Wall clock time and date at job start Tue Mar 31 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1 5 5 N 1.30506 * 125.64508 * 274.68811 * 4 3 2 6 6 C 1.34125 * 109.25043 * 179.89292 * 5 4 3 7 7 C 1.34668 * 108.02744 * 0.37268 * 6 5 4 8 8 N 1.35035 * 125.65286 * 94.99899 * 4 3 2 9 9 H 0.96998 * 126.40040 * 359.97438 * 8 4 3 10 10 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 11 11 O 1.21588 * 119.99858 * 179.97438 * 10 2 1 12 12 N 1.34773 * 119.99935 * 359.72710 * 10 2 1 13 13 C 1.46496 * 119.99973 * 180.02562 * 12 10 2 14 14 C 1.53005 * 109.47401 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46451 * 299.99639 * 14 13 12 16 16 C 1.52995 * 109.47100 * 59.99287 * 14 13 12 17 17 C 1.50696 * 109.47134 * 179.97438 * 14 13 12 18 18 H 1.08004 * 120.00332 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99857 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99888 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99895 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47298 * 60.00384 * 21 19 17 23 23 H 1.48505 * 109.46860 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47384 * 300.00387 * 21 19 17 25 25 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 26 26 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 27 27 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 28 28 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 29 29 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 30 30 H 1.08010 * 125.98855 * 180.18707 * 6 5 4 31 31 H 1.07998 * 126.59541 * 179.81245 * 7 6 5 32 32 H 0.97004 * 120.00018 * 359.97438 * 12 10 2 33 33 H 1.09007 * 109.47081 * 299.99672 * 13 12 10 34 34 H 1.08997 * 109.47795 * 59.99548 * 13 12 10 35 35 H 1.09002 * 109.47522 * 60.00510 * 15 14 13 36 36 H 1.09001 * 109.46796 * 179.97438 * 15 14 13 37 37 H 1.08993 * 109.47323 * 299.99846 * 15 14 13 38 38 H 1.09007 * 109.46813 * 60.00645 * 16 14 13 39 39 H 1.09004 * 109.46840 * 179.97438 * 16 14 13 40 40 H 1.08992 * 109.47827 * 300.00724 * 16 14 13 41 41 H 0.96995 * 119.99958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 7 3.4498 1.3241 -2.1668 6 6 3.3508 1.9077 -3.3703 7 6 2.2509 2.6847 -3.3675 8 7 1.6782 2.5557 -2.1309 9 1 0.8700 2.9944 -1.8223 10 6 2.1389 -1.1673 -0.0005 11 8 3.3548 -1.1672 -0.0010 12 7 1.4650 -2.3344 0.0045 13 6 2.1975 -3.6031 0.0045 14 6 1.2033 -4.7661 0.0114 15 6 0.3290 -4.6820 1.2642 16 6 0.3184 -4.6880 -1.2343 17 6 1.9568 -6.0711 0.0108 18 1 3.0368 -6.0712 0.0055 19 6 1.2674 -7.2652 0.0169 20 7 -0.0477 -7.2652 0.0227 21 14 2.2015 -8.8829 0.0153 22 1 3.0615 -8.9591 1.2236 23 1 1.2364 -10.0117 0.0221 24 1 3.0490 -8.9641 -1.2014 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5139 30 1 4.0351 1.7796 -4.1961 31 1 1.8897 3.2924 -4.1840 32 1 0.4950 -2.3344 0.0089 33 1 2.8208 -3.6628 -0.8878 34 1 2.8276 -3.6590 0.8922 35 1 -0.2161 -3.7381 1.2642 36 1 -0.3796 -5.5103 1.2689 37 1 0.9593 -4.7376 2.1516 38 1 0.9414 -4.7479 -2.1268 39 1 -0.3895 -5.5168 -1.2296 40 1 -0.2265 -3.7441 -1.2343 41 1 -0.5327 -8.1052 0.0267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601610670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:01 Heat of formation + Delta-G solvation = 13.952922 kcal Electronic energy + Delta-G solvation = -22333.897555 eV Core-core repulsion = 19056.439619 eV Total energy + Delta-G solvation = -3277.457936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.93659 -41.09631 -38.30294 -36.56601 -35.01946 -33.42120 -32.83293 -31.32283 -28.18095 -27.64155 -27.56536 -27.21120 -25.67851 -22.52853 -21.83415 -21.03210 -20.60483 -19.37675 -18.69368 -17.79469 -17.36699 -16.72020 -16.60334 -15.89458 -15.36487 -15.20918 -15.05772 -14.91527 -14.61093 -14.49563 -14.07294 -14.02415 -13.69926 -13.39058 -13.18226 -13.08943 -12.82386 -12.66865 -12.60166 -12.24372 -12.12077 -11.48363 -11.29504 -11.10105 -10.97146 -10.86209 -10.71135 -10.38766 -10.08611 -9.59756 -9.35552 -8.01518 -6.16923 1.00279 1.45126 1.45734 1.52834 1.75134 2.15024 2.31289 2.40288 2.48009 3.16817 3.21918 3.55157 4.06174 4.21072 4.35716 4.43296 4.47689 4.53277 4.61800 4.68983 4.72320 4.78891 4.86621 4.99863 5.05122 5.10841 5.13880 5.19870 5.38948 5.52302 5.65125 5.67044 5.67989 5.81710 5.92078 6.15222 6.22006 6.44723 6.58770 6.86280 7.06348 7.26828 7.50425 7.67117 8.97456 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030503 B = 0.003708 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.714396 B = 7550.384278 C = 7801.431424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.627 5.627 3 C 0.219 3.781 4 C 0.174 3.826 5 N -0.524 5.524 6 C -0.077 4.077 7 C -0.027 4.027 8 N -0.546 5.546 9 H 0.437 0.563 10 C 0.693 3.307 11 O -0.625 6.625 12 N -0.726 5.726 13 C 0.168 3.832 14 C 0.053 3.947 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.531 4.531 18 H 0.042 0.958 19 C 0.030 3.970 20 N -0.898 5.898 21 Si 0.945 3.055 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.279 1.279 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.145 0.855 29 H 0.086 0.914 30 H 0.171 0.829 31 H 0.219 0.781 32 H 0.404 0.596 33 H 0.026 0.974 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.018 0.982 38 H 0.013 0.987 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 22.136 -2.373 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.364 5.364 3 C 0.094 3.906 4 C -0.092 4.092 5 N -0.245 5.245 6 C -0.224 4.224 7 C -0.162 4.162 8 N -0.151 5.151 9 H 0.278 0.722 10 C 0.394 3.606 11 O -0.505 6.505 12 N -0.383 5.383 13 C 0.044 3.956 14 C 0.052 3.948 15 C -0.174 4.174 16 C -0.174 4.174 17 C -0.570 4.570 18 H 0.060 0.940 19 C -0.169 4.169 20 N -0.537 5.537 21 Si 0.772 3.228 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.205 1.205 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.104 0.896 30 H 0.188 0.812 31 H 0.236 0.764 32 H 0.242 0.758 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.982 21.430 -2.126 22.104 hybrid contribution -0.458 -0.611 -0.454 0.888 sum -5.440 20.819 -2.581 21.672 Atomic orbital electron populations 1.22025 0.77204 1.04085 1.03623 1.47035 1.07614 1.03499 1.78287 1.19665 0.99380 0.84699 0.86893 1.23943 0.90844 0.96214 0.98179 1.70307 1.24147 1.25066 1.04964 1.22793 1.01359 1.01717 0.96558 1.23306 0.97280 1.05699 0.89930 1.43229 1.23986 1.36118 1.11782 0.72153 1.16232 0.85078 0.81492 0.77787 1.90899 1.13689 1.86792 1.59112 1.45319 1.10227 1.04196 1.78596 1.21092 0.94414 0.81817 0.98317 1.18353 0.92192 0.90685 0.93592 1.21629 0.99464 0.99762 0.96573 1.21638 0.99479 0.99635 0.96696 1.21239 0.92589 0.91652 1.51512 0.93958 1.25427 0.95677 1.01267 0.94579 1.69888 1.06350 1.26862 1.50562 0.85823 0.78602 0.80008 0.78404 1.20217 1.20555 1.20467 0.90124 0.88141 0.92130 0.83727 0.89605 0.81178 0.76418 0.75796 0.95530 0.94683 0.94499 0.91737 0.96299 0.96807 0.91637 0.94762 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 10.20 127.77 1.30 2.43 16 2 N -0.63 -16.03 2.86 -869.31 -2.48 -18.51 16 3 C 0.22 4.75 6.03 85.63 0.52 5.27 16 4 C 0.17 4.25 7.73 138.13 1.07 5.32 16 5 N -0.52 -17.52 11.25 -188.13 -2.12 -19.63 16 6 C -0.08 -1.96 11.87 83.52 0.99 -0.97 16 7 C -0.03 -0.42 12.04 83.09 1.00 0.58 16 8 N -0.55 -7.97 6.15 -186.27 -1.15 -9.11 16 9 H 0.44 2.32 8.96 -92.71 -0.83 1.49 16 10 C 0.69 26.22 8.28 179.05 1.48 27.70 16 11 O -0.62 -29.81 15.92 -3.99 -0.06 -29.87 16 12 N -0.73 -27.32 4.82 -478.53 -2.31 -29.63 16 13 C 0.17 7.75 4.50 86.38 0.39 8.14 16 14 C 0.05 2.52 0.50 -52.93 -0.03 2.49 16 15 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 16 C -0.12 -5.37 8.08 71.98 0.58 -4.78 16 17 C -0.53 -29.05 8.01 25.60 0.21 -28.84 16 18 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 19 C 0.03 1.63 5.15 84.66 0.44 2.06 16 20 N -0.90 -48.25 9.35 21.45 0.20 -48.05 16 21 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 0.83 8.07 -2.39 -0.02 0.81 16 27 H 0.06 1.09 6.37 -2.38 -0.02 1.08 16 28 H 0.15 1.43 8.07 -2.39 -0.02 1.41 16 29 H 0.09 2.41 7.42 -2.39 -0.02 2.39 16 30 H 0.17 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.40 13.01 3.90 -92.71 -0.36 12.65 16 33 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 36 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 40 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 41 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -78.32 333.22 2.49 -75.82 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.14 Total: 18.81 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 8.53 Total: 14.73 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -7.85 Total: -124.94 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.06 Total: -29.87 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -78.32 2.49 -75.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601610670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.775 kcal (2) G-P(sol) polarization free energy of solvation -78.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds