Wall clock time and date at job start Tue Mar 31 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46816 * 2 1 4 4 C 1.50698 * 109.47471 * 119.99487 * 2 1 3 5 5 C 1.35238 * 126.06885 * 145.29905 * 4 2 1 6 6 C 1.40416 * 107.86554 * 180.16302 * 5 4 2 7 7 N 1.40152 * 125.97152 * 179.83050 * 6 5 4 8 8 C 1.34779 * 120.00175 * 359.71160 * 7 6 5 9 9 O 1.21287 * 120.00160 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99775 * 180.02562 * 8 7 6 11 11 H 1.08998 * 109.47793 * 40.00300 * 10 8 7 12 12 N 1.46901 * 109.46912 * 159.99971 * 10 8 7 13 13 C 1.53006 * 109.47301 * 279.99751 * 10 8 7 14 14 C 1.52999 * 109.46997 * 175.00426 * 13 10 8 15 15 C 1.50706 * 109.46573 * 180.02562 * 14 13 10 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48507 * 109.46754 * 210.00056 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 N 1.31219 * 108.05258 * 359.56022 * 6 5 4 24 24 N 1.34969 * 126.06999 * 324.97900 * 4 2 1 25 25 H 0.97002 * 125.97424 * 0.03534 * 24 4 2 26 26 H 1.09002 * 109.47460 * 60.00712 * 1 2 3 27 27 H 1.09005 * 109.46594 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47549 * 300.00013 * 1 2 3 29 29 H 1.08998 * 109.47549 * 239.99987 * 2 1 3 30 30 H 1.08993 * 109.47378 * 180.02562 * 3 2 1 31 31 H 1.09010 * 109.46735 * 300.00131 * 3 2 1 32 32 H 1.09002 * 109.47366 * 59.99270 * 3 2 1 33 33 H 1.08000 * 126.07007 * 0.02562 * 5 4 2 34 34 H 0.97004 * 119.99886 * 179.71053 * 7 6 5 35 35 H 1.00900 * 111.00110 * 60.00140 * 12 10 8 36 36 H 1.00905 * 111.00268 * 183.95255 * 12 10 8 37 37 H 1.09000 * 109.46866 * 55.00213 * 13 10 8 38 38 H 1.09001 * 109.46611 * 295.00330 * 13 10 8 39 39 H 1.09000 * 109.47486 * 60.00167 * 14 13 10 40 40 H 1.09001 * 109.47362 * 299.99445 * 14 13 10 41 41 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 3.1451 -1.4747 1.3100 6 6 3.2478 -1.9503 2.6272 7 7 4.2600 -2.7817 3.1257 8 6 5.2500 -3.2002 2.3124 9 8 5.2651 -2.8570 1.1492 10 6 6.3380 -4.0946 2.8484 11 1 5.9035 -4.8293 3.5263 12 7 6.9965 -4.7870 1.7327 13 6 7.3668 -3.2501 3.6030 14 6 8.4034 -4.1693 4.2523 15 6 9.4164 -3.3375 4.9961 16 1 9.3321 -2.2608 5.0010 17 6 10.4538 -3.9509 5.6659 18 7 10.5595 -5.2617 5.6553 19 14 11.7090 -2.9199 6.5884 20 1 11.2531 -2.7197 7.9874 21 1 13.0189 -3.6195 6.5900 22 1 11.8529 -1.6011 5.9211 23 7 2.2336 -1.4756 3.3111 24 7 1.4550 -0.6915 2.4503 25 1 0.6426 -0.2183 2.6889 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1298 1.4427 -0.0005 31 1 1.6765 1.9564 -0.8901 32 1 1.6765 1.9565 0.8899 33 1 3.8317 -1.6843 0.5031 34 1 4.2481 -3.0559 4.0561 35 1 7.4077 -4.1271 1.0897 36 1 7.6868 -5.4412 2.0700 37 1 6.8633 -2.6680 4.3748 38 1 7.8648 -2.5759 2.9062 39 1 8.9070 -4.7514 3.4806 40 1 7.9054 -4.8435 4.9492 41 1 11.2896 -5.6932 6.1262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568979247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:04 Heat of formation + Delta-G solvation = -5.637704 kcal Electronic energy + Delta-G solvation = -21409.428942 eV Core-core repulsion = 18131.121493 eV Total energy + Delta-G solvation = -3278.307449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.56500 -40.90806 -37.26954 -36.71746 -35.49214 -34.84670 -31.69284 -31.50164 -30.45243 -28.30700 -27.98794 -25.97778 -23.91277 -23.11688 -21.83311 -21.27327 -20.91972 -18.94019 -18.23001 -17.90432 -17.44874 -16.66397 -16.43491 -16.13415 -15.76123 -15.66508 -15.37068 -14.90900 -14.72079 -14.66362 -14.37767 -14.05813 -13.84172 -13.47816 -13.07424 -12.94090 -12.71250 -12.53445 -12.32647 -12.26729 -12.08821 -11.95110 -11.79597 -11.71748 -11.60049 -11.29527 -10.78706 -10.55056 -9.78592 -9.67777 -9.44691 -8.20938 -6.30761 0.67302 1.28257 1.32697 1.40064 1.40821 1.51278 2.05239 2.30838 2.40730 3.13000 3.38313 3.71777 3.73178 3.87521 4.08779 4.10356 4.17830 4.20433 4.42700 4.64084 4.64600 4.67853 4.76706 4.82894 4.93833 4.97126 5.07766 5.11893 5.14422 5.33255 5.35329 5.47992 5.67052 5.72450 5.81753 5.94119 6.12813 6.22374 6.44285 6.48990 6.74882 6.84739 7.01032 7.38231 8.89794 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.003013 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.452614 B = 9291.383878 C = 9586.644139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.033 4.033 3 C -0.143 4.143 4 C 0.123 3.877 5 C -0.299 4.299 6 C 0.290 3.710 7 N -0.631 5.631 8 C 0.537 3.463 9 O -0.532 6.532 10 C 0.090 3.910 11 H 0.117 0.883 12 N -0.827 5.827 13 C -0.123 4.123 14 C 0.030 3.970 15 C -0.545 4.545 16 H 0.054 0.946 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.957 3.043 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.268 1.268 23 N -0.343 5.343 24 N -0.453 5.453 25 H 0.452 0.548 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.154 0.846 34 H 0.426 0.574 35 H 0.347 0.653 36 H 0.357 0.643 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.007 0.993 40 H 0.004 0.996 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.587 10.623 -9.827 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.053 4.053 3 C -0.200 4.200 4 C -0.007 4.007 5 C -0.329 4.329 6 C 0.035 3.965 7 N -0.281 5.281 8 C 0.324 3.676 9 O -0.405 6.405 10 C -0.025 4.025 11 H 0.135 0.865 12 N -0.360 5.360 13 C -0.163 4.163 14 C -0.007 4.007 15 C -0.583 4.583 16 H 0.072 0.928 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.782 3.218 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.193 1.193 23 N -0.175 5.175 24 N -0.166 5.166 25 H 0.300 0.700 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.172 0.828 34 H 0.264 0.736 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.023 0.977 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.674 10.410 -9.654 25.910 hybrid contribution 1.914 0.584 0.988 2.231 sum -19.761 10.994 -8.666 24.217 Atomic orbital electron populations 1.21887 0.92178 1.02629 1.03914 1.20036 0.97435 0.96055 0.91770 1.21842 1.01086 0.93703 1.03395 1.21454 0.93037 0.97155 0.89089 1.21607 1.03640 1.09990 0.97668 1.19401 0.90165 0.94063 0.92881 1.42711 1.22458 1.47671 1.15233 1.20977 0.81466 0.79751 0.85372 1.90565 1.75712 1.56209 1.18031 1.21331 0.92505 0.95357 0.93348 0.86522 1.58743 1.38887 1.21851 1.16492 1.22172 0.96553 0.98546 0.99011 1.18975 0.92805 0.94310 0.94643 1.21625 1.10938 0.93585 1.32150 0.92796 1.25839 0.99922 0.96063 0.97432 1.70052 1.32915 1.09702 1.43914 0.85563 0.78284 0.78858 0.79047 1.19853 1.20763 1.19267 1.77266 1.07322 1.16719 1.16185 1.45762 1.23813 1.41018 1.05964 0.69992 0.89490 0.92560 0.91669 0.88118 0.93417 0.89455 0.92276 0.82813 0.73628 0.84011 0.82739 0.91691 0.93255 0.97513 0.97746 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.95 71.98 0.64 -0.60 16 2 C -0.03 -0.44 3.31 -11.54 -0.04 -0.48 16 3 C -0.14 -1.67 9.18 71.98 0.66 -1.01 16 4 C 0.12 2.62 5.90 41.38 0.24 2.87 16 5 C -0.30 -8.73 9.52 22.11 0.21 -8.52 16 6 C 0.29 8.87 8.11 133.33 1.08 9.95 16 7 N -0.63 -18.52 5.45 -307.52 -1.68 -20.20 16 8 C 0.54 17.69 7.05 87.66 0.62 18.31 16 9 O -0.53 -19.82 13.38 -3.05 -0.04 -19.86 16 10 C 0.09 2.94 3.21 44.17 0.14 3.08 16 11 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 12 N -0.83 -27.22 8.94 -171.80 -1.54 -28.76 16 13 C -0.12 -4.71 4.78 30.60 0.15 -4.56 16 14 C 0.03 1.44 4.74 29.85 0.14 1.58 16 15 C -0.54 -29.79 9.11 25.60 0.23 -29.55 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 17 C 0.01 0.33 5.46 84.66 0.46 0.80 16 18 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 19 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 N -0.34 -9.58 12.72 -54.45 -0.69 -10.28 16 24 N -0.45 -9.29 7.13 -48.04 -0.34 -9.63 16 25 H 0.45 5.92 8.18 -213.34 -1.74 4.17 16 26 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.40 7.45 -2.39 -0.02 0.38 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.15 5.04 5.92 -2.91 -0.02 5.02 16 34 H 0.43 10.58 8.82 -92.71 -0.82 9.76 16 35 H 0.35 11.49 8.58 -89.69 -0.77 10.72 16 36 H 0.36 11.85 7.55 -89.69 -0.68 11.17 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.01 0.33 6.87 -2.39 -0.02 0.32 16 40 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -68.58 341.89 -0.36 -68.94 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -2.93 Total: 36.23 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.54 Total: -8.14 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -3.96 Total: -122.62 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.58 -0.36 -68.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568979247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.303 kcal (2) G-P(sol) polarization free energy of solvation -68.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds