Wall clock time and date at job start Tue Mar 31 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 H 1.08994 * 109.47081 * 304.99626 * 3 2 1 5 5 C 1.53005 * 109.46855 * 184.99723 * 3 2 1 6 6 N 1.46492 * 109.47132 * 64.99924 * 3 2 1 7 7 C 1.34778 * 120.00174 * 204.99873 * 6 3 2 8 8 O 1.21289 * 119.99795 * 359.97438 * 7 6 3 9 9 C 1.50694 * 120.00526 * 179.97438 * 7 6 3 10 10 H 1.09007 * 109.47237 * 300.00434 * 9 7 6 11 11 C 1.53000 * 109.46976 * 59.99879 * 9 7 6 12 12 N 1.46499 * 109.47443 * 179.97438 * 9 7 6 13 13 C 1.35309 * 125.87027 * 275.02607 * 12 9 7 14 14 C 1.35353 * 106.17498 * 179.97438 * 13 12 9 15 15 C 1.50706 * 126.75076 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46793 * 124.99895 * 15 14 13 17 17 H 1.08001 * 119.99975 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99507 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00130 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99689 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47075 * 60.00023 * 20 18 16 22 22 H 1.48503 * 109.47182 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47160 * 300.00116 * 20 18 16 24 24 N 1.33775 * 106.49785 * 359.97438 * 14 13 12 25 25 N 1.28637 * 108.88137 * 0.02562 * 24 14 13 26 26 H 1.09001 * 109.46965 * 60.00687 * 1 2 3 27 27 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47231 * 300.00250 * 1 2 3 29 29 H 1.09004 * 109.47557 * 239.99640 * 2 1 3 30 30 H 1.09003 * 109.47174 * 120.00243 * 2 1 3 31 31 H 1.09005 * 109.47391 * 60.00362 * 5 3 2 32 32 H 1.09001 * 109.46998 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.47197 * 299.99832 * 5 3 2 34 34 H 0.97001 * 120.00406 * 25.00265 * 6 3 2 35 35 H 1.08998 * 109.47412 * 300.00089 * 11 9 7 36 36 H 1.09003 * 109.47058 * 60.00536 * 11 9 7 37 37 H 1.09007 * 109.47151 * 180.02562 * 11 9 7 38 38 H 1.08002 * 126.91290 * 359.97438 * 13 12 9 39 39 H 1.08997 * 109.46870 * 244.99788 * 15 14 13 40 40 H 1.09004 * 109.46999 * 5.00398 * 15 14 13 41 41 H 0.97003 * 119.99723 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6524 2.0974 1.2517 7 6 1.5256 3.4384 1.2995 8 8 1.7328 4.1029 0.3063 9 6 1.1264 4.1121 2.5870 10 1 0.1500 3.7439 2.9023 11 6 2.1626 3.8001 3.6685 12 7 1.0588 5.5608 2.3796 13 6 2.0997 6.4219 2.4551 14 6 1.5928 7.6499 2.1960 15 6 2.3534 8.9505 2.1611 16 6 2.1283 9.6286 0.8342 17 1 1.4972 9.1644 0.0907 18 6 2.7280 10.8415 0.5694 19 7 3.4968 11.4064 1.4746 20 14 2.4484 11.6824 -1.0750 21 1 0.9990 11.9524 -1.2528 22 1 3.1980 12.9639 -1.1095 23 1 2.9255 10.7997 -2.1698 24 7 0.2838 7.4820 1.9769 25 7 -0.0009 6.2330 2.0933 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8533 0.9569 -1.0571 32 1 3.9282 2.4719 -0.1261 33 1 3.9994 0.9053 0.7161 34 1 1.4871 1.5661 2.0463 35 1 2.2133 2.7223 3.8230 36 1 3.1389 4.1684 3.3533 37 1 1.8736 4.2871 4.6000 38 1 3.1282 6.1785 2.6774 39 1 2.0024 9.5983 2.9644 40 1 3.4173 8.7528 2.2922 41 1 3.9184 12.2600 1.2884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603190056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:41 Heat of formation + Delta-G solvation = 47.911232 kcal Electronic energy + Delta-G solvation = -21942.436796 eV Core-core repulsion = 18666.451403 eV Total energy + Delta-G solvation = -3275.985393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.53908 -40.16636 -36.89628 -35.20718 -33.36459 -32.66223 -31.17927 -30.48401 -29.71468 -27.52502 -25.31415 -24.17715 -23.29131 -22.36631 -21.03841 -20.45123 -20.07029 -17.83219 -17.14553 -16.17908 -16.09582 -15.55937 -15.13293 -14.46492 -14.44870 -14.25697 -14.10455 -13.85237 -13.70720 -13.17203 -12.91497 -12.65378 -12.56162 -12.17745 -12.10738 -11.92468 -11.70139 -11.64143 -11.50691 -11.08944 -10.93013 -10.64187 -10.60252 -10.21607 -10.01072 -9.61311 -9.42685 -9.33785 -9.19668 -8.34817 -8.02877 -5.91169 -3.90822 2.08998 2.31335 2.60188 3.02633 3.45929 3.47149 3.51287 3.61556 4.16936 4.28311 4.40126 4.50561 4.59418 4.60472 4.65514 4.98280 5.05875 5.16295 5.20594 5.22280 5.30051 5.38048 5.45761 5.50535 5.53685 5.59278 5.72040 5.82451 5.90311 5.94101 6.17274 6.18004 6.37108 7.03942 7.21564 7.25919 7.60471 7.70359 7.91513 8.07338 8.46392 9.12638 9.38156 9.71502 11.20058 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.003749 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.986314 B = 7467.128398 C = 7944.526335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.140 3.860 4 H 0.089 0.911 5 C -0.165 4.165 6 N -0.722 5.722 7 C 0.503 3.497 8 O -0.504 6.504 9 C 0.132 3.868 10 H 0.132 0.868 11 C -0.159 4.159 12 N -0.290 5.290 13 C -0.067 4.067 14 C 0.035 3.965 15 C 0.094 3.906 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.900 5.900 20 Si 0.896 3.104 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.278 1.278 24 N -0.255 5.255 25 N -0.105 5.105 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.399 0.601 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.177 0.823 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 -27.303 4.006 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.108 0.892 5 C -0.223 4.223 6 N -0.376 5.376 7 C 0.285 3.715 8 O -0.377 6.377 9 C 0.025 3.975 10 H 0.149 0.851 11 C -0.218 4.218 12 N -0.086 5.086 13 C -0.215 4.215 14 C -0.101 4.101 15 C 0.055 3.945 16 C -0.540 4.540 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.203 1.203 24 N -0.123 5.123 25 N -0.083 5.083 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.234 0.766 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.194 0.806 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.968 -26.709 3.014 26.951 hybrid contribution 1.030 0.040 -0.369 1.095 sum -0.938 -26.670 2.645 26.817 Atomic orbital electron populations 1.21791 0.95204 1.01745 1.02474 1.21835 0.96639 0.95182 1.03124 1.21047 0.95145 0.92990 0.87218 0.89244 1.22189 0.95096 1.03008 1.02034 1.45975 1.71479 1.06264 1.13910 1.20632 0.77870 0.82745 0.90213 1.90863 1.47462 1.63679 1.35684 1.21239 1.03928 0.77714 0.94651 0.85059 1.22144 0.98644 1.03329 0.97658 1.46638 1.07333 1.06635 1.47964 1.23148 0.95186 0.90160 1.13018 1.22967 0.90675 0.97346 0.99135 1.17713 0.93298 0.85069 0.98423 1.21032 1.28806 1.04327 0.99816 0.92304 1.24956 0.95234 0.97102 0.97102 1.69938 1.32109 1.17845 1.34135 0.86577 0.78427 0.78464 0.84115 1.20092 1.21354 1.20320 1.75040 1.15332 1.05558 1.16361 1.78183 1.11132 1.00120 1.18878 0.92432 0.92481 0.92529 0.90263 0.91340 0.91531 0.91780 0.92404 0.76640 0.89586 0.90361 0.89730 0.80551 0.94328 0.94623 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.80 37.16 0.36 -0.52 16 2 C -0.13 -0.68 5.47 -26.73 -0.15 -0.82 16 3 C 0.14 1.13 2.57 -67.93 -0.17 0.95 16 4 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 5 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 6 N -0.72 -5.69 4.42 -53.81 -0.24 -5.93 16 7 C 0.50 6.31 7.19 -10.99 -0.08 6.24 16 8 O -0.50 -9.38 16.08 5.55 0.09 -9.29 16 9 C 0.13 1.52 3.65 -69.09 -0.25 1.26 16 10 H 0.13 1.18 8.14 -51.92 -0.42 0.75 16 11 C -0.16 -1.17 8.73 37.16 0.32 -0.85 16 12 N -0.29 -5.20 2.75 -55.89 -0.15 -5.35 16 13 C -0.07 -1.32 10.59 -17.05 -0.18 -1.50 16 14 C 0.04 0.86 6.44 -82.77 -0.53 0.33 16 15 C 0.09 2.56 5.55 -29.03 -0.16 2.40 16 16 C -0.50 -15.20 9.09 -34.44 -0.31 -15.51 16 17 H 0.06 1.84 7.74 -52.49 -0.41 1.44 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 20 Si 0.90 23.04 29.54 -169.99 -5.02 18.02 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 N -0.26 -6.48 12.40 33.29 0.41 -6.06 16 25 N -0.11 -2.30 13.16 60.35 0.79 -1.51 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.33 7.75 -51.93 -0.40 -0.08 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.72 8.02 -40.82 -0.33 1.39 16 35 H 0.09 0.31 7.56 -51.93 -0.39 -0.08 16 36 H 0.08 0.65 7.17 -51.93 -0.37 0.28 16 37 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 38 H 0.18 2.87 7.30 -52.49 -0.38 2.48 16 39 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -38.39 347.96 -5.49 -43.88 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -6.46 Total: -4.86 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.90 Total: -7.40 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 1.55 Total: -45.60 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.39 -5.49 -43.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603190056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.795 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds