Wall clock time and date at job start Tue Mar 31 2020 03:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 N 1.46497 * 109.46823 * 180.02562 * 3 2 1 5 5 N 1.40068 * 126.04338 * 269.99247 * 4 3 2 6 6 C 1.30851 * 108.37134 * 180.02562 * 5 4 3 7 7 C 1.39757 * 108.32400 * 359.78196 * 6 5 4 8 8 C 1.35257 * 126.04924 * 90.00586 * 4 3 2 9 9 N 1.39467 * 126.21558 * 359.95249 * 8 4 3 10 10 C 1.34772 * 120.00222 * 180.02562 * 9 8 4 11 11 O 1.21297 * 120.00135 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00293 * 180.02562 * 10 9 8 13 13 N 1.46906 * 109.47093 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99973 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.46808 * 325.00209 * 14 13 12 16 16 C 1.53000 * 109.47120 * 84.99803 * 14 13 12 17 17 C 1.50694 * 109.47066 * 204.99831 * 14 13 12 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47221 * 299.99929 * 1 2 3 27 27 H 1.08998 * 109.47399 * 60.00448 * 1 2 3 28 28 H 1.08995 * 109.46825 * 240.00252 * 2 1 3 29 29 H 1.09002 * 109.47096 * 119.99952 * 2 1 3 30 30 H 1.09001 * 109.47102 * 59.99997 * 3 2 1 31 31 H 1.09002 * 109.47183 * 299.99899 * 3 2 1 32 32 H 1.08006 * 125.83621 * 180.02562 * 6 5 4 33 33 H 1.08003 * 126.08439 * 180.25831 * 7 6 5 34 34 H 0.97005 * 120.00488 * 0.02562 * 9 8 4 35 35 H 1.08993 * 109.47230 * 60.00296 * 12 10 9 36 36 H 1.08998 * 109.47345 * 299.99740 * 12 10 9 37 37 H 1.00904 * 110.99866 * 303.94661 * 13 12 10 38 38 H 1.08997 * 109.47359 * 180.02562 * 16 14 13 39 39 H 1.09007 * 109.47356 * 300.00024 * 16 14 13 40 40 H 1.09000 * 109.47156 * 59.99749 * 16 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3296 1.4424 1.1316 6 6 5.5762 1.4430 0.7338 7 6 5.5915 1.4383 -0.6636 8 6 4.3004 1.4427 -1.0945 9 7 3.8750 1.4422 -2.4227 10 6 4.7810 1.4420 -3.4205 11 8 5.9664 1.4419 -3.1634 12 6 4.3214 1.4419 -4.8557 13 7 5.4910 1.4411 -5.7445 14 6 5.0805 1.4404 -7.1550 15 1 4.1705 0.8512 -7.2682 16 6 4.8175 2.8773 -7.6103 17 6 6.1763 0.8393 -7.9968 18 1 7.0869 0.4927 -7.5308 19 6 6.0168 0.7326 -9.3623 20 7 4.9082 1.1550 -9.9298 21 14 7.3755 -0.0120 -10.4058 22 1 6.9604 -0.0128 -11.8317 23 1 8.6150 0.7910 -10.2511 24 1 7.6308 -1.4067 -9.9644 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.4447 1.4427 1.3758 33 1 6.4712 1.4336 -1.2901 34 1 2.9271 1.4419 -2.6285 35 1 3.7214 2.3319 -5.0451 36 1 3.7211 0.5520 -5.0450 37 1 6.0976 2.2223 -5.5446 38 1 4.5125 2.8767 -8.6567 39 1 4.0249 3.3121 -7.0014 40 1 5.7275 3.4666 -7.4970 41 1 4.7962 1.0802 -10.8904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602859703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:56 Heat of formation + Delta-G solvation = 24.178825 kcal Electronic energy + Delta-G solvation = -21525.545355 eV Core-core repulsion = 18248.530848 eV Total energy + Delta-G solvation = -3277.014507 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -42.55631 -40.64395 -37.59936 -36.49376 -35.80365 -34.47673 -32.30569 -31.35716 -29.87355 -27.29666 -27.19615 -26.70016 -23.20678 -23.07347 -22.13841 -21.66675 -20.96944 -19.27052 -18.43206 -17.67027 -17.02551 -16.70872 -16.50803 -16.23920 -15.88968 -15.54479 -15.17453 -14.86537 -14.58696 -14.51371 -14.12643 -13.95522 -13.53719 -13.28325 -13.11055 -12.91556 -12.84466 -12.74070 -12.43194 -12.32025 -12.14613 -12.09749 -11.96514 -11.82608 -11.64232 -11.16064 -10.84394 -10.45872 -9.96992 -9.17595 -8.99732 -8.09152 -6.18666 0.63846 1.07681 1.45677 1.46360 1.54383 1.56614 1.99344 2.04723 2.46435 3.19941 3.52365 3.53883 3.68882 3.84911 4.02642 4.19337 4.31021 4.39560 4.42950 4.47481 4.59736 4.61900 4.77127 4.79482 4.91819 4.92933 5.08440 5.09637 5.10150 5.15286 5.35242 5.39179 5.71822 5.74468 5.82340 5.94218 6.20570 6.29753 6.60955 6.70024 6.76949 6.93269 7.02458 7.50806 8.95917 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.003216 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.036267 B = 8703.630054 C = 9316.780044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.121 3.879 4 N -0.384 5.384 5 N -0.315 5.315 6 C 0.060 3.940 7 C -0.313 4.313 8 C 0.307 3.693 9 N -0.637 5.637 10 C 0.525 3.475 11 O -0.524 6.524 12 C 0.053 3.947 13 N -0.682 5.682 14 C 0.220 3.780 15 H 0.019 0.981 16 C -0.160 4.160 17 C -0.520 4.520 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.955 3.045 22 H -0.282 1.282 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.211 0.789 33 H 0.152 0.848 34 H 0.427 0.573 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.336 0.664 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 1.543 18.872 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.001 3.999 4 N -0.172 5.172 5 N -0.137 5.137 6 C -0.125 4.125 7 C -0.345 4.345 8 C 0.086 3.914 9 N -0.287 5.287 10 C 0.313 3.687 11 O -0.397 6.397 12 C -0.080 4.080 13 N -0.314 5.314 14 C 0.112 3.888 15 H 0.037 0.963 16 C -0.219 4.219 17 C -0.559 4.559 18 H 0.067 0.933 19 C -0.184 4.184 20 N -0.558 5.558 21 Si 0.782 3.218 22 H -0.208 1.208 23 H -0.200 1.200 24 H -0.201 1.201 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.227 0.773 33 H 0.170 0.830 34 H 0.266 0.734 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.850 0.871 19.819 22.611 hybrid contribution 0.583 0.466 -1.637 1.798 sum -10.267 1.336 18.182 20.924 Atomic orbital electron populations 1.21683 0.92367 1.03003 1.03247 1.21896 0.98152 0.95058 1.02385 1.22131 0.72417 0.99221 1.06095 1.48928 1.07036 1.59901 1.01362 1.77357 1.02240 1.27635 1.06512 1.24166 0.95861 0.97843 0.94660 1.21718 0.96175 1.20838 0.95745 1.18127 0.91250 1.00861 0.81139 1.42826 1.11821 1.73018 1.01061 1.21171 0.85577 0.74509 0.87476 1.90650 1.18247 1.46840 1.83939 1.21806 0.94951 1.04367 0.86881 1.60401 1.16101 1.50471 1.04400 1.18974 0.94875 0.92434 0.82560 0.96288 1.22280 0.98219 0.98312 1.03114 1.21424 1.03067 1.39423 0.91971 0.93271 1.25602 0.97852 0.96088 0.98881 1.69963 1.26744 1.48092 1.11021 0.85653 0.79683 0.78988 0.77521 1.20757 1.20046 1.20102 0.91862 0.91489 0.90976 0.92207 0.92432 0.87372 0.87057 0.77262 0.83016 0.73423 0.90129 0.86873 0.84655 0.91663 0.94562 0.95393 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.14 -1.74 6.26 30.59 0.19 -1.55 16 3 C 0.12 1.64 6.25 86.38 0.54 2.18 16 4 N -0.38 -8.61 3.62 -345.00 -1.25 -9.86 16 5 N -0.32 -8.11 12.56 -57.09 -0.72 -8.82 16 6 C 0.06 1.50 12.01 85.21 1.02 2.52 16 7 C -0.31 -9.24 9.65 22.14 0.21 -9.03 16 8 C 0.31 7.99 7.66 131.32 1.01 8.99 16 9 N -0.64 -14.17 5.41 -308.57 -1.67 -15.85 16 10 C 0.53 15.55 7.83 87.66 0.69 16.23 16 11 O -0.52 -19.83 13.33 -3.08 -0.04 -19.87 16 12 C 0.05 1.57 5.97 85.56 0.51 2.08 16 13 N -0.68 -28.07 5.86 -499.46 -2.92 -30.99 16 14 C 0.22 10.51 2.57 44.17 0.11 10.62 16 15 H 0.02 0.97 7.80 -2.39 -0.02 0.96 16 16 C -0.16 -7.18 8.94 71.98 0.64 -6.53 16 17 C -0.52 -28.64 8.84 25.60 0.23 -28.41 16 18 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 19 C 0.01 0.78 5.30 84.66 0.45 1.23 16 20 N -0.92 -51.15 11.32 21.45 0.24 -50.91 16 21 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 0.93 7.50 -2.39 -0.02 0.91 16 32 H 0.21 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.15 5.17 5.83 -2.91 -0.02 5.16 16 34 H 0.43 5.96 7.96 -92.70 -0.74 5.22 16 35 H 0.08 2.03 7.44 -2.39 -0.02 2.01 16 36 H 0.11 3.11 8.05 -2.39 -0.02 3.09 16 37 H 0.34 13.92 8.17 -89.69 -0.73 13.19 16 38 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 39 H 0.04 1.35 7.46 -2.38 -0.02 1.34 16 40 H 0.03 1.22 8.13 -2.39 -0.02 1.21 16 41 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -69.13 341.61 1.56 -67.58 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.43 Total: 25.03 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 6.32 Total: -2.12 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -6.32 Total: -116.42 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.04 Total: -19.87 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.13 1.56 -67.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602859703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.754 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds