Wall clock time and date at job start Tue Mar 31 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36241 * 117.00134 * 2 1 4 4 C 1.37980 * 120.79836 * 270.03176 * 3 2 1 5 5 N 1.38740 * 119.97282 * 359.97438 * 4 3 2 6 6 N 1.34366 * 120.05468 * 179.97438 * 4 3 2 7 7 C 1.30225 * 121.90288 * 359.97438 * 6 4 3 8 8 N 1.35786 * 121.67694 * 359.71979 * 7 6 4 9 9 H 0.96991 * 120.14786 * 180.29276 * 8 7 6 10 10 C 1.38059 * 119.70448 * 0.55888 * 8 7 6 11 11 N 1.31875 * 120.87313 * 179.72862 * 10 8 7 12 12 C 1.46498 * 120.00186 * 5.49586 * 11 10 8 13 13 C 1.53005 * 109.46974 * 115.25553 * 12 11 10 14 14 C 1.53005 * 109.47086 * 300.00088 * 13 12 11 15 15 C 1.52992 * 109.46840 * 60.00116 * 13 12 11 16 16 C 1.53001 * 109.46864 * 180.02562 * 13 12 11 17 17 C 1.50704 * 109.46857 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00019 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99962 * 180.02562 * 17 16 13 20 20 N 1.31516 * 120.00074 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99871 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47070 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47116 * 120.00059 * 21 19 17 24 24 H 1.48507 * 109.46824 * 239.99679 * 21 19 17 25 25 H 1.08997 * 109.46598 * 299.99201 * 1 2 3 26 26 H 1.08996 * 109.47353 * 59.99843 * 1 2 3 27 27 H 1.09002 * 109.47038 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99839 * 0.02562 * 5 4 3 29 29 H 0.97002 * 119.99692 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.16263 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46911 * 355.25810 * 12 11 10 32 32 H 1.09000 * 109.47752 * 235.25773 * 12 11 10 33 33 H 1.09001 * 109.46811 * 60.00388 * 14 13 12 34 34 H 1.08998 * 109.47070 * 179.97438 * 14 13 12 35 35 H 1.08993 * 109.47113 * 300.00215 * 14 13 12 36 36 H 1.09000 * 109.46863 * 60.00406 * 15 13 12 37 37 H 1.09008 * 109.46963 * 179.97438 * 15 13 12 38 38 H 1.08993 * 109.47413 * 300.00023 * 15 13 12 39 39 H 1.09000 * 109.47583 * 300.00049 * 16 13 12 40 40 H 1.09006 * 109.47190 * 60.00154 * 16 13 12 41 41 H 0.96996 * 119.99946 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0476 1.2139 0.0000 4 6 2.3677 1.8437 -1.1852 5 7 2.0600 1.2401 -2.3960 6 7 2.9773 3.0410 -1.1678 7 6 3.2828 3.6415 -0.0534 8 7 2.9964 3.0917 1.1547 9 1 3.2303 3.5605 1.9710 10 6 2.3758 1.8600 1.2159 11 7 2.0918 1.3023 2.3767 12 6 2.3244 2.0406 3.6205 13 6 0.9867 2.3039 4.3150 14 6 0.0869 3.1290 3.3927 15 6 0.3060 0.9710 4.6327 16 6 1.2295 3.0755 5.6137 17 6 -0.0882 3.3354 6.2974 18 1 -1.0068 2.9848 5.8505 19 6 -0.1209 4.0206 7.4934 20 7 0.9978 4.4471 8.0378 21 14 -1.7541 4.3421 8.3412 22 1 -2.8552 3.7635 7.5300 23 1 -1.7459 3.7128 9.6862 24 1 -1.9595 5.8063 8.4809 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6197 0.3759 -2.4090 29 1 2.2853 1.6824 -3.2294 30 1 3.7729 4.6032 -0.0910 31 1 2.8093 2.9902 3.3941 32 1 2.9654 1.4529 4.2776 33 1 -0.0861 2.5796 2.4673 34 1 -0.8662 3.3162 3.8872 35 1 0.5718 4.0785 3.1663 36 1 0.9471 0.3833 5.2898 37 1 -0.6468 1.1586 5.1279 38 1 0.1331 0.4217 3.7073 39 1 1.8706 2.4881 6.2709 40 1 1.7142 4.0251 5.3869 41 1 0.9747 4.9288 8.8793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582132117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:56 Heat of formation + Delta-G solvation = -4.381288 kcal Electronic energy + Delta-G solvation = -22557.991854 eV Core-core repulsion = 19279.738887 eV Total energy + Delta-G solvation = -3278.252967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 6.99 seconds Orbital eigenvalues (eV) -41.94720 -39.07776 -38.72058 -36.93441 -35.04540 -34.19175 -32.55897 -30.63057 -28.92948 -28.00515 -27.76070 -26.96807 -25.13711 -24.58588 -22.67438 -19.99678 -19.70880 -19.23187 -18.39372 -18.15365 -17.51512 -16.79708 -16.52881 -16.43208 -15.77285 -15.55645 -15.25357 -15.12267 -14.90421 -14.43286 -14.30158 -13.96391 -13.66101 -13.22319 -12.87690 -12.72222 -12.65874 -12.57616 -12.48691 -12.33355 -12.03104 -11.69687 -11.50546 -11.40162 -11.00935 -10.85304 -10.53924 -10.52219 -10.05492 -9.77509 -8.17216 -8.00903 -6.22386 -0.00555 1.08127 1.38250 1.39815 1.51810 1.93770 2.42292 2.46883 2.56891 3.18058 3.20270 3.36700 3.88495 4.05836 4.24091 4.26057 4.43368 4.45936 4.55351 4.57701 4.65559 4.82355 4.86217 4.87679 4.95238 5.02222 5.11245 5.13337 5.33022 5.43208 5.48593 5.50341 5.63597 5.82237 5.89416 5.94321 6.29256 6.33639 6.51547 6.73753 6.91093 7.17101 7.34839 7.44713 8.96716 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.004075 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.002189 B = 6870.052213 C = 7284.658475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C -0.150 4.150 4 C 0.427 3.573 5 N -0.818 5.818 6 N -0.587 5.587 7 C 0.427 3.573 8 N -0.659 5.659 9 H 0.424 0.576 10 C 0.391 3.609 11 N -0.607 5.607 12 C 0.076 3.924 13 C -0.049 4.049 14 C -0.105 4.105 15 C -0.104 4.104 16 C 0.044 3.956 17 C -0.516 4.516 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.282 1.282 24 H -0.278 1.278 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.418 0.582 29 H 0.415 0.585 30 H 0.261 0.739 31 H 0.033 0.967 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.052 0.948 39 H -0.016 1.016 40 H -0.007 1.007 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -1.743 -22.777 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C -0.211 4.211 4 C 0.200 3.800 5 N -0.359 5.359 6 N -0.318 5.318 7 C 0.139 3.861 8 N -0.290 5.290 9 H 0.266 0.734 10 C 0.125 3.875 11 N -0.335 5.335 12 C -0.055 4.055 13 C -0.049 4.049 14 C -0.162 4.162 15 C -0.161 4.161 16 C 0.006 3.994 17 C -0.554 4.554 18 H 0.078 0.922 19 C -0.197 4.197 20 N -0.576 5.576 21 Si 0.780 3.220 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.204 1.204 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.250 0.750 29 H 0.247 0.753 30 H 0.277 0.723 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.003 0.997 40 H 0.011 0.989 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.436 -2.504 -23.019 23.409 hybrid contribution -0.665 0.788 1.926 2.185 sum 2.770 -1.716 -21.094 21.344 Atomic orbital electron populations 1.23045 0.81207 1.03042 0.99474 1.86240 1.19134 1.23378 1.93375 1.17523 1.19791 0.95886 0.87927 1.18476 0.87710 0.87243 0.86601 1.42063 1.65276 1.24292 1.04237 1.67809 1.25603 1.10654 1.27697 1.25814 0.85412 0.96965 0.77900 1.44696 1.53062 1.19696 1.11524 0.73383 1.20555 0.90442 0.81766 0.94733 1.73487 1.33189 1.30854 0.95976 1.21737 0.96501 0.95239 0.91986 1.20496 0.94066 0.95479 0.94893 1.21495 0.99377 0.97897 0.97473 1.21442 0.99194 0.95982 0.99476 1.18992 0.95519 0.93313 0.91577 1.21597 0.93985 1.34113 1.05684 0.92196 1.25859 0.99598 0.95977 0.98254 1.70096 1.28170 1.39854 1.19440 0.85555 0.80220 0.77875 0.78372 1.18904 1.20773 1.20409 0.95984 0.93374 0.88114 0.74986 0.75304 0.72309 0.94927 0.92968 0.94011 0.93760 0.94122 0.95179 0.94197 0.92893 0.99749 0.98869 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.14 113.37 1.26 1.95 16 2 O -0.31 -8.98 9.51 -96.30 -0.92 -9.89 16 3 C -0.15 -4.20 5.84 23.03 0.13 -4.06 16 4 C 0.43 9.20 7.78 132.28 1.03 10.22 16 5 N -0.82 -12.08 9.05 -55.22 -0.50 -12.58 16 6 N -0.59 -10.49 10.39 -195.92 -2.03 -12.53 16 7 C 0.43 5.82 12.39 180.10 2.23 8.05 16 8 N -0.66 -13.70 5.30 -195.38 -1.04 -14.74 16 9 H 0.42 8.17 6.32 -92.72 -0.59 7.58 16 10 C 0.39 11.71 7.37 134.14 0.99 12.70 16 11 N -0.61 -22.05 8.90 -344.03 -3.06 -25.12 16 12 C 0.08 2.90 5.24 86.38 0.45 3.36 16 13 C -0.05 -2.11 0.60 -52.18 -0.03 -2.14 16 14 C -0.11 -4.22 8.06 71.98 0.58 -3.64 16 15 C -0.10 -4.53 8.06 71.98 0.58 -3.95 16 16 C 0.04 2.31 4.04 29.85 0.12 2.43 16 17 C -0.52 -29.18 7.65 25.60 0.20 -28.98 16 18 H 0.06 3.32 5.68 -2.91 -0.02 3.31 16 19 C 0.00 0.01 5.46 84.65 0.46 0.47 16 20 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 21 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.02 16 28 H 0.42 5.58 8.17 -92.71 -0.76 4.82 16 29 H 0.42 4.21 8.95 -92.71 -0.83 3.38 16 30 H 0.26 0.36 8.06 -2.91 -0.02 0.34 16 31 H 0.03 1.09 5.47 -2.38 -0.01 1.08 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 34 H 0.04 1.90 6.62 -2.39 -0.02 1.89 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 1.80 6.62 -2.38 -0.02 1.79 16 38 H 0.05 2.19 7.60 -2.39 -0.02 2.17 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 41 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -76.23 335.35 1.67 -74.56 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -1.10 Total: 13.59 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 8.01 Total: -3.61 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.35 Total: -121.58 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.92 Total: -9.89 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -76.23 1.67 -74.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582132117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.181 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.99 seconds