Wall clock time and date at job start Tue Mar 31 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47283 * 2 1 4 4 H 1.09001 * 109.46751 * 55.00473 * 3 2 1 5 5 C 1.52997 * 109.47284 * 175.00170 * 3 2 1 6 6 N 1.46499 * 109.47481 * 295.00693 * 3 2 1 7 7 C 1.34777 * 120.00199 * 154.99940 * 6 3 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 3 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 3 10 10 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 11 11 C 1.52996 * 109.46842 * 299.72137 * 9 7 6 12 12 N 1.46491 * 109.46957 * 179.72354 * 9 7 6 13 13 C 1.35313 * 125.87104 * 84.99740 * 12 9 7 14 14 C 1.35356 * 106.17750 * 179.97438 * 13 12 9 15 15 C 1.50700 * 126.75165 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.47002 * 124.99871 * 15 14 13 17 17 H 1.08004 * 119.99578 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99712 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00297 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99872 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46732 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46943 * 120.00381 * 20 18 16 23 23 H 1.48498 * 109.47358 * 240.00508 * 20 18 16 24 24 N 1.33774 * 106.49533 * 0.02562 * 14 13 12 25 25 N 1.28637 * 108.88403 * 359.73160 * 24 14 13 26 26 H 1.08997 * 109.47141 * 299.99510 * 1 2 3 27 27 H 1.08998 * 109.47192 * 59.99829 * 1 2 3 28 28 H 1.08996 * 109.46988 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46883 * 240.00445 * 2 1 3 30 30 H 1.08995 * 109.47704 * 120.00699 * 2 1 3 31 31 H 1.08993 * 109.47268 * 60.00476 * 5 3 2 32 32 H 1.09006 * 109.47495 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.47320 * 300.00586 * 5 3 2 34 34 H 0.97000 * 119.99484 * 334.99037 * 6 3 2 35 35 H 1.09003 * 109.46851 * 180.02562 * 11 9 7 36 36 H 1.09002 * 109.47575 * 299.99754 * 11 9 7 37 37 H 1.09001 * 109.47551 * 59.99933 * 11 9 7 38 38 H 1.08001 * 126.91439 * 359.97438 * 13 12 9 39 39 H 1.08998 * 109.47154 * 245.00211 * 15 14 13 40 40 H 1.08998 * 109.47036 * 4.99925 * 15 14 13 41 41 H 0.97006 * 119.99936 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0976 -1.2517 7 6 1.5256 3.4385 -1.2994 8 8 1.7320 4.1028 -0.3059 9 6 1.1208 4.1119 -2.5854 10 1 0.1453 3.7401 -2.8987 11 6 2.1559 3.8049 -3.6694 12 7 1.0474 5.5599 -2.3763 13 6 2.0844 6.4257 -2.4534 14 6 1.5725 7.6514 -2.1929 15 6 2.3274 8.9553 -2.1590 16 6 1.6773 9.9367 -3.0998 17 1 0.8045 9.6455 -3.6654 18 6 2.1961 11.2066 -3.2377 19 7 3.2586 11.5613 -2.5486 20 14 1.3907 12.4231 -4.4045 21 1 0.2200 11.7828 -5.0563 22 1 0.9415 13.6162 -3.6430 23 1 2.3698 12.8372 -5.4412 24 7 0.2647 7.4776 -1.9715 25 7 -0.0156 6.2281 -2.0928 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.9994 0.9054 -0.7161 32 1 3.9282 2.4720 0.1261 33 1 3.8533 0.9569 1.0570 34 1 1.4871 1.5662 -2.0462 35 1 1.8633 4.2923 -4.5995 36 1 3.1315 4.1767 -3.3561 37 1 2.2106 2.7275 -3.8250 38 1 3.1135 6.1869 -2.6777 39 1 2.3119 9.3578 -1.1462 40 1 3.3592 8.7858 -2.4668 41 1 3.6238 12.4547 -2.6460 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603190058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:01 Heat of formation + Delta-G solvation = 47.317289 kcal Electronic energy + Delta-G solvation = -21842.884460 eV Core-core repulsion = 18566.873312 eV Total energy + Delta-G solvation = -3276.011148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 7.25 seconds Orbital eigenvalues (eV) -42.53803 -40.19651 -36.92465 -35.21550 -33.38142 -32.68604 -31.18751 -30.49845 -29.72934 -27.53298 -25.32488 -24.20065 -23.30409 -22.37961 -21.06431 -20.45734 -20.08240 -17.83585 -17.17458 -16.28358 -16.03574 -15.57416 -15.16828 -14.48598 -14.44468 -14.28491 -14.05508 -13.90427 -13.75059 -13.20333 -12.90808 -12.65301 -12.58960 -12.19598 -12.17921 -11.90834 -11.73285 -11.60576 -11.52706 -11.12108 -10.94940 -10.67024 -10.62491 -10.28328 -9.97455 -9.63597 -9.46111 -9.33796 -9.20084 -8.37314 -8.03290 -5.93300 -3.93599 2.09688 2.27821 2.57208 3.02684 3.38883 3.45619 3.51448 3.61256 4.15161 4.27156 4.38676 4.51014 4.56230 4.57874 4.63046 4.99059 5.03063 5.14173 5.19598 5.20721 5.30851 5.34946 5.43697 5.48017 5.51434 5.61641 5.69083 5.79899 5.89901 5.90875 6.13871 6.18032 6.37155 7.01642 7.21467 7.25280 7.61299 7.70896 7.87446 8.04687 8.43972 9.10180 9.38270 9.68849 11.17917 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038719 B = 0.003252 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.988595 B = 8608.748087 C = 8792.714540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.140 3.860 4 H 0.089 0.911 5 C -0.165 4.165 6 N -0.722 5.722 7 C 0.505 3.495 8 O -0.508 6.508 9 C 0.132 3.868 10 H 0.132 0.868 11 C -0.160 4.160 12 N -0.290 5.290 13 C -0.067 4.067 14 C 0.036 3.964 15 C 0.092 3.908 16 C -0.501 4.501 17 H 0.060 0.940 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 N -0.255 5.255 25 N -0.105 5.105 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.177 0.823 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -27.916 0.177 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.107 0.893 5 C -0.223 4.223 6 N -0.376 5.376 7 C 0.288 3.712 8 O -0.381 6.381 9 C 0.025 3.975 10 H 0.150 0.850 11 C -0.218 4.218 12 N -0.086 5.086 13 C -0.215 4.215 14 C -0.101 4.101 15 C 0.053 3.947 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 N -0.123 5.123 25 N -0.083 5.083 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.195 0.805 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.092 -27.346 1.229 27.396 hybrid contribution 0.754 0.284 -1.187 1.434 sum -0.338 -27.062 0.042 27.064 Atomic orbital electron populations 1.21791 0.95185 1.01777 1.02471 1.21836 0.96658 0.95164 1.03148 1.21048 0.95130 0.93017 0.87195 0.89256 1.22189 0.95104 1.02963 1.02069 1.45982 1.71380 1.06275 1.13941 1.20625 0.77711 0.82720 0.90153 1.90830 1.47826 1.63758 1.35704 1.21234 1.03951 0.77753 0.94596 0.85042 1.22150 0.98616 1.03322 0.97748 1.46627 1.07297 1.06602 1.48032 1.23145 0.95359 0.90030 1.12968 1.22952 0.90669 0.96974 0.99484 1.17727 0.93563 0.84807 0.98565 1.21100 1.12699 0.96509 1.23639 0.92206 1.24979 0.95112 0.98182 0.96227 1.69964 1.22563 1.19761 1.41550 0.86465 0.79364 0.81110 0.80687 1.19703 1.20980 1.21150 1.75040 1.15203 1.05323 1.16725 1.78189 1.10908 1.00273 1.18949 0.92435 0.92520 0.92461 0.91319 0.90253 0.92375 0.91820 0.91525 0.76578 0.89627 0.90376 0.89597 0.80548 0.94273 0.94589 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.80 37.16 0.36 -0.48 16 2 C -0.13 -0.63 5.47 -26.73 -0.15 -0.78 16 3 C 0.14 1.06 2.57 -67.93 -0.17 0.88 16 4 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 5 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 6 N -0.72 -5.43 4.43 -53.81 -0.24 -5.67 16 7 C 0.50 6.11 7.19 -10.98 -0.08 6.03 16 8 O -0.51 -8.98 16.08 5.55 0.09 -8.89 16 9 C 0.13 1.52 3.65 -69.09 -0.25 1.26 16 10 H 0.13 1.20 8.14 -51.93 -0.42 0.77 16 11 C -0.16 -1.23 8.73 37.16 0.32 -0.90 16 12 N -0.29 -5.20 2.75 -55.90 -0.15 -5.36 16 13 C -0.07 -1.32 10.59 -17.04 -0.18 -1.50 16 14 C 0.04 0.87 6.44 -82.77 -0.53 0.34 16 15 C 0.09 2.52 5.55 -29.03 -0.16 2.36 16 16 C -0.50 -14.83 9.09 -34.44 -0.31 -15.14 16 17 H 0.06 1.80 7.74 -52.48 -0.41 1.40 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 20 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 N -0.26 -6.48 12.40 33.29 0.41 -6.07 16 25 N -0.11 -2.31 13.16 60.35 0.79 -1.51 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.31 7.75 -51.93 -0.40 -0.09 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.40 1.65 8.03 -40.82 -0.33 1.32 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.66 7.17 -51.93 -0.37 0.29 16 37 H 0.09 0.33 7.57 -51.93 -0.39 -0.07 16 38 H 0.18 2.87 7.30 -52.49 -0.38 2.48 16 39 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -37.78 347.99 -5.50 -43.28 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -6.46 Total: -4.71 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.90 Total: -7.26 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 1.55 Total: -45.13 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.78 -5.50 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603190058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.597 kcal (2) G-P(sol) polarization free energy of solvation -37.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.26 seconds