Wall clock time and date at job start Tue Mar 31 2020 03:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47077 * 2 1 4 4 N 1.46504 * 109.47042 * 179.97438 * 3 2 1 5 5 N 1.40445 * 126.81901 * 90.02304 * 4 3 2 6 6 C 1.30715 * 106.79310 * 179.97438 * 5 4 3 7 7 N 1.33241 * 108.94302 * 0.02562 * 6 5 4 8 8 C 1.30834 * 109.83169 * 359.97438 * 7 6 5 9 9 C 1.50702 * 125.96277 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46635 * 269.95974 * 9 8 7 11 11 C 1.47441 * 111.00284 * 69.87618 * 10 9 8 12 12 C 1.54320 * 107.23553 * 123.25261 * 11 10 9 13 13 C 1.55141 * 103.01823 * 22.28245 * 12 11 10 14 14 O 1.42905 * 110.98905 * 82.47227 * 13 12 11 15 15 C 1.50702 * 110.99261 * 206.25100 * 13 12 11 16 16 H 1.07995 * 119.99452 * 118.54639 * 15 13 12 17 17 C 1.37871 * 120.00092 * 298.54979 * 15 13 12 18 18 N 1.31513 * 120.00016 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00055 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46887 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47211 * 119.99848 * 19 17 15 22 22 H 1.48496 * 109.47119 * 240.00328 * 19 17 15 23 23 C 1.47851 * 110.99681 * 190.71789 * 10 9 8 24 24 H 1.09001 * 109.47473 * 300.00069 * 1 2 3 25 25 H 1.09000 * 109.47156 * 60.00476 * 1 2 3 26 26 H 1.09005 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47207 * 239.99227 * 2 1 3 28 28 H 1.09005 * 109.47069 * 120.00004 * 2 1 3 29 29 H 1.08995 * 109.47403 * 60.00244 * 3 2 1 30 30 H 1.08998 * 109.47468 * 299.99751 * 3 2 1 31 31 H 1.08002 * 125.53168 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47294 * 29.95583 * 9 8 7 33 33 H 1.08989 * 109.47241 * 149.96014 * 9 8 7 34 34 H 1.08999 * 109.88749 * 242.65840 * 11 10 9 35 35 H 1.09004 * 109.88771 * 3.85066 * 11 10 9 36 36 H 1.09000 * 110.70254 * 140.66285 * 12 11 10 37 37 H 1.08996 * 110.70504 * 263.72957 * 12 11 10 38 38 H 0.96703 * 113.99486 * 61.45430 * 14 13 12 39 39 H 0.97003 * 120.00048 * 179.97438 * 18 17 15 40 40 H 1.09007 * 110.37274 * 332.46233 * 23 10 9 41 41 H 1.08996 * 110.37429 * 94.80452 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3471 1.4427 -1.1233 6 6 5.5751 1.4431 -0.6752 7 7 5.5493 1.4426 0.6570 8 6 4.3102 1.4423 1.0770 9 6 3.8636 1.4423 2.5163 10 7 3.7179 0.0572 2.9836 11 6 5.0321 -0.5995 3.1082 12 6 5.1590 -1.0958 4.5639 13 6 3.6824 -1.1958 5.0291 14 8 3.0936 -2.4262 4.6027 15 6 3.5755 -1.0391 6.5241 16 1 3.0100 -0.2194 6.9420 17 6 4.1997 -1.9421 7.3583 18 7 4.8880 -2.9405 6.8494 19 14 4.0678 -1.7474 9.2114 20 1 3.2433 -0.5531 9.5262 21 1 3.4294 -2.9559 9.7919 22 1 5.4253 -1.5786 9.7893 23 6 3.0414 0.0097 4.2974 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.4660 1.4430 -1.2857 32 1 4.6062 1.9556 3.1272 33 1 2.9063 1.9565 2.5997 34 1 5.0910 -1.4443 2.4220 35 1 5.8258 0.1149 2.8895 36 1 5.6407 -2.0731 4.5972 37 1 5.7088 -0.3758 5.1700 38 1 3.5259 -3.2138 4.9605 39 1 5.3275 -3.5756 7.4363 40 1 3.2238 0.9305 4.8516 41 1 1.9711 -0.1504 4.1676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:53 Heat of formation + Delta-G solvation = 39.453072 kcal Electronic energy + Delta-G solvation = -22803.712776 eV Core-core repulsion = 19527.360610 eV Total energy + Delta-G solvation = -3276.352166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96312 -38.39935 -35.73719 -34.88628 -32.15662 -31.98158 -31.77777 -29.47882 -28.12448 -26.80145 -25.81110 -24.06503 -22.37579 -21.48239 -20.71456 -19.66678 -19.49865 -17.09060 -16.87526 -15.78634 -15.41164 -15.11107 -14.89887 -14.69249 -14.47018 -14.17117 -13.72902 -13.40267 -13.00091 -12.55365 -12.47066 -12.24468 -12.14311 -11.81186 -11.50852 -11.47420 -11.26950 -11.23104 -11.04959 -10.78499 -10.75877 -10.42145 -10.30902 -9.88231 -9.80530 -9.56160 -9.45010 -9.20174 -8.62268 -8.09614 -7.78073 -6.22908 -4.31501 1.72987 2.41685 3.08852 3.19806 3.28869 3.32130 4.18259 4.29250 4.48751 4.70052 4.77281 4.87980 5.00437 5.05997 5.12419 5.28342 5.35866 5.57914 5.63910 5.68175 5.73214 5.90361 5.96172 6.07664 6.12018 6.15620 6.26356 6.44916 6.48637 6.59131 6.62097 6.83259 6.93336 7.05801 7.38205 7.47081 7.54101 7.58281 7.80061 8.12575 8.27714 8.70990 9.37264 9.48676 10.84036 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024296 B = 0.004623 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.171423 B = 6055.788630 C = 6656.481489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.133 3.867 4 N -0.367 5.367 5 N -0.330 5.330 6 C 0.194 3.806 7 N -0.543 5.543 8 C 0.302 3.698 9 C 0.122 3.878 10 N -0.521 5.521 11 C 0.043 3.957 12 C -0.143 4.143 13 C 0.253 3.747 14 O -0.580 6.580 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.060 3.940 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.213 0.787 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.378 0.622 39 H 0.266 0.734 40 H 0.051 0.949 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 7.805 -10.927 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.011 3.989 4 N -0.157 5.157 5 N -0.158 5.158 6 C -0.108 4.108 7 N -0.272 5.272 8 C 0.025 3.975 9 C -0.009 4.009 10 N -0.247 5.247 11 C -0.084 4.084 12 C -0.182 4.182 13 C 0.213 3.787 14 O -0.387 6.387 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.066 4.066 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.229 0.771 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.227 0.773 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.538 7.826 -12.144 15.144 hybrid contribution 0.885 0.058 1.900 2.097 sum -3.653 7.884 -10.244 13.433 Atomic orbital electron populations 1.21660 0.94451 1.02548 1.01678 1.21943 0.96496 0.95167 1.04551 1.21839 0.73687 0.99392 1.03990 1.50332 1.07657 1.53995 1.03741 1.77954 1.02087 1.27099 1.08698 1.25861 0.95678 0.98693 0.90617 1.70491 1.19795 1.25533 1.11338 1.24250 0.85924 0.94815 0.92542 1.20726 1.01002 0.93586 0.85628 1.63631 1.20634 1.11239 1.29150 1.22879 0.88613 0.98024 0.98881 1.23259 1.01153 1.01612 0.92214 1.19514 0.86805 0.81488 0.90938 1.86127 1.60963 1.16757 1.74900 1.21555 1.32733 1.12304 0.90922 0.92034 1.24990 0.93954 0.94782 0.99297 1.69747 1.33253 1.14729 1.35515 0.86435 0.77859 0.78229 0.84849 1.19683 1.20821 1.20907 1.23024 0.98683 0.98573 0.86370 0.92210 0.92922 0.91888 0.91584 0.89024 0.88710 0.89117 0.77072 0.91095 0.89322 0.92093 0.92868 0.90466 0.92506 0.77328 0.92405 0.93096 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.14 -1.67 6.26 -26.74 -0.17 -1.84 16 3 C 0.13 1.48 6.30 -4.04 -0.03 1.45 16 4 N -0.37 -5.32 3.64 -58.34 -0.21 -5.53 16 5 N -0.33 -5.03 12.70 29.29 0.37 -4.66 16 6 C 0.19 2.82 13.03 -91.81 -1.20 1.62 16 7 N -0.54 -9.00 10.73 -11.97 -0.13 -9.13 16 8 C 0.30 4.75 6.92 -155.70 -1.08 3.67 16 9 C 0.12 1.84 4.87 -4.97 -0.02 1.82 16 10 N -0.52 -9.49 5.15 -232.68 -1.20 -10.69 16 11 C 0.04 0.87 6.41 -2.84 -0.02 0.85 16 12 C -0.14 -3.26 5.37 -24.91 -0.13 -3.39 16 13 C 0.25 6.03 0.87 -89.63 -0.08 5.96 16 14 O -0.58 -14.72 13.16 -35.23 -0.46 -15.18 16 15 C -0.54 -13.90 8.27 -34.44 -0.28 -14.18 16 16 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 17 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 18 N -0.89 -23.50 10.75 55.43 0.60 -22.90 16 19 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 C 0.06 1.21 5.86 -2.30 -0.01 1.19 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.09 0.89 7.11 -51.93 -0.37 0.52 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.21 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 33 H 0.09 1.11 7.06 -51.94 -0.37 0.74 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.05 1.03 6.91 -51.93 -0.36 0.67 16 36 H 0.08 1.89 7.54 -51.93 -0.39 1.50 16 37 H 0.06 1.32 8.04 -51.93 -0.42 0.91 16 38 H 0.38 9.76 7.56 45.56 0.34 10.11 16 39 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 40 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -29.07 335.49 -9.47 -38.53 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -5.72 Total: 11.34 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.75 Total: -2.05 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.57 Total: -52.91 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.46 Total: -15.18 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.07 -9.47 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.988 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds