Wall clock time and date at job start Tue Mar 31 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46826 * 2 1 4 4 H 1.08997 * 109.47107 * 186.25742 * 3 2 1 5 5 C 1.50702 * 109.46984 * 306.26128 * 3 2 1 6 6 H 1.08001 * 120.00104 * 120.00648 * 5 3 2 7 7 C 1.37882 * 119.99830 * 299.99826 * 5 3 2 8 8 N 1.31512 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99941 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47029 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47201 * 120.00200 * 9 7 5 12 12 H 1.48501 * 109.46900 * 240.00061 * 9 7 5 13 13 N 1.46897 * 109.47225 * 66.25866 * 3 2 1 14 14 C 1.46897 * 111.00143 * 88.55920 * 13 3 2 15 15 C 1.50697 * 109.47650 * 174.82437 * 14 13 3 16 16 O 1.21309 * 119.99937 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00560 * 179.97438 * 15 14 13 18 18 C 1.40762 * 120.00334 * 183.77024 * 17 15 14 19 19 C 1.40253 * 126.08017 * 34.16877 * 18 17 15 20 20 C 1.50709 * 125.83083 * 0.04946 * 19 18 17 21 21 N 1.30826 * 108.33414 * 180.30296 * 19 18 17 22 22 N 1.40065 * 108.36934 * 359.74664 * 21 19 18 23 23 H 0.97006 * 126.04977 * 180.02562 * 22 21 19 24 24 C 1.35754 * 126.08181 * 214.03022 * 18 17 15 25 25 C 1.50698 * 126.21766 * 359.96152 * 24 18 17 26 26 H 1.08998 * 109.46995 * 184.83218 * 1 2 3 27 27 H 1.08995 * 109.47032 * 304.83121 * 1 2 3 28 28 H 1.09002 * 109.47175 * 64.83787 * 1 2 3 29 29 H 1.08997 * 109.47227 * 240.00108 * 2 1 3 30 30 H 1.08995 * 109.47129 * 119.99480 * 2 1 3 31 31 H 0.96995 * 120.00066 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00099 * 324.60755 * 13 3 2 33 33 H 1.08997 * 109.47471 * 54.82246 * 14 13 3 34 34 H 1.09004 * 109.47032 * 294.82571 * 14 13 3 35 35 H 0.97003 * 119.99314 * 3.76911 * 17 15 14 36 36 H 1.09004 * 109.46724 * 263.07777 * 20 19 18 37 37 H 1.08993 * 109.47431 * 23.07891 * 20 19 18 38 38 H 1.08999 * 109.46886 * 143.08509 * 20 19 18 39 39 H 1.08998 * 109.47279 * 269.71693 * 25 24 18 40 40 H 1.08998 * 109.47172 * 149.70958 * 25 24 18 41 41 H 1.09008 * 109.46966 * 29.72145 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1242 1.4446 -0.1120 5 6 1.4150 2.1962 -1.1457 6 1 0.8093 3.0690 -0.9514 7 6 1.6168 1.7716 -2.4419 8 7 2.3541 0.7086 -2.6784 9 14 0.8428 2.7062 -3.8620 10 1 0.0657 3.8557 -3.3331 11 1 1.9096 3.2038 -4.7672 12 1 -0.0629 1.8016 -4.6148 13 7 1.6774 2.0901 1.2677 14 6 2.7155 1.8748 2.2846 15 6 2.3720 2.6560 3.5266 16 8 1.3613 3.3260 3.5615 17 7 3.1870 2.6096 4.5990 18 6 2.8268 3.2748 5.7861 19 6 1.5243 3.4338 6.2812 20 6 0.2649 2.9193 5.6326 21 7 1.5888 4.1096 7.3996 22 7 2.9333 4.4014 7.6621 23 1 3.2721 4.8927 8.4268 24 6 3.6787 3.8742 6.6567 25 6 5.1784 3.9470 6.5275 26 1 -0.3633 -1.0240 0.0866 27 1 -0.3633 0.5869 0.8435 28 1 -0.3634 0.4369 -0.9302 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 2.4964 0.4101 -3.5902 32 1 0.7789 1.7677 1.5945 33 1 3.6777 2.2110 1.8984 34 1 2.7722 0.8135 2.5269 35 1 4.0218 2.1177 4.5527 36 1 -0.1960 3.7174 5.0505 37 1 0.5095 2.0850 4.9753 38 1 -0.4295 2.5838 6.4028 39 1 5.6279 3.0858 7.0219 40 1 5.5392 4.8634 6.9946 41 1 5.4527 3.9446 5.4726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569138210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:23 Heat of formation + Delta-G solvation = 14.523765 kcal Electronic energy + Delta-G solvation = -22085.053661 eV Core-core repulsion = 18807.620479 eV Total energy + Delta-G solvation = -3277.433182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 6.72 seconds Orbital eigenvalues (eV) -42.48375 -40.40679 -38.02263 -35.64681 -34.48336 -34.19767 -32.54077 -31.54452 -29.10002 -28.65740 -27.78229 -26.36460 -24.97753 -22.29890 -21.64829 -21.10765 -20.36463 -18.70556 -18.45328 -17.57260 -16.92497 -16.77374 -16.59963 -16.02108 -15.59571 -15.25940 -14.74325 -14.62421 -14.46805 -14.16929 -14.09202 -13.81606 -13.57529 -13.33863 -13.20131 -12.98634 -12.82972 -12.81446 -12.61644 -12.39707 -11.95179 -11.91155 -11.64228 -11.37010 -11.22694 -11.00512 -10.57553 -10.38233 -10.20285 -8.90722 -8.77973 -8.02209 -6.08384 0.74899 1.37972 1.42907 1.46638 1.57774 1.76995 2.02747 2.33619 2.50684 3.27018 3.64645 3.79630 3.85814 3.97744 4.14629 4.44112 4.48981 4.54835 4.60683 4.68621 4.73234 4.78254 4.79372 4.81683 4.90459 5.08051 5.15231 5.16011 5.37459 5.39456 5.46845 5.73143 5.79956 5.80953 5.89092 6.35580 6.40262 6.49695 6.68944 6.75201 6.88471 7.02900 7.40585 7.58983 9.03028 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029227 B = 0.003571 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.788975 B = 7838.155239 C = 8004.649547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.012 0.988 5 C -0.498 4.498 6 H 0.044 0.956 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.680 5.680 14 C 0.049 3.951 15 C 0.510 3.490 16 O -0.539 6.539 17 N -0.634 5.634 18 C -0.028 4.028 19 C 0.074 3.926 20 C -0.048 4.048 21 N -0.319 5.319 22 N -0.464 5.464 23 H 0.456 0.544 24 C 0.080 3.920 25 C -0.088 4.088 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.259 0.741 32 H 0.335 0.665 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.423 0.577 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 1.384 19.808 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 C 0.115 3.885 4 H 0.030 0.970 5 C -0.537 4.537 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.557 5.557 9 Si 0.772 3.228 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.313 5.313 14 C -0.084 4.084 15 C 0.297 3.703 16 O -0.414 6.414 17 N -0.284 5.284 18 C -0.132 4.132 19 C -0.093 4.093 20 C -0.107 4.107 21 N -0.144 5.144 22 N -0.177 5.177 23 H 0.304 0.696 24 C -0.051 4.051 25 C -0.147 4.147 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.261 0.739 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.355 2.860 20.397 21.554 hybrid contribution 0.354 -0.774 -1.157 1.437 sum 6.709 2.086 19.239 20.482 Atomic orbital electron populations 1.21452 0.96499 0.99147 1.00631 1.21962 0.96104 0.99740 0.99888 1.19013 0.94392 0.89416 0.85710 0.97021 1.21306 1.30115 1.11217 0.91086 0.93738 1.25472 0.96071 0.95918 1.00556 1.69980 1.40314 1.25073 1.20383 0.85704 0.78343 0.78844 0.79916 1.20058 1.20840 1.20760 1.60352 1.04147 1.63601 1.03186 1.21767 0.98249 0.98254 0.90089 1.21027 0.83162 0.81849 0.84246 1.90728 1.27299 1.41314 1.82092 1.42611 1.24772 1.52340 1.08704 1.17418 0.92489 1.10239 0.93078 1.22483 0.96425 0.97976 0.92459 1.20119 0.91551 1.00871 0.98123 1.77190 0.97108 1.21902 1.18188 1.46007 1.03387 1.46272 1.22026 0.69623 1.21305 0.96495 0.96607 0.90692 1.20614 0.83728 1.05277 1.05040 0.93662 0.93707 0.94426 0.91701 0.94682 0.93196 0.84537 0.87862 0.91153 0.73888 0.91367 0.91580 0.91340 0.87736 0.88700 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.37 71.98 0.67 -4.31 16 2 C -0.14 -6.11 5.50 30.60 0.17 -5.94 16 3 C 0.22 10.69 2.34 44.17 0.10 10.79 16 4 H 0.01 0.61 7.66 -2.39 -0.02 0.60 16 5 C -0.50 -27.19 7.41 25.60 0.19 -27.01 16 6 H 0.04 2.56 7.81 -2.91 -0.02 2.53 16 7 C 0.02 0.99 5.20 84.66 0.44 1.43 16 8 N -0.92 -51.06 11.39 21.45 0.24 -50.81 16 9 Si 0.94 44.15 29.54 68.60 2.03 46.18 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 N -0.68 -28.46 5.78 -499.48 -2.89 -31.35 16 14 C 0.05 1.56 6.01 85.56 0.51 2.07 16 15 C 0.51 15.76 6.92 87.66 0.61 16.37 16 16 O -0.54 -20.84 11.85 -3.12 -0.04 -20.87 16 17 N -0.63 -14.63 5.40 -304.05 -1.64 -16.27 16 18 C -0.03 -0.72 6.51 37.62 0.24 -0.47 16 19 C 0.07 2.19 6.87 43.20 0.30 2.49 16 20 C -0.05 -1.45 8.38 71.24 0.60 -0.85 16 21 N -0.32 -8.88 12.69 -47.14 -0.60 -9.48 16 22 N -0.46 -8.85 7.40 -47.30 -0.35 -9.20 16 23 H 0.46 5.08 8.96 -213.34 -1.91 3.17 16 24 C 0.08 1.47 7.26 41.37 0.30 1.77 16 25 C -0.09 -0.74 10.38 71.24 0.74 0.00 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.74 6.34 -2.39 -0.02 1.72 16 28 H 0.04 1.75 7.16 -2.39 -0.02 1.73 16 29 H 0.06 3.29 6.26 -2.39 -0.01 3.27 16 30 H 0.03 1.36 7.69 -2.39 -0.02 1.34 16 31 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.34 13.96 6.42 -89.69 -0.58 13.38 16 33 H 0.10 3.10 7.92 -2.39 -0.02 3.08 16 34 H 0.07 1.93 7.71 -2.38 -0.02 1.91 16 35 H 0.42 6.44 8.83 -92.71 -0.82 5.62 16 36 H 0.07 2.31 7.34 -2.38 -0.02 2.30 16 37 H 0.07 2.04 6.25 -2.39 -0.01 2.03 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -70.77 332.88 -0.60 -71.37 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -2.23 Total: 24.10 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 4.88 Total: -3.66 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -5.23 Total: -117.11 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.04 Total: -20.87 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.77 -0.60 -71.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569138210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.892 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.72 seconds