Wall clock time and date at job start Tue Mar 31 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 N 1.46497 * 109.46823 * 180.02562 * 3 2 1 5 5 N 1.40068 * 126.04338 * 269.99247 * 4 3 2 6 6 C 1.30851 * 108.37134 * 180.02562 * 5 4 3 7 7 C 1.39757 * 108.32400 * 359.78196 * 6 5 4 8 8 C 1.35257 * 126.04924 * 90.00586 * 4 3 2 9 9 N 1.39467 * 126.21558 * 359.95249 * 8 4 3 10 10 C 1.34772 * 120.00222 * 180.02562 * 9 8 4 11 11 O 1.21297 * 120.00135 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00293 * 180.02562 * 10 9 8 13 13 N 1.46906 * 109.47093 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99973 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.46808 * 325.00209 * 14 13 12 16 16 C 1.53000 * 109.47120 * 84.99803 * 14 13 12 17 17 C 1.50694 * 109.47066 * 204.99831 * 14 13 12 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47221 * 299.99929 * 1 2 3 27 27 H 1.08998 * 109.47399 * 60.00448 * 1 2 3 28 28 H 1.08995 * 109.46825 * 240.00252 * 2 1 3 29 29 H 1.09002 * 109.47096 * 119.99952 * 2 1 3 30 30 H 1.09001 * 109.47102 * 59.99997 * 3 2 1 31 31 H 1.09002 * 109.47183 * 299.99899 * 3 2 1 32 32 H 1.08006 * 125.83621 * 180.02562 * 6 5 4 33 33 H 1.08003 * 126.08439 * 180.25831 * 7 6 5 34 34 H 0.97005 * 120.00488 * 0.02562 * 9 8 4 35 35 H 1.08993 * 109.47230 * 60.00296 * 12 10 9 36 36 H 1.08998 * 109.47345 * 299.99740 * 12 10 9 37 37 H 1.00904 * 110.99866 * 303.94661 * 13 12 10 38 38 H 1.08997 * 109.47359 * 180.02562 * 16 14 13 39 39 H 1.09007 * 109.47356 * 300.00024 * 16 14 13 40 40 H 1.09000 * 109.47156 * 59.99749 * 16 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3296 1.4424 1.1316 6 6 5.5762 1.4430 0.7338 7 6 5.5915 1.4383 -0.6636 8 6 4.3004 1.4427 -1.0945 9 7 3.8750 1.4422 -2.4227 10 6 4.7810 1.4420 -3.4205 11 8 5.9664 1.4419 -3.1634 12 6 4.3214 1.4419 -4.8557 13 7 5.4910 1.4411 -5.7445 14 6 5.0805 1.4404 -7.1550 15 1 4.1705 0.8512 -7.2682 16 6 4.8175 2.8773 -7.6103 17 6 6.1763 0.8393 -7.9968 18 1 7.0869 0.4927 -7.5308 19 6 6.0168 0.7326 -9.3623 20 7 4.9082 1.1550 -9.9298 21 14 7.3755 -0.0120 -10.4058 22 1 6.9604 -0.0128 -11.8317 23 1 8.6150 0.7910 -10.2511 24 1 7.6308 -1.4067 -9.9644 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.4447 1.4427 1.3758 33 1 6.4712 1.4336 -1.2901 34 1 2.9271 1.4419 -2.6285 35 1 3.7214 2.3319 -5.0451 36 1 3.7211 0.5520 -5.0450 37 1 6.0976 2.2223 -5.5446 38 1 4.5125 2.8767 -8.6567 39 1 4.0249 3.3121 -7.0014 40 1 5.7275 3.4666 -7.4970 41 1 4.7962 1.0802 -10.8904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602859703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:59 Heat of formation + Delta-G solvation = 45.814620 kcal Electronic energy + Delta-G solvation = -21524.607157 eV Core-core repulsion = 18248.530848 eV Total energy + Delta-G solvation = -3276.076309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53288 -39.43084 -35.90292 -35.75206 -34.70707 -32.56578 -31.51149 -29.86003 -28.54360 -26.51430 -25.50611 -25.00165 -22.42402 -22.04907 -20.79394 -20.25273 -19.82474 -18.25352 -16.82185 -16.17656 -15.85759 -15.70780 -15.17691 -14.95533 -14.68567 -14.31563 -13.95253 -13.67481 -13.41847 -13.21180 -12.93554 -12.69119 -12.52181 -12.28576 -11.80004 -11.75616 -11.68113 -11.26748 -10.97268 -10.94819 -10.85395 -10.70464 -10.58524 -10.20815 -10.00125 -9.66201 -9.07225 -9.03856 -8.39416 -8.08183 -7.38013 -6.02680 -4.05509 1.70875 2.06160 2.68068 3.00489 3.08806 3.35001 3.38098 3.42832 4.21923 4.42172 4.43403 4.68072 4.70370 4.81056 4.96550 5.11746 5.20354 5.26261 5.29596 5.46353 5.55301 5.59499 5.65871 5.66300 5.69726 5.80864 5.96646 6.17331 6.57233 6.74961 6.75298 6.94076 6.96929 7.14952 7.28598 7.66812 7.74021 7.82841 8.13202 8.18600 8.41781 8.51474 9.02068 9.60031 11.04578 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.003216 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.036267 B = 8703.630054 C = 9316.780044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.132 3.868 4 N -0.391 5.391 5 N -0.300 5.300 6 C 0.059 3.941 7 C -0.285 4.285 8 C 0.314 3.686 9 N -0.658 5.658 10 C 0.518 3.482 11 O -0.485 6.485 12 C 0.050 3.950 13 N -0.667 5.667 14 C 0.213 3.787 15 H 0.036 0.964 16 C -0.172 4.172 17 C -0.496 4.496 18 H 0.065 0.935 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.289 1.289 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.408 0.592 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.337 0.663 38 H 0.092 0.908 39 H 0.004 0.996 40 H 0.030 0.970 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 1.287 18.223 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C 0.010 3.990 4 N -0.179 5.179 5 N -0.122 5.122 6 C -0.126 4.126 7 C -0.317 4.317 8 C 0.094 3.906 9 N -0.307 5.307 10 C 0.306 3.694 11 O -0.355 6.355 12 C -0.083 4.083 13 N -0.299 5.299 14 C 0.106 3.894 15 H 0.053 0.947 16 C -0.231 4.231 17 C -0.535 4.535 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.539 5.539 21 Si 0.728 3.272 22 H -0.215 1.215 23 H -0.203 1.203 24 H -0.202 1.202 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.201 0.799 33 H 0.191 0.809 34 H 0.243 0.757 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.156 0.844 38 H 0.110 0.890 39 H 0.023 0.977 40 H 0.050 0.950 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.375 0.616 19.137 21.319 hybrid contribution 0.203 0.550 -1.515 1.625 sum -9.171 1.166 17.622 19.900 Atomic orbital electron populations 1.21705 0.94194 1.02633 1.02234 1.21969 0.96715 0.95849 1.03625 1.21712 0.74691 0.98364 1.04234 1.48657 1.05834 1.61070 1.02369 1.77399 1.01875 1.27292 1.05665 1.23772 0.95095 0.98672 0.95104 1.21729 0.96024 1.19105 0.94816 1.18131 0.91078 1.00885 0.80492 1.43212 1.11225 1.74225 1.02053 1.21348 0.85901 0.75008 0.87185 1.90639 1.16534 1.44853 1.83451 1.21777 0.96437 1.02504 0.87610 1.60620 1.13885 1.50143 1.05268 1.19231 0.96759 0.92392 0.81014 0.94654 1.22472 0.97431 0.98831 1.04355 1.21107 1.02593 1.38805 0.90994 0.91708 1.24939 0.95924 0.95720 0.97882 1.69863 1.25590 1.47615 1.10829 0.86523 0.82044 0.79835 0.78785 1.21478 1.20273 1.20217 0.91869 0.92260 0.92227 0.91366 0.90757 0.88440 0.89653 0.79886 0.80933 0.75716 0.92849 0.88185 0.84445 0.88989 0.97684 0.95046 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.14 -1.05 6.26 -26.73 -0.17 -1.21 16 3 C 0.13 1.05 6.25 -4.04 -0.03 1.03 16 4 N -0.39 -4.70 3.62 -60.40 -0.22 -4.92 16 5 N -0.30 -4.04 12.56 30.60 0.38 -3.66 16 6 C 0.06 0.76 12.01 -17.40 -0.21 0.55 16 7 C -0.29 -4.21 9.65 -39.78 -0.38 -4.60 16 8 C 0.31 4.26 7.66 -153.17 -1.17 3.09 16 9 N -0.66 -7.92 5.41 -11.47 -0.06 -7.99 16 10 C 0.52 7.96 7.83 -10.99 -0.09 7.88 16 11 O -0.49 -9.12 13.33 5.54 0.07 -9.05 16 12 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 13 N -0.67 -13.89 5.86 -109.22 -0.64 -14.53 16 14 C 0.21 5.13 2.57 -68.87 -0.18 4.95 16 15 H 0.04 0.91 7.80 -51.93 -0.40 0.50 16 16 C -0.17 -3.93 8.94 37.16 0.33 -3.59 16 17 C -0.50 -13.56 8.84 -34.44 -0.30 -13.86 16 18 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 19 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 20 N -0.90 -25.07 11.32 55.43 0.63 -24.44 16 21 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.51 7.50 -51.93 -0.39 0.12 16 32 H 0.18 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.17 2.84 5.83 -52.48 -0.31 2.53 16 34 H 0.41 3.45 7.96 -40.82 -0.33 3.12 16 35 H 0.05 0.76 7.44 -51.93 -0.39 0.37 16 36 H 0.10 1.48 8.05 -51.93 -0.42 1.06 16 37 H 0.34 7.03 8.17 -39.29 -0.32 6.71 16 38 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 39 H 0.00 0.08 7.46 -51.93 -0.39 -0.30 16 40 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -31.93 341.61 -7.84 -39.77 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.18 Total: 7.34 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.95 Total: -4.00 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.09 Total: -55.54 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.93 -7.84 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602859703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.580 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds