Wall clock time and date at job start Tue Mar 31 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46816 * 2 1 4 4 C 1.50698 * 109.47471 * 119.99487 * 2 1 3 5 5 C 1.35238 * 126.06885 * 145.29905 * 4 2 1 6 6 C 1.40416 * 107.86554 * 180.16302 * 5 4 2 7 7 N 1.40152 * 125.97152 * 179.83050 * 6 5 4 8 8 C 1.34779 * 120.00175 * 359.71160 * 7 6 5 9 9 O 1.21287 * 120.00160 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99775 * 180.02562 * 8 7 6 11 11 H 1.08998 * 109.47793 * 40.00300 * 10 8 7 12 12 N 1.46901 * 109.46912 * 159.99971 * 10 8 7 13 13 C 1.53006 * 109.47301 * 279.99751 * 10 8 7 14 14 C 1.52999 * 109.46997 * 175.00426 * 13 10 8 15 15 C 1.50706 * 109.46573 * 180.02562 * 14 13 10 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48507 * 109.46754 * 210.00056 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 N 1.31219 * 108.05258 * 359.56022 * 6 5 4 24 24 N 1.34969 * 126.06999 * 324.97900 * 4 2 1 25 25 H 0.97002 * 125.97424 * 0.03534 * 24 4 2 26 26 H 1.09002 * 109.47460 * 60.00712 * 1 2 3 27 27 H 1.09005 * 109.46594 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47549 * 300.00013 * 1 2 3 29 29 H 1.08998 * 109.47549 * 239.99987 * 2 1 3 30 30 H 1.08993 * 109.47378 * 180.02562 * 3 2 1 31 31 H 1.09010 * 109.46735 * 300.00131 * 3 2 1 32 32 H 1.09002 * 109.47366 * 59.99270 * 3 2 1 33 33 H 1.08000 * 126.07007 * 0.02562 * 5 4 2 34 34 H 0.97004 * 119.99886 * 179.71053 * 7 6 5 35 35 H 1.00900 * 111.00110 * 60.00140 * 12 10 8 36 36 H 1.00905 * 111.00268 * 183.95255 * 12 10 8 37 37 H 1.09000 * 109.46866 * 55.00213 * 13 10 8 38 38 H 1.09001 * 109.46611 * 295.00330 * 13 10 8 39 39 H 1.09000 * 109.47486 * 60.00167 * 14 13 10 40 40 H 1.09001 * 109.47362 * 299.99445 * 14 13 10 41 41 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 3.1451 -1.4747 1.3100 6 6 3.2478 -1.9503 2.6272 7 7 4.2600 -2.7817 3.1257 8 6 5.2500 -3.2002 2.3124 9 8 5.2651 -2.8570 1.1492 10 6 6.3380 -4.0946 2.8484 11 1 5.9035 -4.8293 3.5263 12 7 6.9965 -4.7870 1.7327 13 6 7.3668 -3.2501 3.6030 14 6 8.4034 -4.1693 4.2523 15 6 9.4164 -3.3375 4.9961 16 1 9.3321 -2.2608 5.0010 17 6 10.4538 -3.9509 5.6659 18 7 10.5595 -5.2617 5.6553 19 14 11.7090 -2.9199 6.5884 20 1 11.2531 -2.7197 7.9874 21 1 13.0189 -3.6195 6.5900 22 1 11.8529 -1.6011 5.9211 23 7 2.2336 -1.4756 3.3111 24 7 1.4550 -0.6915 2.4503 25 1 0.6426 -0.2183 2.6889 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1298 1.4427 -0.0005 31 1 1.6765 1.9564 -0.8901 32 1 1.6765 1.9565 0.8899 33 1 3.8317 -1.6843 0.5031 34 1 4.2481 -3.0559 4.0561 35 1 7.4077 -4.1271 1.0897 36 1 7.6868 -5.4412 2.0700 37 1 6.8633 -2.6680 4.3748 38 1 7.8648 -2.5759 2.9062 39 1 8.9070 -4.7514 3.4806 40 1 7.9054 -4.8435 4.9492 41 1 11.2896 -5.6932 6.1262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568979247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:05 Heat of formation + Delta-G solvation = 17.153206 kcal Electronic energy + Delta-G solvation = -21408.440654 eV Core-core repulsion = 18131.121493 eV Total energy + Delta-G solvation = -3277.319161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51814 -39.63098 -36.08731 -35.52801 -34.41471 -32.87655 -30.42902 -29.92959 -29.48887 -27.54080 -26.66333 -24.23244 -23.10189 -21.61437 -20.44969 -20.27776 -19.67259 -17.54034 -17.04654 -16.33609 -16.21117 -15.45485 -15.04455 -14.83540 -14.46486 -14.27947 -14.25517 -13.99228 -13.54500 -13.22199 -13.16292 -13.00368 -12.62386 -12.19072 -11.79300 -11.67699 -11.58983 -11.43666 -11.11570 -10.95992 -10.89407 -10.71698 -10.64661 -10.01303 -9.91795 -9.33453 -9.24017 -8.74366 -8.44908 -8.37438 -8.24388 -6.09351 -4.12429 1.72792 2.39131 2.45482 3.25473 3.27273 3.33115 3.34125 3.37593 4.23644 4.39204 4.47953 4.71183 4.83411 5.06323 5.08733 5.14940 5.18962 5.26981 5.37219 5.40780 5.50422 5.59145 5.66789 5.68243 5.76414 5.88385 5.91329 6.20888 6.29310 6.47820 6.83758 6.88284 7.04234 7.28793 7.45236 7.50439 7.60512 7.84798 7.85834 7.87965 8.25918 8.30425 8.93486 9.52658 11.01563 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.003013 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.452614 B = 9291.383878 C = 9586.644139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C -0.145 4.145 4 C 0.099 3.901 5 C -0.262 4.262 6 C 0.311 3.689 7 N -0.639 5.639 8 C 0.534 3.466 9 O -0.510 6.510 10 C 0.081 3.919 11 H 0.102 0.898 12 N -0.829 5.829 13 C -0.139 4.139 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.326 5.326 24 N -0.470 5.470 25 H 0.436 0.564 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.172 0.828 34 H 0.417 0.583 35 H 0.347 0.653 36 H 0.357 0.643 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.154 9.054 -9.691 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.054 4.054 3 C -0.203 4.203 4 C -0.030 4.030 5 C -0.293 4.293 6 C 0.055 3.945 7 N -0.289 5.289 8 C 0.322 3.678 9 O -0.382 6.382 10 C -0.035 4.035 11 H 0.120 0.880 12 N -0.362 5.362 13 C -0.179 4.179 14 C -0.013 4.013 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.158 5.158 24 N -0.180 5.180 25 H 0.281 0.719 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.189 0.811 34 H 0.253 0.747 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.205 8.827 -9.547 24.027 hybrid contribution 1.555 1.033 0.986 2.111 sum -18.651 9.860 -8.561 22.768 Atomic orbital electron populations 1.21884 0.94248 1.02463 1.02325 1.19872 0.95801 0.96020 0.93674 1.21852 1.02167 0.94223 1.02048 1.21036 0.94624 0.99117 0.88207 1.21627 1.01996 1.07586 0.98067 1.19216 0.89664 0.93309 0.92311 1.42886 1.22885 1.48080 1.15028 1.21134 0.81203 0.79955 0.85558 1.90562 1.75074 1.55484 1.17101 1.21445 0.93092 0.95511 0.93439 0.87982 1.58734 1.38932 1.21940 1.16615 1.22427 0.97039 0.99336 0.99101 1.19109 0.92444 0.94307 0.95414 1.21176 1.10012 0.93205 1.31861 0.92678 1.25008 0.97876 0.94942 0.96470 1.69944 1.32089 1.08201 1.42954 0.86581 0.80793 0.80356 0.80218 1.20603 1.21150 1.19878 1.77341 1.07166 1.15991 1.15266 1.45744 1.23824 1.42067 1.06394 0.71947 0.91355 0.92019 0.92873 0.88276 0.91690 0.91683 0.92704 0.81103 0.74665 0.83997 0.82661 0.92337 0.92413 0.96294 0.96188 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.95 37.16 0.33 -0.53 16 2 C -0.03 -0.26 3.31 -91.77 -0.30 -0.56 16 3 C -0.15 -1.01 9.18 37.16 0.34 -0.67 16 4 C 0.10 1.11 5.90 -82.28 -0.49 0.63 16 5 C -0.26 -3.83 9.52 -39.83 -0.38 -4.21 16 6 C 0.31 4.79 8.11 -154.39 -1.25 3.54 16 7 N -0.64 -9.43 5.45 -11.13 -0.06 -9.49 16 8 C 0.53 8.79 7.05 -10.99 -0.08 8.72 16 9 O -0.51 -9.39 13.38 5.55 0.07 -9.32 16 10 C 0.08 1.32 3.21 -68.86 -0.22 1.10 16 11 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 12 N -0.83 -13.62 8.94 -5.65 -0.05 -13.67 16 13 C -0.14 -2.66 4.78 -26.73 -0.13 -2.79 16 14 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 15 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 N -0.33 -4.70 12.72 31.44 0.40 -4.30 16 24 N -0.47 -5.20 7.13 33.47 0.24 -4.96 16 25 H 0.44 3.39 8.18 -182.62 -1.49 1.89 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.25 7.45 -51.93 -0.39 -0.13 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.17 2.71 5.92 -52.49 -0.31 2.40 16 34 H 0.42 5.27 8.82 -40.82 -0.36 4.91 16 35 H 0.35 5.70 8.58 -39.29 -0.34 5.37 16 36 H 0.36 5.88 7.55 -39.29 -0.30 5.58 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -32.07 341.89 -8.56 -40.63 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.31 Total: 12.25 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.72 Total: -7.38 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 1.26 Total: -57.55 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.07 -8.56 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568979247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.779 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds