Wall clock time and date at job start Tue Mar 31 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.30715 * 125.52653 * 59.69861 * 4 2 1 6 6 N 1.40452 * 106.79151 * 179.85894 * 5 4 2 7 7 H 0.97000 * 126.82062 * 180.15327 * 6 5 4 8 8 C 1.34427 * 106.35268 * 0.39585 * 6 5 4 9 9 C 1.50697 * 125.95832 * 179.73505 * 8 6 5 10 10 N 1.46902 * 109.47044 * 95.02581 * 9 8 6 11 11 C 1.47908 * 110.99846 * 69.87457 * 10 9 8 12 12 C 1.53994 * 107.05640 * 214.15653 * 11 10 9 13 13 C 1.54595 * 105.13965 * 1.22464 * 12 11 10 14 14 O 1.42898 * 110.72562 * 263.59913 * 13 12 11 15 15 C 1.50700 * 110.72481 * 140.49217 * 13 12 11 16 16 H 1.07997 * 120.00088 * 241.45096 * 15 13 12 17 17 C 1.37879 * 119.99667 * 61.45375 * 15 13 12 18 18 N 1.31514 * 120.00319 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99694 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46770 * 90.00480 * 19 17 15 21 21 H 1.48503 * 109.47173 * 210.00021 * 19 17 15 22 22 H 1.48498 * 109.47491 * 330.00124 * 19 17 15 23 23 C 1.48532 * 110.99980 * 312.47892 * 10 9 8 24 24 N 1.30832 * 108.08191 * 359.75825 * 8 6 5 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09001 * 109.47460 * 215.02562 * 9 8 6 33 33 H 1.09004 * 109.47541 * 335.02505 * 9 8 6 34 34 H 1.09002 * 109.91699 * 333.50755 * 11 10 9 35 35 H 1.08999 * 109.91647 * 94.80552 * 11 10 9 36 36 H 1.08997 * 110.30869 * 120.13919 * 12 11 10 37 37 H 1.08999 * 110.30998 * 242.20851 * 12 11 10 38 38 H 0.96706 * 114.00197 * 298.54569 * 14 13 12 39 39 H 0.97001 * 120.00091 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.66360 * 278.15126 * 23 10 9 41 41 H 1.09001 * 110.66728 * 41.28310 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7794 -0.3625 -2.4648 6 7 2.4401 -1.2869 -3.2904 7 1 2.4481 -1.2983 -4.2603 8 6 3.0546 -2.1560 -2.4694 9 6 3.8888 -3.3367 -2.8947 10 7 5.3064 -2.9521 -2.9170 11 6 5.8189 -2.7375 -1.5462 12 6 6.8558 -1.6017 -1.6243 13 6 6.8721 -1.1712 -3.1091 14 8 7.9362 -1.8168 -3.8112 15 6 6.9883 0.3265 -3.2288 16 1 6.2029 0.8925 -3.7076 17 6 8.0973 0.9742 -2.7272 18 7 9.0539 0.2849 -2.1446 19 14 8.2416 2.8307 -2.8763 20 1 7.6348 3.4718 -1.6820 21 1 9.6745 3.2100 -2.9673 22 1 7.5305 3.2860 -4.0977 23 6 5.4966 -1.6614 -3.6270 24 7 2.8016 -1.7984 -1.2366 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.7456 -4.1557 -2.1898 33 1 3.5837 -3.6573 -3.8909 34 1 5.0016 -2.4494 -0.8851 35 1 6.2928 -3.6484 -1.1802 36 1 6.5517 -0.7677 -0.9919 37 1 7.8384 -1.9651 -1.3235 38 1 8.8168 -1.6033 -3.4734 39 1 9.8343 0.7406 -1.7921 40 1 5.5247 -1.8163 -4.7056 41 1 4.7107 -0.9554 -3.3590 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:33 Heat of formation + Delta-G solvation = 34.400731 kcal Electronic energy + Delta-G solvation = -23152.969811 eV Core-core repulsion = 19876.398559 eV Total energy + Delta-G solvation = -3276.571252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.08322 -38.42109 -35.77878 -34.80827 -32.13199 -32.02702 -31.40155 -29.28100 -28.05970 -27.14872 -26.02880 -24.09924 -23.62295 -21.15850 -20.08611 -19.57397 -19.33242 -17.72641 -17.13199 -15.72176 -15.38094 -14.88327 -14.84519 -14.59363 -14.24344 -14.02923 -13.60322 -13.27675 -13.05320 -12.41779 -12.37731 -12.16869 -11.89847 -11.72627 -11.48759 -11.30925 -11.21667 -11.10966 -10.95843 -10.90853 -10.67634 -10.47743 -10.37914 -9.94370 -9.84774 -9.64038 -9.29300 -9.19695 -8.61045 -8.16216 -7.95751 -6.22177 -4.30258 1.78004 2.81127 3.06628 3.20710 3.27946 3.31691 4.02977 4.28051 4.55831 4.66775 4.89433 5.05469 5.08480 5.14801 5.34935 5.49678 5.62270 5.66893 5.68469 5.81847 5.86017 5.92033 5.93218 6.05878 6.18681 6.24123 6.32423 6.43862 6.47034 6.50404 6.67590 6.81517 7.03535 7.20241 7.31474 7.44265 7.50314 7.54058 7.79861 8.14639 8.30400 8.71077 9.38311 9.52233 10.84927 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.006533 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.521749 B = 4285.141688 C = 5399.623918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.000 4.000 3 C -0.144 4.144 4 C 0.231 3.769 5 N -0.314 5.314 6 N -0.478 5.478 7 H 0.438 0.562 8 C 0.265 3.735 9 C 0.116 3.884 10 N -0.493 5.493 11 C 0.022 3.978 12 C -0.126 4.126 13 C 0.260 3.740 14 O -0.581 6.581 15 C -0.537 4.537 16 H 0.056 0.944 17 C 0.073 3.927 18 N -0.892 5.892 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.042 3.958 24 N -0.532 5.532 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.378 0.622 39 H 0.267 0.733 40 H 0.073 0.927 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 -3.485 2.536 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 C -0.203 4.203 4 C -0.052 4.052 5 N -0.143 5.143 6 N -0.196 5.196 7 H 0.284 0.716 8 C -0.016 4.016 9 C -0.016 4.016 10 N -0.216 5.216 11 C -0.106 4.106 12 C -0.165 4.165 13 C 0.219 3.781 14 O -0.389 6.389 15 C -0.576 4.576 16 H 0.074 0.926 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.085 4.085 24 N -0.261 5.261 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.228 0.772 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.194 -3.708 2.159 13.874 hybrid contribution 0.303 1.832 -0.038 1.857 sum -12.890 -1.876 2.122 13.198 Atomic orbital electron populations 1.21806 0.93611 1.02011 1.02414 1.19483 0.95691 0.95350 0.91580 1.21828 1.02003 0.94140 1.02296 1.24156 0.94999 0.92500 0.93516 1.77853 1.20580 1.13681 1.02225 1.48098 1.39338 1.21835 1.10310 0.71644 1.25630 0.94260 0.95322 0.86355 1.21377 0.86549 0.91333 1.02328 1.65175 1.10235 1.31428 1.14721 1.23144 0.98805 0.99712 0.88905 1.22887 0.97448 0.95344 1.00798 1.19271 0.82865 0.89759 0.86183 1.86122 1.18326 1.72720 1.61709 1.21526 1.05374 0.91969 1.38684 0.92550 1.24964 0.95393 0.98740 0.93855 1.69725 1.08998 1.35935 1.38502 0.86518 0.77395 0.85066 0.78595 1.20544 1.20911 1.19846 1.23388 0.98760 0.87877 0.98478 1.70388 1.19724 1.15589 1.20446 0.92030 0.91709 0.92687 0.88651 0.91976 0.91990 0.91744 0.87642 0.88787 0.92268 0.91570 0.92277 0.91499 0.77240 0.92322 0.90838 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.18 37.16 0.34 -1.16 16 2 C 0.00 0.00 3.39 -91.78 -0.31 -0.31 16 3 C -0.14 -1.86 9.17 37.15 0.34 -1.52 16 4 C 0.23 3.82 6.65 -156.84 -1.04 2.78 16 5 N -0.31 -5.25 12.80 32.42 0.41 -4.83 16 6 N -0.48 -7.23 6.53 32.62 0.21 -7.02 16 7 H 0.44 5.34 8.96 -182.33 -1.63 3.70 16 8 C 0.26 4.24 5.39 -155.70 -0.84 3.40 16 9 C 0.12 1.68 6.11 -4.98 -0.03 1.65 16 10 N -0.49 -9.19 5.54 -231.88 -1.28 -10.47 16 11 C 0.02 0.43 6.46 -2.75 -0.02 0.41 16 12 C -0.13 -2.98 5.26 -25.37 -0.13 -3.11 16 13 C 0.26 6.47 0.95 -89.91 -0.09 6.39 16 14 O -0.58 -15.20 13.09 -35.23 -0.46 -15.66 16 15 C -0.54 -14.60 8.15 -34.44 -0.28 -14.88 16 16 H 0.06 1.55 7.78 -52.49 -0.41 1.14 16 17 C 0.07 1.96 5.28 -17.82 -0.09 1.87 16 18 N -0.89 -24.02 11.00 55.43 0.61 -23.42 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.04 0.90 5.46 -1.90 -0.01 0.89 16 24 N -0.53 -9.31 9.86 -8.16 -0.08 -9.39 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.38 8.08 -51.93 -0.42 0.96 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.17 6.03 -51.93 -0.31 0.86 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.51 7.84 -51.93 -0.41 1.10 16 37 H 0.07 1.65 7.98 -51.93 -0.41 1.23 16 38 H 0.38 10.01 7.46 45.56 0.34 10.35 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.05 1.03 5.45 -51.93 -0.28 0.75 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -30.31 330.43 -9.70 -40.00 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.90 Total: 13.39 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.16 Total: -3.59 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.13 Total: -55.13 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.46 Total: -15.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.31 -9.70 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.402 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds