Wall clock time and date at job start Tue Mar 31 2020 02:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47333 * 2 1 4 4 C 1.53010 * 109.46711 * 240.00336 * 2 1 3 5 5 C 1.52999 * 109.47473 * 120.00583 * 2 1 3 6 6 N 1.46500 * 109.47203 * 54.25734 * 5 2 1 7 7 C 1.46509 * 119.99939 * 275.81643 * 6 5 2 8 8 C 1.50703 * 109.46839 * 269.99835 * 7 6 5 9 9 H 1.07999 * 119.99737 * 0.02562 * 8 7 6 10 10 C 1.37870 * 119.99688 * 180.02562 * 8 7 6 11 11 N 1.31525 * 120.00060 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00381 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47004 * 89.99904 * 12 10 8 14 14 H 1.48499 * 109.47523 * 209.99892 * 12 10 8 15 15 H 1.48499 * 109.47343 * 330.00421 * 12 10 8 16 16 C 1.34775 * 120.00274 * 95.81617 * 6 5 2 17 17 O 1.21277 * 120.00387 * 185.44159 * 16 6 5 18 18 C 1.50706 * 119.99491 * 5.44025 * 16 6 5 19 19 C 1.50703 * 109.46753 * 174.42296 * 18 16 6 20 20 N 1.33233 * 125.52785 * 89.99962 * 19 18 16 21 21 C 1.30834 * 109.82959 * 179.97438 * 20 19 18 22 22 N 1.34427 * 108.07678 * 0.02562 * 21 20 19 23 23 H 0.97002 * 126.82279 * 179.73127 * 22 21 20 24 24 N 1.30719 * 125.52286 * 269.99897 * 19 18 16 25 25 H 1.09008 * 109.46524 * 299.99920 * 1 2 3 26 26 H 1.08998 * 109.47480 * 59.99577 * 1 2 3 27 27 H 1.08997 * 109.47635 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46758 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.46845 * 300.00217 * 3 2 1 30 30 H 1.08997 * 109.46653 * 60.00077 * 3 2 1 31 31 H 1.09002 * 109.46815 * 304.12762 * 4 2 1 32 32 H 1.08998 * 109.47005 * 64.12886 * 4 2 1 33 33 H 1.08997 * 109.46784 * 184.13445 * 4 2 1 34 34 H 1.09003 * 109.46715 * 294.25977 * 5 2 1 35 35 H 1.08999 * 109.47307 * 174.26043 * 5 2 1 36 36 H 1.08996 * 109.47174 * 30.00105 * 7 6 5 37 37 H 1.08998 * 109.46784 * 149.99869 * 7 6 5 38 38 H 0.96997 * 119.99812 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.47120 * 54.42218 * 18 16 6 40 40 H 1.08998 * 109.47104 * 294.41746 * 18 16 6 41 41 H 1.08004 * 125.96433 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0401 -0.7214 1.2491 6 7 1.4422 -2.0569 1.3201 7 6 0.1133 -2.2342 1.9110 8 6 0.2514 -2.4929 3.3893 9 1 1.2309 -2.5219 3.8432 10 6 -0.8728 -2.6925 4.1620 11 7 -0.7524 -2.9188 5.4521 12 14 -2.5670 -2.6415 3.3770 13 1 -2.9423 -4.0040 2.9207 14 1 -3.5595 -2.1619 4.3721 15 1 -2.5462 -1.7184 2.2140 16 6 2.1146 -3.1226 0.8419 17 8 1.5817 -4.2115 0.8101 18 6 3.5288 -2.9609 0.3467 19 6 4.0962 -4.3126 -0.0026 20 7 4.0202 -4.8992 -1.1965 21 6 4.6149 -6.0639 -1.1575 22 7 5.0910 -6.2476 0.0862 23 1 5.5752 -7.0212 0.4149 24 7 4.7428 -5.0997 0.8166 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6174 -1.7253 -1.2871 32 1 1.7382 -0.1664 -2.1378 33 1 3.1274 -0.7859 -1.2131 34 1 1.7631 -0.1516 2.1362 35 1 3.1252 -0.8112 1.1992 36 1 -0.4775 -1.3319 1.7537 37 1 -0.3842 -3.0812 1.4388 38 1 -1.5433 -3.0588 5.9958 39 1 4.1366 -2.5022 1.1266 40 1 3.5333 -2.3252 -0.5386 41 1 4.7065 -6.7572 -1.9805 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601039929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:24 Heat of formation + Delta-G solvation = 22.713966 kcal Electronic energy + Delta-G solvation = -22927.654926 eV Core-core repulsion = 19650.576897 eV Total energy + Delta-G solvation = -3277.078029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.06591 -41.06907 -38.43585 -35.69222 -34.44371 -34.23587 -32.72318 -31.21223 -29.38725 -28.07489 -27.97353 -26.92426 -24.54176 -23.64180 -21.78535 -20.59631 -19.49493 -19.18663 -18.98110 -18.07737 -17.16433 -16.83863 -16.30298 -16.13156 -15.67813 -15.17054 -14.98160 -14.89197 -14.63953 -14.32638 -14.20295 -13.68581 -13.43233 -13.16205 -13.07350 -12.93269 -12.75117 -12.51560 -12.45277 -12.26973 -12.02702 -11.81767 -11.71003 -11.52407 -11.39225 -11.16500 -11.06489 -10.89442 -10.81425 -10.49827 -9.32997 -8.34383 -6.38063 0.66635 1.29454 1.33597 1.42076 1.70873 1.81555 1.87928 2.29347 2.43636 3.00124 3.17764 3.66022 3.72855 3.91474 3.94113 4.10586 4.19693 4.35774 4.47115 4.56775 4.64424 4.77912 4.83845 4.92378 4.93346 5.00824 5.01438 5.15934 5.17493 5.26122 5.27151 5.33370 5.42638 5.47449 5.50389 5.59885 5.70917 6.25262 6.29728 6.63064 6.69228 7.11214 7.21136 7.40022 8.82721 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.006582 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.551599 B = 4252.882045 C = 5681.731502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.131 4.131 4 C -0.142 4.142 5 C 0.108 3.892 6 N -0.588 5.588 7 C 0.224 3.776 8 C -0.534 4.534 9 H 0.029 0.971 10 C 0.012 3.988 11 N -0.945 5.945 12 Si 0.941 3.059 13 H -0.280 1.280 14 H -0.272 1.272 15 H -0.236 1.236 16 C 0.514 3.486 17 O -0.593 6.593 18 C -0.050 4.050 19 C 0.237 3.763 20 N -0.570 5.570 21 C 0.274 3.726 22 N -0.476 5.476 23 H 0.457 0.543 24 N -0.348 5.348 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.010 0.990 38 H 0.268 0.732 39 H 0.127 0.873 40 H 0.151 0.849 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 3.899 -17.503 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.189 4.189 4 C -0.199 4.199 5 C -0.014 4.014 6 N -0.318 5.318 7 C 0.102 3.898 8 C -0.573 4.573 9 H 0.047 0.953 10 C -0.186 4.186 11 N -0.586 5.586 12 Si 0.764 3.236 13 H -0.206 1.206 14 H -0.197 1.197 15 H -0.159 1.159 16 C 0.302 3.698 17 O -0.474 6.474 18 C -0.092 4.092 19 C -0.047 4.047 20 N -0.298 5.298 21 C -0.024 4.024 22 N -0.196 5.196 23 H 0.306 0.694 24 N -0.179 5.179 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.168 0.832 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 11.175 3.680 -16.900 20.592 hybrid contribution -0.674 -1.274 0.747 1.623 sum 10.501 2.406 -16.153 19.416 Atomic orbital electron populations 1.22062 0.95658 1.00958 1.01835 1.20979 0.95586 0.97014 0.94685 1.21759 1.01921 0.92681 1.02507 1.22015 1.01423 0.99324 0.97161 1.22001 0.98809 0.81814 0.98821 1.47784 1.18624 1.07654 1.57710 1.19493 0.82072 0.97215 0.91020 1.21629 0.93487 1.48827 0.93351 0.95281 1.25794 1.03619 0.94021 0.95130 1.70054 1.31210 1.50357 1.06933 0.85817 0.78857 0.79386 0.79580 1.20617 1.19724 1.15882 1.20644 0.88224 0.83710 0.77223 1.90635 1.70898 1.27903 1.57921 1.20281 0.91952 0.91336 1.05615 1.23568 0.95911 0.97365 0.87836 1.70300 1.25384 1.09558 1.24608 1.27091 0.90561 0.94868 0.89869 1.47980 1.45242 1.17109 1.09226 0.69423 1.77910 1.22972 0.96881 1.20094 0.93079 0.91161 0.94527 0.90801 0.91156 0.92658 0.95121 0.90800 0.90546 0.90914 0.88130 0.91950 0.97234 0.92346 0.85493 0.83179 0.70666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 6.98 71.98 0.50 -3.63 16 2 C -0.08 -1.95 0.85 -52.18 -0.04 -2.00 16 3 C -0.13 -2.26 8.47 71.98 0.61 -1.65 16 4 C -0.14 -3.10 6.84 71.99 0.49 -2.61 16 5 C 0.11 3.26 4.58 86.38 0.40 3.66 16 6 N -0.59 -24.48 2.00 -826.14 -1.65 -26.13 16 7 C 0.22 11.23 3.00 85.63 0.26 11.49 16 8 C -0.53 -32.29 9.94 25.60 0.25 -32.04 16 9 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 10 C 0.01 0.74 5.47 84.65 0.46 1.20 16 11 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 12 Si 0.94 45.78 27.47 68.60 1.88 47.67 16 13 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.24 -10.29 6.54 99.48 0.65 -9.63 16 16 C 0.51 22.26 6.40 87.66 0.56 22.82 16 17 O -0.59 -32.04 15.60 -3.02 -0.05 -32.09 16 18 C -0.05 -1.62 4.69 29.10 0.14 -1.48 16 19 C 0.24 8.19 6.64 138.63 0.92 9.11 16 20 N -0.57 -17.46 11.19 -191.80 -2.15 -19.60 16 21 C 0.27 5.60 13.13 180.36 2.37 7.97 16 22 N -0.48 -10.78 7.45 -60.49 -0.45 -11.23 16 23 H 0.46 6.29 8.96 -213.10 -1.91 4.38 16 24 N -0.35 -11.99 12.80 -51.33 -0.66 -12.64 16 25 H 0.05 1.48 7.72 -2.38 -0.02 1.46 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.24 5.76 -2.39 -0.01 1.23 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.03 0.85 6.74 -2.39 -0.02 0.84 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.34 6.49 -2.39 -0.02 1.32 16 34 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 35 H 0.10 2.42 6.11 -2.39 -0.01 2.40 16 36 H 0.06 2.87 4.37 -2.39 -0.01 2.86 16 37 H 0.01 0.53 6.78 -2.39 -0.02 0.51 16 38 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 39 H 0.13 3.56 7.34 -2.39 -0.02 3.54 16 40 H 0.15 3.82 4.67 -2.39 -0.01 3.81 16 41 H 0.28 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -90.23 326.39 3.24 -86.99 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -0.91 Total: 14.99 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.92 Total: 12.84 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -4.60 Total: -130.40 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.09 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Total: -90.23 3.24 -86.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601039929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.706 kcal (2) G-P(sol) polarization free energy of solvation -90.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds