Wall clock time and date at job start Tue Mar 31 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 H 1.08994 * 109.47081 * 304.99626 * 3 2 1 5 5 C 1.53005 * 109.46855 * 184.99723 * 3 2 1 6 6 N 1.46492 * 109.47132 * 64.99924 * 3 2 1 7 7 C 1.34778 * 120.00174 * 204.99873 * 6 3 2 8 8 O 1.21289 * 119.99795 * 359.97438 * 7 6 3 9 9 C 1.50694 * 120.00526 * 179.97438 * 7 6 3 10 10 H 1.09007 * 109.47237 * 300.00434 * 9 7 6 11 11 C 1.53000 * 109.46976 * 59.99879 * 9 7 6 12 12 N 1.46499 * 109.47443 * 179.97438 * 9 7 6 13 13 C 1.35309 * 125.87027 * 275.02607 * 12 9 7 14 14 C 1.35353 * 106.17498 * 179.97438 * 13 12 9 15 15 C 1.50706 * 126.75076 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46793 * 124.99895 * 15 14 13 17 17 H 1.08001 * 119.99975 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99507 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00130 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99689 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47075 * 60.00023 * 20 18 16 22 22 H 1.48503 * 109.47182 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47160 * 300.00116 * 20 18 16 24 24 N 1.33775 * 106.49785 * 359.97438 * 14 13 12 25 25 N 1.28637 * 108.88137 * 0.02562 * 24 14 13 26 26 H 1.09001 * 109.46965 * 60.00687 * 1 2 3 27 27 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47231 * 300.00250 * 1 2 3 29 29 H 1.09004 * 109.47557 * 239.99640 * 2 1 3 30 30 H 1.09003 * 109.47174 * 120.00243 * 2 1 3 31 31 H 1.09005 * 109.47391 * 60.00362 * 5 3 2 32 32 H 1.09001 * 109.46998 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.47197 * 299.99832 * 5 3 2 34 34 H 0.97001 * 120.00406 * 25.00265 * 6 3 2 35 35 H 1.08998 * 109.47412 * 300.00089 * 11 9 7 36 36 H 1.09003 * 109.47058 * 60.00536 * 11 9 7 37 37 H 1.09007 * 109.47151 * 180.02562 * 11 9 7 38 38 H 1.08002 * 126.91290 * 359.97438 * 13 12 9 39 39 H 1.08997 * 109.46870 * 244.99788 * 15 14 13 40 40 H 1.09004 * 109.46999 * 5.00398 * 15 14 13 41 41 H 0.97003 * 119.99723 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6524 2.0974 1.2517 7 6 1.5256 3.4384 1.2995 8 8 1.7328 4.1029 0.3063 9 6 1.1264 4.1121 2.5870 10 1 0.1500 3.7439 2.9023 11 6 2.1626 3.8001 3.6685 12 7 1.0588 5.5608 2.3796 13 6 2.0997 6.4219 2.4551 14 6 1.5928 7.6499 2.1960 15 6 2.3534 8.9505 2.1611 16 6 2.1283 9.6286 0.8342 17 1 1.4972 9.1644 0.0907 18 6 2.7280 10.8415 0.5694 19 7 3.4968 11.4064 1.4746 20 14 2.4484 11.6824 -1.0750 21 1 0.9990 11.9524 -1.2528 22 1 3.1980 12.9639 -1.1095 23 1 2.9255 10.7997 -2.1698 24 7 0.2838 7.4820 1.9769 25 7 -0.0009 6.2330 2.0933 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8533 0.9569 -1.0571 32 1 3.9282 2.4719 -0.1261 33 1 3.9994 0.9053 0.7161 34 1 1.4871 1.5661 2.0463 35 1 2.2133 2.7223 3.8230 36 1 3.1389 4.1684 3.3533 37 1 1.8736 4.2871 4.6000 38 1 3.1282 6.1785 2.6774 39 1 2.0024 9.5983 2.9644 40 1 3.4173 8.7528 2.2922 41 1 3.9184 12.2600 1.2884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603190056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:27 Heat of formation + Delta-G solvation = 19.351386 kcal Electronic energy + Delta-G solvation = -21943.675244 eV Core-core repulsion = 18666.451403 eV Total energy + Delta-G solvation = -3277.223841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 7.72 seconds Orbital eigenvalues (eV) -44.14940 -41.16553 -37.69999 -36.49391 -35.40694 -33.63470 -32.98947 -31.53191 -30.50946 -29.51478 -26.29390 -25.40729 -24.86212 -23.46584 -22.19619 -21.76041 -21.29942 -18.94820 -18.41143 -18.25163 -17.13825 -16.63544 -16.57805 -16.39818 -15.70428 -15.09153 -14.88544 -14.77508 -14.52550 -14.35570 -14.29861 -13.91384 -13.73101 -13.47048 -13.27989 -13.03156 -12.74010 -12.68341 -12.63220 -12.49640 -12.30254 -11.99315 -11.90369 -11.72191 -11.65925 -11.55940 -11.32250 -10.70409 -10.60020 -10.24620 -9.86636 -8.20514 -6.28917 0.62318 1.33359 1.36028 1.37453 1.41436 1.49388 1.75211 2.06922 2.43213 3.11693 3.35592 3.46308 3.67894 3.71097 3.77875 4.05270 4.16648 4.21969 4.39939 4.47262 4.56549 4.58818 4.60751 4.73368 4.74493 4.82459 4.97491 5.07255 5.11307 5.14156 5.25939 5.26554 5.40535 5.41278 5.46080 5.52860 5.72996 5.74759 6.21321 6.38290 6.78073 7.07632 7.37156 7.66774 8.90335 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.003749 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.986314 B = 7467.128398 C = 7944.526335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C 0.137 3.863 4 H 0.053 0.947 5 C -0.160 4.160 6 N -0.693 5.693 7 C 0.504 3.496 8 O -0.575 6.575 9 C 0.119 3.881 10 H 0.163 0.837 11 C -0.155 4.155 12 N -0.271 5.271 13 C -0.040 4.040 14 C -0.007 4.007 15 C 0.105 3.895 16 C -0.528 4.528 17 H 0.038 0.962 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.960 3.040 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.273 1.273 24 N -0.304 5.304 25 N -0.116 5.116 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.422 0.578 35 H 0.135 0.865 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.213 0.787 39 H 0.013 0.987 40 H 0.032 0.968 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 -30.487 4.837 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C 0.033 3.967 4 H 0.071 0.929 5 C -0.219 4.219 6 N -0.348 5.348 7 C 0.288 3.712 8 O -0.453 6.453 9 C 0.014 3.986 10 H 0.180 0.820 11 C -0.213 4.213 12 N -0.067 5.067 13 C -0.190 4.190 14 C -0.145 4.145 15 C 0.066 3.934 16 C -0.566 4.566 17 H 0.056 0.944 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.785 3.215 21 H -0.200 1.200 22 H -0.194 1.194 23 H -0.198 1.198 24 N -0.170 5.170 25 N -0.094 5.094 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.261 0.739 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.230 0.770 39 H 0.031 0.969 40 H 0.050 0.950 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.353 -29.986 3.891 30.268 hybrid contribution 0.836 0.825 -0.592 1.315 sum -0.517 -29.161 3.300 29.352 Atomic orbital electron populations 1.21817 0.95676 1.02411 1.01550 1.21793 0.96057 0.92894 1.04928 1.21113 0.95335 0.94357 0.85916 0.92851 1.22147 0.94718 1.01244 1.03749 1.45776 1.69217 1.04796 1.14966 1.20810 0.77050 0.83855 0.89482 1.90855 1.51073 1.65402 1.37983 1.21998 1.07294 0.73747 0.95527 0.81954 1.22282 0.96515 1.06603 0.95863 1.47072 1.05750 1.08963 1.44896 1.23435 0.96710 0.88833 1.10039 1.22651 0.91071 0.97983 1.02745 1.17368 0.93320 0.86336 0.96335 1.21236 1.29178 1.05393 1.00815 0.94355 1.25758 0.94696 0.97475 1.00821 1.70020 1.32345 1.18286 1.35789 0.85582 0.78416 0.77925 0.79588 1.20009 1.19450 1.19836 1.74937 1.16212 1.07562 1.18337 1.78013 1.12502 0.99376 1.19507 0.94492 0.91013 0.92404 0.89384 0.88566 0.90531 0.95245 0.89915 0.73910 0.84722 0.91026 0.89042 0.77021 0.96879 0.94965 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.80 71.98 0.71 -0.73 16 2 C -0.12 -0.86 5.47 30.59 0.17 -0.69 16 3 C 0.14 1.98 2.57 44.99 0.12 2.10 16 4 H 0.05 1.20 7.58 -2.39 -0.02 1.18 16 5 C -0.16 -2.27 9.48 71.98 0.68 -1.59 16 6 N -0.69 -9.05 4.42 -442.55 -1.96 -11.01 16 7 C 0.50 11.94 7.19 87.65 0.63 12.57 16 8 O -0.58 -21.81 16.08 -3.06 -0.05 -21.86 16 9 C 0.12 2.42 3.65 44.24 0.16 2.58 16 10 H 0.16 2.32 8.14 -2.38 -0.02 2.30 16 11 C -0.15 -1.63 8.73 71.98 0.63 -1.00 16 12 N -0.27 -9.53 2.75 -330.74 -0.91 -10.44 16 13 C -0.04 -1.58 10.59 83.49 0.88 -0.70 16 14 C -0.01 -0.35 6.44 41.60 0.27 -0.08 16 15 C 0.11 6.03 5.55 29.10 0.16 6.19 16 16 C -0.53 -33.30 9.09 25.60 0.23 -33.07 16 17 H 0.04 2.52 7.74 -2.91 -0.02 2.49 16 18 C 0.01 0.66 5.46 84.66 0.46 1.13 16 19 N -0.92 -57.29 13.29 21.45 0.28 -57.00 16 20 Si 0.96 48.00 29.54 68.60 2.03 50.02 16 21 H -0.27 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 24 N -0.30 -16.03 12.40 -48.59 -0.60 -16.63 16 25 N -0.12 -5.15 13.16 37.02 0.49 -4.66 16 26 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.50 7.75 -2.39 -0.02 0.48 16 29 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.42 1.64 8.02 -92.71 -0.74 0.89 16 35 H 0.13 0.14 7.56 -2.39 -0.02 0.12 16 36 H 0.07 0.92 7.17 -2.39 -0.02 0.90 16 37 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.21 6.56 7.30 -2.91 -0.02 6.53 16 39 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.03 1.81 8.12 -2.39 -0.02 1.79 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -90.04 347.96 4.66 -85.38 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 0.28 Total: -0.52 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.10 Total: -13.28 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -2.70 Total: -99.74 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.02 kcal Total: -90.04 4.66 -85.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603190056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.732 kcal (2) G-P(sol) polarization free energy of solvation -90.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.72 seconds