Wall clock time and date at job start Tue Mar 31 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47570 * 2 1 4 4 C 1.50701 * 109.47099 * 120.00215 * 2 1 3 5 5 N 1.30709 * 125.52618 * 299.95533 * 4 2 1 6 6 N 1.40449 * 106.79051 * 179.78402 * 5 4 2 7 7 H 0.97003 * 126.81817 * 180.26059 * 6 5 4 8 8 C 1.34419 * 106.35541 * 0.40185 * 6 5 4 9 9 C 1.50706 * 125.96382 * 179.85790 * 8 6 5 10 10 N 1.46900 * 109.46923 * 94.68829 * 9 8 6 11 11 C 1.47443 * 110.99763 * 69.87900 * 10 9 8 12 12 C 1.54321 * 107.23346 * 123.25490 * 11 10 9 13 13 C 1.55144 * 103.02001 * 22.28114 * 12 11 10 14 14 O 1.42895 * 110.98745 * 82.47459 * 13 12 11 15 15 C 1.50698 * 110.99244 * 206.25735 * 13 12 11 16 16 H 1.07993 * 120.00114 * 118.54282 * 15 13 12 17 17 C 1.37878 * 119.99769 * 298.55000 * 15 13 12 18 18 N 1.31518 * 120.00071 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99829 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47171 * 89.99603 * 19 17 15 21 21 H 1.48507 * 109.46876 * 209.99286 * 19 17 15 22 22 H 1.48493 * 109.47343 * 329.99382 * 19 17 15 23 23 C 1.47842 * 110.99535 * 190.71687 * 10 9 8 24 24 N 1.30830 * 108.07752 * 359.59543 * 8 6 5 25 25 H 1.09005 * 109.46680 * 300.00350 * 1 2 3 26 26 H 1.09000 * 109.47117 * 59.99124 * 1 2 3 27 27 H 1.08997 * 109.47452 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46680 * 239.99650 * 2 1 3 29 29 H 1.08999 * 109.46948 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46795 * 300.00164 * 3 2 1 31 31 H 1.08992 * 109.46788 * 60.00129 * 3 2 1 32 32 H 1.09000 * 109.47292 * 214.69691 * 9 8 6 33 33 H 1.09001 * 109.46828 * 334.69287 * 9 8 6 34 34 H 1.08992 * 109.88818 * 242.65793 * 11 10 9 35 35 H 1.09000 * 109.88930 * 3.85104 * 11 10 9 36 36 H 1.08994 * 110.70717 * 140.66636 * 12 11 10 37 37 H 1.09005 * 110.70791 * 263.72651 * 12 11 10 38 38 H 0.96706 * 114.00062 * 61.45880 * 14 13 12 39 39 H 0.97000 * 119.99820 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.38214 * 332.47218 * 23 10 9 41 41 H 1.08998 * 110.37515 * 94.81126 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7847 -0.3589 2.4648 6 7 2.4363 -1.2898 3.2903 7 1 2.4407 -1.3036 4.2602 8 6 3.0551 -2.1558 2.4693 9 6 3.8899 -3.3362 2.8946 10 7 3.0541 -4.5440 2.9179 11 6 2.6811 -4.9548 1.5519 12 6 3.1629 -6.4088 1.3641 13 6 3.2745 -6.9310 2.8208 14 8 2.0017 -7.3576 3.3105 15 6 4.2880 -8.0418 2.9199 16 1 5.1598 -7.9230 3.5461 17 6 4.1023 -9.2097 2.2111 18 7 3.0403 -9.3545 1.4488 19 14 5.3582 -10.5870 2.3346 20 1 4.9878 -11.4963 3.4487 21 1 5.3832 -11.3497 1.0606 22 1 6.7019 -10.0100 2.5925 23 6 3.7626 -5.6659 3.5699 24 7 2.8015 -1.7985 1.2366 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4423 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9562 0.8899 32 1 4.7093 -3.4747 2.1892 33 1 4.2945 -3.1551 3.8904 34 1 1.5990 -4.9045 1.4320 35 1 3.1677 -4.3060 0.8236 36 1 2.4303 -6.9881 0.8022 37 1 4.1332 -6.4323 0.8680 38 1 1.6118 -8.0870 2.8092 39 1 2.9095 -10.1764 0.9505 40 1 4.8407 -5.5507 3.4576 41 1 3.4941 -5.7225 4.6248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:35 Heat of formation + Delta-G solvation = 29.358838 kcal Electronic energy + Delta-G solvation = -22256.280534 eV Core-core repulsion = 18979.490649 eV Total energy + Delta-G solvation = -3276.789885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06325 -38.42197 -35.87023 -34.79097 -32.15233 -32.07798 -31.51303 -29.29443 -28.11604 -27.27580 -26.06690 -24.10054 -23.71891 -21.08033 -20.06064 -19.64853 -19.41970 -17.73008 -17.05832 -15.75403 -15.19638 -14.99043 -14.89465 -14.79678 -14.44925 -14.09890 -13.76258 -13.16249 -12.91880 -12.53673 -12.37802 -12.30059 -11.91730 -11.66283 -11.54838 -11.36860 -11.26835 -11.23408 -11.05351 -11.03768 -10.76784 -10.43818 -10.30603 -9.93838 -9.91052 -9.81437 -9.44035 -9.19848 -8.61373 -8.09683 -7.78490 -6.22460 -4.31196 1.68908 2.72364 2.97129 3.21320 3.28730 3.31084 3.95658 4.27943 4.55248 4.66617 4.80645 4.99578 5.03241 5.06257 5.23942 5.48621 5.50606 5.60094 5.70733 5.71794 5.75903 5.82874 5.90169 6.10704 6.12026 6.14983 6.18116 6.35755 6.48554 6.56611 6.62214 6.84469 7.05746 7.12993 7.38336 7.47113 7.54274 7.58174 7.80299 8.12746 8.23770 8.70924 9.37428 9.49358 10.84442 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.003632 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.931624 B = 7707.851252 C = 7943.228988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.001 4.001 3 C -0.141 4.141 4 C 0.230 3.770 5 N -0.320 5.320 6 N -0.476 5.476 7 H 0.439 0.561 8 C 0.310 3.690 9 C 0.120 3.880 10 N -0.524 5.524 11 C 0.043 3.957 12 C -0.143 4.143 13 C 0.252 3.748 14 O -0.580 6.580 15 C -0.538 4.538 16 H 0.061 0.939 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.060 3.940 24 N -0.536 5.536 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.378 0.622 39 H 0.267 0.733 40 H 0.052 0.948 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 15.845 -1.152 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 C -0.199 4.199 4 C -0.052 4.052 5 N -0.149 5.149 6 N -0.193 5.193 7 H 0.285 0.715 8 C 0.031 3.969 9 C -0.011 4.011 10 N -0.250 5.250 11 C -0.084 4.084 12 C -0.182 4.182 13 C 0.212 3.788 14 O -0.388 6.388 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.067 4.067 24 N -0.265 5.265 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.227 0.773 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.479 16.788 -0.697 16.867 hybrid contribution 1.369 -1.640 -0.109 2.139 sum -0.110 15.148 -0.806 15.169 Atomic orbital electron populations 1.21815 0.93381 1.02515 1.02359 1.19493 0.96033 0.95002 0.91664 1.21808 1.01215 0.94487 1.02417 1.24145 0.95138 0.92445 0.93511 1.77854 1.20606 1.14207 1.02237 1.47924 1.39188 1.21799 1.10366 0.71520 1.24288 0.93867 0.92897 0.85844 1.20765 0.92375 0.86477 1.01493 1.63644 1.39113 1.03207 1.18988 1.22887 1.00332 0.97447 0.87719 1.23260 1.00860 0.92873 1.01240 1.19520 0.82619 0.89373 0.87298 1.86131 1.36114 1.56224 1.60293 1.21516 1.07634 1.00394 1.28059 0.92073 1.24999 0.95611 0.98385 0.94059 1.69741 1.27391 1.27141 1.28940 0.86477 0.81519 0.81750 0.77542 1.20465 1.21103 1.19826 1.23033 0.95402 0.89325 0.98948 1.70391 1.20667 1.14874 1.20534 0.92026 0.91668 0.92300 0.88540 0.92580 0.91671 0.92019 0.90918 0.89049 0.92058 0.92690 0.90438 0.92485 0.77316 0.92344 0.93007 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.18 37.16 0.34 -1.12 16 2 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 3 C -0.14 -1.33 9.18 37.16 0.34 -0.98 16 4 C 0.23 3.44 6.65 -156.85 -1.04 2.39 16 5 N -0.32 -4.76 12.80 32.42 0.41 -4.34 16 6 N -0.48 -6.51 7.45 32.62 0.24 -6.26 16 7 H 0.44 4.60 8.96 -182.33 -1.63 2.97 16 8 C 0.31 4.74 7.24 -155.70 -1.13 3.62 16 9 C 0.12 1.78 5.17 -4.97 -0.03 1.76 16 10 N -0.52 -9.76 5.15 -232.69 -1.20 -10.96 16 11 C 0.04 0.88 6.38 -2.83 -0.02 0.86 16 12 C -0.14 -3.28 5.37 -24.91 -0.13 -3.42 16 13 C 0.25 6.11 0.87 -89.63 -0.08 6.03 16 14 O -0.58 -14.98 13.16 -35.23 -0.46 -15.45 16 15 C -0.54 -14.04 8.27 -34.44 -0.28 -14.33 16 16 H 0.06 1.57 7.79 -52.49 -0.41 1.17 16 17 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 18 N -0.89 -23.59 10.75 55.43 0.60 -23.00 16 19 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.06 1.22 5.86 -2.30 -0.01 1.20 16 24 N -0.54 -8.86 10.53 -8.16 -0.09 -8.95 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 33 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.05 1.06 6.79 -51.93 -0.35 0.71 16 36 H 0.08 1.91 7.54 -51.93 -0.39 1.52 16 37 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 38 H 0.38 9.88 7.56 45.56 0.34 10.22 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 41 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -29.43 335.50 -9.94 -39.36 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.03 Total: 11.76 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.45 Total: -2.52 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.03 Total: -53.51 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.46 Total: -15.45 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.43 -9.94 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.722 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds