Wall clock time and date at job start Tue Mar 31 2020 02:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47475 * 2 1 4 4 H 1.08996 * 109.47310 * 55.00023 * 3 2 1 5 5 C 1.50694 * 109.47152 * 174.99917 * 3 2 1 6 6 H 1.08005 * 119.99964 * 119.99647 * 5 3 2 7 7 C 1.37878 * 120.00396 * 299.99903 * 5 3 2 8 8 N 1.31519 * 119.99642 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00475 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46888 * 59.99990 * 9 7 5 11 11 H 1.48495 * 109.47051 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47107 * 300.00067 * 9 7 5 13 13 N 1.46502 * 109.47115 * 295.00024 * 3 2 1 14 14 C 1.34774 * 120.00106 * 84.99858 * 13 3 2 15 15 O 1.21589 * 119.99648 * 0.02562 * 14 13 3 16 16 N 1.34779 * 119.99847 * 180.02562 * 14 13 3 17 17 C 1.39503 * 119.99751 * 174.33700 * 16 14 13 18 18 C 1.36105 * 126.21396 * 328.25028 * 17 16 14 19 19 C 1.50700 * 126.08990 * 359.94093 * 18 17 16 20 20 C 1.39767 * 107.82779 * 179.97438 * 18 17 16 21 21 N 1.30843 * 108.31990 * 359.97438 * 20 18 17 22 22 N 1.35244 * 126.21610 * 147.93868 * 17 16 14 23 23 C 1.46497 * 126.04658 * 0.02562 * 22 17 16 24 24 C 1.52999 * 109.47363 * 85.27773 * 23 22 17 25 25 H 1.09005 * 109.46751 * 60.00061 * 1 2 3 26 26 H 1.09004 * 109.46779 * 300.00154 * 1 2 3 27 27 H 1.08999 * 109.47565 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47089 * 120.00360 * 2 1 3 29 29 H 1.09002 * 109.46955 * 239.99329 * 2 1 3 30 30 H 0.96995 * 119.99744 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99834 * 264.99953 * 13 3 2 32 32 H 0.96991 * 120.00403 * 354.33512 * 16 14 13 33 33 H 1.09003 * 109.46979 * 95.33583 * 19 18 17 34 34 H 1.08996 * 109.47350 * 215.34100 * 19 18 17 35 35 H 1.09003 * 109.46830 * 335.34016 * 19 18 17 36 36 H 1.08003 * 125.84529 * 179.97438 * 20 18 17 37 37 H 1.09000 * 109.47241 * 205.28184 * 23 22 17 38 38 H 1.09001 * 109.46904 * 325.28113 * 23 22 17 39 39 H 1.08997 * 109.47077 * 180.02562 * 24 23 22 40 40 H 1.09008 * 109.46947 * 300.00419 * 24 23 22 41 41 H 1.09001 * 109.46833 * 60.00296 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8886 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3374 2.1734 9 14 6.0051 0.8797 1.3812 10 1 6.5006 2.2796 1.3808 11 1 6.3978 0.2154 2.6498 12 1 6.5967 0.1449 0.2344 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3411 2.6326 -0.4317 16 7 0.0786 3.2665 -2.5188 17 6 -1.2203 3.7489 -2.6806 18 6 -2.3483 3.2211 -2.1313 19 6 -2.4177 2.0085 -1.2393 20 6 -3.4310 4.0036 -2.5426 21 7 -2.9776 4.9637 -3.3072 22 7 -1.5869 4.8293 -3.4068 23 6 -0.6886 5.7030 -4.1658 24 6 -0.4495 5.1063 -5.5542 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.8292 -0.0611 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 0.7250 3.3645 -3.2353 33 1 -2.4087 2.3240 -0.1959 34 1 -3.3360 1.4584 -1.4447 35 1 -1.5584 1.3661 -1.4320 36 1 -4.4650 3.8432 -2.2750 37 1 -1.1412 6.6894 -4.2672 38 1 0.2620 5.7917 -3.6398 39 1 0.2192 5.7561 -6.1186 40 1 0.0030 4.1198 -5.4527 41 1 -1.4001 5.0176 -6.0801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597048286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:37 Heat of formation + Delta-G solvation = 36.184743 kcal Electronic energy + Delta-G solvation = -22855.854639 eV Core-core repulsion = 19579.360747 eV Total energy + Delta-G solvation = -3276.493892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.59728 -40.84094 -37.24606 -36.01721 -35.22938 -34.31315 -32.98678 -31.71319 -30.35947 -28.88671 -27.05903 -24.96219 -24.46623 -23.31538 -21.95629 -21.31234 -20.65128 -19.67732 -18.67835 -17.82951 -17.11516 -17.00920 -16.28829 -16.12949 -15.81476 -15.21952 -14.93871 -14.59466 -14.45818 -14.13022 -13.87523 -13.73314 -13.45515 -13.17161 -13.09692 -12.95245 -12.88655 -12.82206 -12.61529 -12.23371 -12.13276 -11.90284 -11.81495 -11.43377 -11.31081 -11.01051 -10.76681 -10.48394 -9.87982 -9.61773 -8.86563 -8.12832 -6.29509 0.78210 1.14536 1.48025 1.48756 1.56563 1.81794 2.02084 2.36981 2.45466 3.17011 3.41122 3.57752 4.07375 4.10490 4.31553 4.36374 4.42778 4.57763 4.64982 4.72033 4.79904 4.83236 4.90309 5.01585 5.04035 5.17252 5.18171 5.32637 5.36490 5.46510 5.56556 5.59037 5.65137 5.78127 5.86429 5.92966 6.07195 6.22925 6.24982 6.75034 6.78928 7.23618 7.38572 7.72479 8.92114 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025026 B = 0.004586 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.585470 B = 6103.684050 C = 6923.690739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.300 3.700 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.711 5.711 14 C 0.694 3.306 15 O -0.585 6.585 16 N -0.656 5.656 17 C 0.319 3.681 18 C -0.258 4.258 19 C -0.045 4.045 20 C 0.060 3.940 21 N -0.312 5.312 22 N -0.383 5.383 23 C 0.116 3.884 24 C -0.163 4.163 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.401 0.599 32 H 0.418 0.582 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.209 0.791 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 6.573 -14.621 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.196 3.804 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.365 5.365 14 C 0.394 3.606 15 O -0.461 6.461 16 N -0.310 5.310 17 C 0.098 3.902 18 C -0.272 4.272 19 C -0.102 4.102 20 C -0.125 4.125 21 N -0.134 5.134 22 N -0.171 5.171 23 C -0.004 4.004 24 C -0.221 4.221 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.256 0.744 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.226 0.774 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.713 7.514 -14.322 17.511 hybrid contribution 1.706 -0.697 0.408 1.887 sum -5.007 6.817 -13.913 16.283 Atomic orbital electron populations 1.21874 0.96732 0.99051 1.00983 1.21808 0.94074 0.99122 1.01142 1.18265 0.93308 0.88809 0.79983 0.98006 1.21533 0.91420 1.38973 1.06662 0.90985 1.25703 1.02969 0.94463 0.95082 1.70040 1.37004 1.38259 1.09817 0.85471 0.79477 0.78331 0.77467 1.19793 1.21438 1.18993 1.45411 1.13765 1.58670 1.18618 1.15970 0.83160 0.79045 0.82386 1.91017 1.51527 1.64468 1.39137 1.41708 1.10179 1.61305 1.17812 1.17408 0.85513 0.89510 0.97765 1.19894 0.91054 1.05307 1.10993 1.20137 1.00226 0.93134 0.96731 1.23955 1.00752 0.92186 0.95611 1.77302 0.87565 1.23817 1.24687 1.48902 1.05978 1.21040 1.41222 1.21992 0.92137 0.93812 0.92439 1.22173 1.03003 1.02063 0.94822 0.92297 0.95363 0.94171 0.91135 0.94229 0.92658 0.76436 0.74403 0.93573 0.92501 0.92901 0.77407 0.87433 0.88408 0.87746 0.92443 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.48 71.98 0.61 -4.96 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.30 14.58 2.24 44.24 0.10 14.68 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 5 C -0.55 -27.63 8.73 25.60 0.22 -27.41 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -50.85 11.30 21.45 0.24 -50.60 16 9 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 13 N -0.71 -27.20 5.03 -461.43 -2.32 -29.52 16 14 C 0.69 26.00 6.35 179.05 1.14 27.14 16 15 O -0.58 -26.08 9.23 -4.00 -0.04 -26.12 16 16 N -0.66 -18.85 5.33 -322.30 -1.72 -20.57 16 17 C 0.32 9.74 7.35 131.31 0.96 10.71 16 18 C -0.26 -8.36 5.79 -19.99 -0.12 -8.48 16 19 C -0.04 -1.53 8.26 71.24 0.59 -0.94 16 20 C 0.06 1.68 11.95 85.21 1.02 2.69 16 21 N -0.31 -8.94 12.56 -57.09 -0.72 -9.66 16 22 N -0.38 -10.11 3.62 -344.98 -1.25 -11.36 16 23 C 0.12 2.01 7.06 86.38 0.61 2.62 16 24 C -0.16 -2.12 10.24 71.98 0.74 -1.38 16 25 H 0.06 2.41 3.25 -2.38 -0.01 2.40 16 26 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 3.77 5.95 -2.38 -0.01 3.76 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.40 12.64 8.56 -92.71 -0.79 11.84 16 32 H 0.42 8.76 8.82 -92.72 -0.82 7.94 16 33 H 0.05 1.79 7.15 -2.39 -0.02 1.78 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.96 3.66 -2.39 -0.01 1.95 16 36 H 0.21 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -66.37 327.15 2.17 -64.20 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: -0.55 Total: 30.34 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.49 Total: 10.46 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.76 Total: -121.70 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.04 Total: -26.12 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -66.37 2.17 -64.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597048286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.383 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds