17 15 21 21 H 1.48504 * 109.46704 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46833 * 299.99604 * 19 17 15 23 23 C 1.40255 * 107.83707 * 359.97438 * 6 5 4 24 24 N 1.30827 * 108.33558 * 0.02562 * 23 6 5 25 25 H 1.08997 * 109.47022 * 299.98895 * 1 2 3 26 26 H 1.08999 * 109.47881 * 60.00163 * 1 2 3 27 27 H 1.09007 * 109.46953 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46905 * 240.00854 * 2 1 3 29 29 H 1.08999 * 109.47236 * 300.00817 * 3 2 1 30 30 H 1.09003 * 109.46982 * 60.00288 * 3 2 1 31 31 H 1.09000 * 109.46688 * 179.97438 * 3 2 1 32 32 H 1.08004 * 126.21684 * 0.05497 * 5 4 2 33 33 H 0.97007 * 119.99134 * 0.02562 * 7 6 5 34 34 H 1.00896 * 110.99446 * 296.04206 * 12 10 8 35 35 H 1.00893 * 110.99747 * 59.99669 * 12 10 8 36 36 H 1.09002 * 109.47005 * 295.00196 * 13 10 8 37 37 H 1.09001 * 109.46914 * 54.99734 * 13 10 8 38 38 H 1.09002 * 109.47626 * 300.00079 * 14 13 10 39 39 H 1.09001 * 109.47299 * 60.00233 * 14 13 10 40 40 H 0.97000 * 119.99731 * 180.02562 * 18 17 15 41 41 H 1.08003 * 125.83148 * 179.74156 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1946 -0.1362 2.4233 6 6 2.6598 -1.1081 3.2490 7 7 2.9758 -0.9567 4.6123 8 6 3.4315 -2.0095 5.3195 9 8 3.5699 -3.0877 4.7811 10 6 3.7693 -1.8474 6.7792 11 1 3.0249 -1.2094 7.2556 12 7 3.7741 -3.1645 7.4299 13 6 5.1521 -1.2067 6.9146 14 6 5.4426 -0.9278 8.3906 15 6 6.8048 -0.2972 8.5241 16 1 7.4033 -0.1134 7.6440 17 6 7.2871 0.0449 9.7696 18 7 6.5581 -0.1785 10.8411 19 14 8.9754 0.8272 9.9349 20 1 9.0064 2.1028 9.1753 21 1 9.2573 1.0977 11.3676 22 1 10.0041 -0.0967 9.3933 23 6 2.7696 -2.2901 2.5021 24 7 2.3866 -2.0396 1.2765 25 1 -0.3633 0.5136 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.6765 1.9565 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.9996 0.8912 2.6933 33 1 2.8655 -0.0943 5.0427 34 1 2.8551 -3.5805 7.4106 35 1 4.4564 -3.7748 7.0057 36 1 5.9073 -1.8850 6.5174 37 1 5.1749 -0.2706 6.3566 38 1 4.6874 -0.2495 8.7878 39 1 5.4197 -1.8639 8.9486 40 1 6.8972 0.0626 11.7174 41 1 3.1160 -3.2431 2.8739 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566732456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:37 Heat of formation + Delta-G solvation = 28.273001 kcal Electronic energy + Delta-G solvation = -21390.073056 eV Core-core repulsion = 18113.236086 eV Total energy + Delta-G solvation = -3276.836971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46002 -39.63221 -36.21124 -35.20939 -34.43411 -32.80480 -30.33265 -30.11101 -29.11455 -27.75872 -26.33537 -23.99926 -23.02672 -21.61080 -20.53749 -20.33552 -19.45594 -17.72813 -16.97405 -16.23522 -15.84096 -15.67886 -15.35140 -14.96973 -14.54318 -14.34586 -14.21935 -14.13372 -13.49147 -13.25914 -13.05140 -12.65255 -12.59185 -12.32017 -12.02381 -11.87369 -11.64463 -11.56629 -10.88213 -10.85184 -10.75359 -10.65940 -10.57491 -10.08169 -9.79738 -9.46558 -9.37435 -9.01467 -8.38075 -8.22507 -7.74460 -5.93971 -3.96187 1.67204 2.22454 2.45095 3.17120 3.28415 3.36125 3.40739 3.43309 4.15078 4.44377 4.49867 4.58691 4.61881 4.81970 4.97525 5.01071 5.06821 5.12440 5.21289 5.35746 5.41471 5.48319 5.49274 5.60856 5.67253 5.69269 5.80126 6.17488 6.42150 6.64177 6.80153 6.93105 7.07490 7.34303 7.50555 7.67856 7.75411 7.78804 7.95703 8.12722 8.26720 8.48092 9.11676 9.67000 11.16897 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.003123 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.205627 B = 8964.789823 C = 9703.350833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.161 3.839 3 C -0.165 4.165 4 N -0.368 5.368 5 C 0.012 3.988 6 C 0.007 3.993 7 N -0.644 5.644 8 C 0.485 3.515 9 O -0.542 6.542 10 C 0.083 3.917 11 H 0.100 0.900 12 N -0.806 5.806 13 C -0.096 4.096 14 C 0.032 3.968 15 C -0.524 4.524 16 H 0.051 0.949 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.050 3.950 24 N -0.290 5.290 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.173 0.827 33 H 0.412 0.588 34 H 0.335 0.665 35 H 0.349 0.651 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.013 0.987 39 H 0.035 0.965 40 H 0.260 0.740 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 2.938 -19.863 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 C -0.223 4.223 4 N -0.155 5.155 5 C -0.135 4.135 6 C -0.098 4.098 7 N -0.290 5.290 8 C 0.272 3.728 9 O -0.419 6.419 10 C -0.033 4.033 11 H 0.118 0.882 12 N -0.333 5.333 13 C -0.134 4.134 14 C -0.006 4.006 15 C -0.562 4.562 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.137 4.137 24 N -0.111 5.111 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.190 0.810 33 H 0.247 0.753 34 H 0.147 0.853 35 H 0.163 0.837 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -13.375 2.143 -20.591 24.647 hybrid contribution 0.692 1.013 0.221 1.246 sum -12.683 3.156 -20.369 24.202 Atomic orbital electron populations 1.22253 0.93787 1.03297 1.02996 1.21197 0.94630 0.92702 0.85556 1.22204 1.02504 0.94011 1.03595 1.48543 1.51789 1.07321 1.07808 1.21788 1.06619 0.99105 0.85961 1.17888 1.10879 0.94746 0.86304 1.43155 1.64748 1.14166 1.06898 1.22932 0.75065 0.83260 0.91583 1.90523 1.52863 1.26791 1.71728 1.21839 1.02069 0.94257 0.85175 0.88196 1.58999 1.11372 1.04365 1.58604 1.21683 0.90793 0.98118 1.02844 1.19013 0.95739 0.97657 0.88149 1.21246 1.02278 1.40233 0.92433 0.93028 1.24986 0.97249 0.96025 0.96034 1.69963 1.37210 1.47950 0.98076 0.86711 0.84912 0.79794 0.76866 1.20381 1.21338 1.20307 1.24490 0.99915 0.99989 0.89284 1.77350 1.20260 0.93275 1.20239 0.91856 0.90551 0.91638 0.88054 0.90039 0.91455 0.91357 0.80955 0.75274 0.85321 0.83684 0.92698 0.92785 0.96844 0.94618 0.93032 0.77949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 9.52 37.16 0.35 -0.65 16 2 C 0.16 1.19 3.93 -67.93 -0.27 0.92 16 3 C -0.16 -0.86 8.84 37.16 0.33 -0.53 16 4 N -0.37 -4.11 3.55 -54.53 -0.19 -4.31 16 5 C 0.01 0.13 10.65 -16.68 -0.18 -0.04 16 6 C 0.01 0.09 6.90 -83.88 -0.58 -0.49 16 7 N -0.64 -8.29 5.47 -10.04 -0.05 -8.35 16 8 C 0.48 7.43 7.04 -10.99 -0.08 7.35 16 9 O -0.54 -9.47 13.41 5.54 0.07 -9.39 16 10 C 0.08 1.33 3.15 -68.86 -0.22 1.11 16 11 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 12 N -0.81 -13.11 8.44 -5.65 -0.05 -13.16 16 13 C -0.10 -1.88 4.78 -26.73 -0.13 -2.01 16 14 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.05 0.76 10.84 -17.22 -0.19 0.57 16 24 N -0.29 -4.16 12.56 30.70 0.39 -3.77 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.32 7.17 -51.93 -0.37 -0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.17 1.26 7.29 -52.48 -0.38 0.87 16 33 H 0.41 4.19 8.83 -40.82 -0.36 3.83 16 34 H 0.33 4.71 9.06 -39.29 -0.36 4.35 16 35 H 0.35 5.76 8.58 -39.30 -0.34 5.42 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.20 3.26 5.92 -52.48 -0.31 2.95 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -33.68 344.72 -6.71 -40.40 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.29 Total: 9.31 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.50 Total: -6.53 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.83 Total: -55.60 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.68 -6.71 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566732456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.669 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds