Wall clock time and date at job start Tue Mar 31 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47505 * 2 1 4 4 N 1.46495 * 109.47231 * 120.00653 * 2 1 3 5 5 N 1.40510 * 127.01683 * 300.04088 * 4 2 1 6 6 H 0.97000 * 126.62026 * 359.95916 * 5 4 2 7 7 C 1.35018 * 106.77365 * 179.97438 * 5 4 2 8 8 N 1.30822 * 109.35038 * 359.72704 * 7 5 4 9 9 C 1.34141 * 110.10507 * 0.44697 * 8 7 5 10 10 N 1.33144 * 126.09757 * 179.82031 * 9 8 7 11 11 C 1.33005 * 119.99644 * 359.69012 * 10 9 8 12 12 O 1.21570 * 119.99915 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99590 * 180.02562 * 11 10 9 14 14 C 1.53002 * 109.46919 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47343 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47476 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47432 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00335 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00347 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99775 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46867 * 90.00546 * 21 19 17 23 23 H 1.48501 * 109.47216 * 210.00404 * 21 19 17 24 24 H 1.48498 * 109.47506 * 330.00641 * 21 19 17 25 25 H 1.09009 * 109.46990 * 300.00072 * 1 2 3 26 26 H 1.09002 * 109.47207 * 59.99242 * 1 2 3 27 27 H 1.08995 * 109.47539 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.46271 * 240.00124 * 2 1 3 29 29 H 1.08997 * 109.47058 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47507 * 300.00574 * 3 2 1 31 31 H 1.09000 * 109.46780 * 60.00480 * 3 2 1 32 32 H 1.08003 * 125.33080 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47237 * 300.00131 * 13 11 10 34 34 H 1.09000 * 109.47165 * 60.00285 * 13 11 10 35 35 H 1.09004 * 109.46930 * 299.99899 * 14 13 11 36 36 H 1.09000 * 109.47312 * 59.99955 * 14 13 11 37 37 H 1.08996 * 109.47261 * 300.00175 * 15 14 13 38 38 H 1.09000 * 109.46870 * 59.99786 * 15 14 13 39 39 H 1.08996 * 109.47340 * 300.00521 * 16 15 14 40 40 H 1.09000 * 109.46925 * 60.00213 * 16 15 14 41 41 H 0.97005 * 120.00087 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.7708 -0.3422 2.5345 6 1 1.2409 0.4070 2.8488 7 6 2.4131 -1.2510 3.2990 8 7 3.0186 -2.1164 2.5271 9 6 2.8097 -1.8097 1.2380 10 7 3.2819 -2.4763 0.1866 11 6 4.0427 -3.5521 0.3682 12 8 4.3065 -3.9269 1.4942 13 6 4.5776 -4.3062 -0.8218 14 6 5.4153 -5.4922 -0.3394 15 6 5.9578 -6.2583 -1.5475 16 6 6.7960 -7.4439 -1.0652 17 6 7.3309 -8.1981 -2.2552 18 1 7.0969 -7.8648 -3.2554 19 6 8.1192 -9.3136 -2.0670 20 7 8.5864 -9.9715 -3.1054 21 14 8.5246 -9.8895 -0.3368 22 1 7.4887 -10.8504 0.1204 23 1 9.8522 -10.5549 -0.3350 24 1 8.5551 -8.7214 0.5795 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6769 1.9562 0.8900 32 1 2.4221 -1.2641 4.3789 33 1 3.7459 -4.6706 -1.4248 34 1 5.1991 -3.6426 -1.4230 35 1 6.2470 -5.1282 0.2639 36 1 4.7935 -6.1557 0.2617 37 1 5.1260 -6.6223 -2.1504 38 1 6.5795 -5.5951 -2.1490 39 1 7.6279 -7.0795 -0.4625 40 1 6.1746 -8.1072 -0.4636 41 1 9.1413 -10.7560 -2.9730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591860700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:04 Heat of formation + Delta-G solvation = 41.596611 kcal Electronic energy + Delta-G solvation = -21096.846982 eV Core-core repulsion = 17820.587766 eV Total energy + Delta-G solvation = -3276.259216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.28313 -40.13386 -37.15372 -36.70359 -35.12901 -34.50330 -32.78740 -31.94578 -31.16079 -28.27334 -27.74894 -24.91105 -24.36493 -23.03768 -22.22045 -21.61650 -20.13000 -18.99967 -18.83058 -17.37902 -17.23947 -17.12369 -16.57480 -16.33397 -16.04991 -15.65619 -15.24209 -15.17235 -14.71606 -14.31229 -13.80542 -13.69536 -13.47419 -13.43135 -13.24827 -12.83720 -12.55292 -12.33632 -12.17735 -12.15258 -11.95274 -11.74099 -11.56215 -11.48235 -11.34735 -11.28952 -11.26569 -11.08912 -10.75037 -10.00733 -9.05628 -8.28759 -6.31799 -0.11196 0.14750 1.35287 1.36781 1.51192 1.54575 2.37604 2.53458 2.83206 3.06013 3.28700 3.50572 3.58749 3.86364 4.04831 4.11575 4.18862 4.20179 4.42736 4.45974 4.56065 4.66882 4.70947 4.75072 4.83983 4.87104 4.91757 5.04245 5.15140 5.18242 5.19568 5.22412 5.28705 5.59873 5.66359 5.68811 5.70669 6.27245 6.31063 6.48029 6.75011 6.99888 7.32590 7.77028 8.88022 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036006 B = 0.002675 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.470979 B =10463.130487 C =11033.628281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 C -0.160 4.160 4 N -0.394 5.394 5 N -0.461 5.461 6 H 0.474 0.526 7 C 0.385 3.615 8 N -0.598 5.598 9 C 0.581 3.419 10 N -0.683 5.683 11 C 0.479 3.521 12 O -0.577 6.577 13 C -0.106 4.106 14 C -0.092 4.092 15 C -0.092 4.092 16 C -0.014 4.014 17 C -0.531 4.531 18 H 0.036 0.964 19 C 0.004 3.996 20 N -0.950 5.950 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.254 1.254 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.047 0.953 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.297 0.703 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.014 0.986 40 H 0.013 0.987 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.235 32.850 15.351 43.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 C -0.217 4.217 4 N -0.198 5.198 5 N -0.188 5.188 6 H 0.327 0.673 7 C 0.090 3.910 8 N -0.333 5.333 9 C 0.221 3.779 10 N -0.451 5.451 11 C 0.265 3.735 12 O -0.456 6.456 13 C -0.145 4.145 14 C -0.131 4.131 15 C -0.130 4.130 16 C -0.052 4.052 17 C -0.569 4.569 18 H 0.054 0.946 19 C -0.193 4.193 20 N -0.591 5.591 21 Si 0.773 3.227 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.178 1.178 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.311 0.689 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.721 32.115 15.034 42.114 hybrid contribution 0.064 -0.112 0.640 0.653 sum -22.657 32.003 15.674 42.228 Atomic orbital electron populations 1.22215 0.91505 1.02851 1.05171 1.21904 0.96286 0.94189 0.82090 1.22213 1.01418 0.92942 1.05168 1.48590 1.47477 1.25967 0.97746 1.45502 1.48602 1.30170 0.94513 0.67265 1.27407 0.82161 0.80378 1.01022 1.72092 1.30260 1.29637 1.01355 1.21276 0.84172 0.83468 0.88963 1.69303 1.31009 1.18141 1.26629 1.21507 0.79033 0.83000 0.89962 1.90716 1.58144 1.69418 1.27290 1.21237 1.00613 0.96544 0.96132 1.21263 0.98576 0.95933 0.97294 1.21331 0.98663 0.96250 0.96734 1.19554 0.95435 0.94759 0.95437 1.21523 1.30669 1.11155 0.93554 0.94577 1.25997 0.95290 0.96432 1.01532 1.70063 1.36553 1.20235 1.32276 0.85665 0.77957 0.79144 0.79956 1.19066 1.20323 1.17840 0.90211 0.87993 0.93332 0.87167 0.93328 0.87990 0.90218 0.68850 0.88517 0.88529 0.93394 0.93322 0.92684 0.92720 0.96767 0.96856 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 9.48 71.98 0.68 0.08 16 2 C 0.15 1.37 3.76 44.99 0.17 1.54 16 3 C -0.16 -0.60 9.48 71.98 0.68 0.08 16 4 N -0.39 -5.41 3.37 -329.77 -1.11 -6.52 16 5 N -0.46 -1.49 7.26 -60.14 -0.44 -1.93 16 6 H 0.47 -3.41 8.96 -213.05 -1.91 -5.32 16 7 C 0.38 2.90 13.06 180.18 2.35 5.25 16 8 N -0.60 -15.24 9.18 -201.11 -1.85 -17.09 16 9 C 0.58 15.73 8.39 261.08 2.19 17.92 16 10 N -0.68 -23.47 10.17 -315.30 -3.21 -26.67 16 11 C 0.48 19.35 7.71 87.93 0.68 20.03 16 12 O -0.58 -26.91 14.50 -3.94 -0.06 -26.97 16 13 C -0.11 -3.91 5.78 29.85 0.17 -3.74 16 14 C -0.09 -3.91 4.50 30.59 0.14 -3.78 16 15 C -0.09 -4.25 5.15 30.59 0.16 -4.09 16 16 C -0.01 -0.78 4.04 29.84 0.12 -0.66 16 17 C -0.53 -33.62 9.66 25.60 0.25 -33.37 16 18 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 19 C 0.00 0.25 5.47 84.65 0.46 0.72 16 20 N -0.95 -63.09 13.96 21.45 0.30 -62.79 16 21 Si 0.95 48.64 27.47 68.60 1.88 50.53 16 22 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.25 -12.59 6.54 99.48 0.65 -11.94 16 25 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 26 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 1.55 7.81 -2.38 -0.02 1.53 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.30 -1.75 8.06 -2.91 -0.02 -1.78 16 33 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.05 2.11 8.10 -2.38 -0.02 2.10 16 36 H 0.05 2.14 8.10 -2.39 -0.02 2.12 16 37 H 0.05 2.47 8.14 -2.39 -0.02 2.46 16 38 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.01 0.76 7.20 -2.39 -0.02 0.74 16 40 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 41 H 0.27 16.42 8.31 -92.70 -0.77 15.65 16 Total: -1.00 -100.90 346.66 2.63 -98.27 By element: Atomic # 1 Polarization: -5.86 SS G_CDS: -0.95 Total: -6.81 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 8.05 Total: -0.02 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -6.30 Total: -115.00 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.06 Total: -26.97 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.88 Total: 50.53 kcal Total: -100.90 2.63 -98.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591860700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.865 kcal (2) G-P(sol) polarization free energy of solvation -100.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds