Wall clock time and date at job start Tue Mar 31 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 C 1.52996 * 109.47135 * 294.49750 * 3 2 1 5 5 C 1.53003 * 109.47095 * 294.68561 * 4 3 2 6 6 C 1.53001 * 109.46773 * 54.49561 * 3 2 1 7 7 N 1.46500 * 109.47031 * 65.00318 * 6 3 2 8 8 C 1.35312 * 125.86434 * 125.32515 * 7 6 3 9 9 C 1.35356 * 106.17208 * 180.11516 * 8 7 6 10 10 C 1.50697 * 126.75310 * 179.85337 * 9 8 7 11 11 N 1.46501 * 109.47456 * 94.71133 * 10 9 8 12 12 C 1.34775 * 120.00072 * 179.72405 * 11 10 9 13 13 O 1.21683 * 120.00295 * 0.27303 * 12 11 10 14 14 C 1.46383 * 119.99583 * 180.27305 * 12 11 10 15 15 H 1.07997 * 120.00157 * 0.02562 * 14 12 11 16 16 C 1.40050 * 119.99301 * 179.97438 * 14 12 11 17 17 N 1.30669 * 120.00436 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99532 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47343 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47084 * 120.00120 * 18 16 14 21 21 H 1.48503 * 109.47140 * 240.00305 * 18 16 14 22 22 N 1.33781 * 106.49408 * 359.59087 * 9 8 7 23 23 N 1.28630 * 108.88251 * 0.26139 * 22 9 8 24 24 H 1.08993 * 109.47560 * 174.18533 * 1 2 3 25 25 H 1.09004 * 109.47253 * 294.18262 * 1 2 3 26 26 H 1.09006 * 109.47197 * 54.17787 * 1 2 3 27 27 H 1.09001 * 109.46657 * 239.99775 * 2 1 3 28 28 H 1.08996 * 109.47131 * 120.00211 * 2 1 3 29 29 H 1.08997 * 109.47043 * 174.49912 * 3 2 1 30 30 H 1.09002 * 109.47611 * 54.68349 * 4 3 2 31 31 H 1.09000 * 109.47258 * 174.68726 * 4 3 2 32 32 H 1.09002 * 109.47269 * 305.91843 * 5 4 3 33 33 H 1.08998 * 109.47325 * 65.91939 * 5 4 3 34 34 H 1.08994 * 109.47443 * 185.91707 * 5 4 3 35 35 H 1.08997 * 109.47342 * 304.99835 * 6 3 2 36 36 H 1.09001 * 109.46393 * 185.00083 * 6 3 2 37 37 H 1.07997 * 126.91951 * 359.96906 * 8 7 6 38 38 H 1.08998 * 109.47291 * 334.70666 * 10 9 8 39 39 H 1.09002 * 109.46862 * 214.70926 * 10 9 8 40 40 H 0.97005 * 119.99463 * 359.97438 * 11 10 9 41 41 H 0.96998 * 120.00107 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6461 2.1227 -1.3126 5 6 2.3715 1.4441 -2.4764 6 6 1.4202 2.2025 1.1743 7 7 1.8932 1.6242 2.4345 8 6 2.4973 2.2997 3.4393 9 6 2.7663 1.3851 4.4002 10 6 3.4399 1.6394 5.7240 11 7 2.4228 1.8570 6.7557 12 6 2.7949 2.0993 8.0282 13 8 3.9756 2.1421 8.3193 14 6 1.7785 2.3108 9.0602 15 1 0.7305 2.2724 8.8019 16 6 2.1651 2.5620 10.3826 17 7 3.4330 2.6080 10.6952 18 14 0.8681 2.8312 11.6997 19 1 -0.4831 2.7286 11.0922 20 1 1.0146 1.7989 12.7570 21 1 1.0416 4.1798 12.2969 22 7 2.3112 0.2119 3.9458 23 7 1.7997 0.3876 2.7787 24 1 -0.3634 -1.0223 -0.1041 25 1 -0.3634 0.4210 0.9375 26 1 -0.3634 0.6015 -0.8333 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.1255 1.4440 0.0985 30 1 0.5690 2.0380 -1.4569 31 1 1.9259 3.1755 -1.2745 32 1 3.4438 1.4360 -2.2810 33 1 2.0133 0.4199 -2.5801 34 1 2.1741 1.9929 -3.3972 35 1 0.3341 2.1256 1.1242 36 1 1.7129 3.2513 1.1233 37 1 2.7220 3.3556 3.4680 38 1 4.0730 2.5232 5.6456 39 1 4.0509 0.7774 5.9922 40 1 1.4816 1.8232 6.5235 41 1 3.7008 2.7823 11.6110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603198063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:49 Heat of formation + Delta-G solvation = 16.917417 kcal Electronic energy + Delta-G solvation = -21440.738728 eV Core-core repulsion = 18163.409342 eV Total energy + Delta-G solvation = -3277.329386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.29860 -39.40295 -38.89909 -35.79575 -34.75195 -34.36606 -32.35191 -31.93747 -29.79636 -28.90798 -26.79009 -26.09936 -24.36816 -22.85330 -22.34325 -21.63076 -20.17996 -19.33234 -18.10202 -17.55577 -17.29255 -16.56311 -16.32165 -15.99555 -15.89135 -15.72225 -15.15546 -14.66524 -14.50281 -14.14617 -14.01432 -13.70430 -13.41510 -13.18704 -13.10079 -12.87739 -12.74716 -12.63556 -12.53008 -12.39302 -12.09731 -11.96826 -11.81940 -11.77155 -11.33543 -11.24567 -10.93113 -10.85534 -10.37324 -9.79260 -9.49697 -8.27813 -6.84236 0.62156 1.35505 1.41721 1.42951 1.46362 1.60147 2.27462 2.48242 3.18644 3.37921 3.49405 3.63370 3.69453 3.87817 3.94950 4.10627 4.19905 4.27189 4.36360 4.48618 4.54051 4.56653 4.64844 4.72595 4.84555 4.90290 4.97569 4.99486 5.06304 5.12975 5.29196 5.33073 5.33684 5.36836 5.42909 5.56226 5.78125 5.87891 6.17316 6.26946 6.88063 7.50631 7.52202 8.48958 8.68261 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040551 B = 0.002840 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.323862 B = 9857.127860 C =10065.792169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.093 4.093 4 C -0.112 4.112 5 C -0.154 4.154 6 C 0.102 3.898 7 N -0.278 5.278 8 C -0.015 4.015 9 C -0.047 4.047 10 C 0.225 3.775 11 N -0.748 5.748 12 C 0.541 3.459 13 O -0.630 6.630 14 C -0.571 4.571 15 H 0.084 0.916 16 C 0.028 3.972 17 N -0.821 5.821 18 Si 0.999 3.001 19 H -0.249 1.249 20 H -0.270 1.270 21 H -0.265 1.265 22 N -0.303 5.303 23 N -0.091 5.091 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.229 0.771 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.391 0.609 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 3.188 -26.265 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.211 4.211 6 C -0.016 4.016 7 N -0.072 5.072 8 C -0.167 4.167 9 C -0.185 4.185 10 C 0.098 3.902 11 N -0.403 5.403 12 C 0.345 3.655 13 O -0.517 6.517 14 C -0.608 4.608 15 H 0.103 0.897 16 C -0.187 4.187 17 N -0.450 5.450 18 Si 0.819 3.181 19 H -0.172 1.172 20 H -0.195 1.195 21 H -0.190 1.190 22 N -0.170 5.170 23 N -0.071 5.071 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.158 0.842 37 H 0.246 0.754 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.224 0.776 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.282 1.832 -26.421 27.467 hybrid contribution -0.081 0.735 0.932 1.189 sum -7.363 2.567 -25.489 26.655 Atomic orbital electron populations 1.21793 0.95220 1.01873 1.01554 1.21722 0.96932 0.96071 1.02231 1.21461 1.00028 0.95642 0.94105 1.21525 1.01747 0.99951 0.91717 1.21800 1.00183 1.00941 0.98223 1.22852 1.02148 0.99574 0.77053 1.47708 1.37537 1.06223 1.15711 1.23870 1.02300 1.01940 0.88617 1.21889 1.07054 0.90623 0.98970 1.18879 0.89956 0.99938 0.81381 1.45832 1.08414 1.78276 1.07779 1.18584 0.89033 0.76282 0.81588 1.90552 1.20884 1.58346 1.81907 1.21416 0.93741 1.52407 0.93204 0.89744 1.26973 0.98172 0.91653 1.01870 1.70185 1.18907 1.35871 1.20046 0.84953 0.78118 0.78560 0.76514 1.17238 1.19460 1.18968 1.75081 1.13093 1.24898 1.03888 1.78156 1.20156 1.00025 1.08730 0.93298 0.93750 0.90693 0.91253 0.92517 0.91520 0.90092 0.90025 0.93280 0.92776 0.91616 0.86757 0.84177 0.75427 0.90944 0.94330 0.77616 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.10 71.98 0.66 -1.43 16 2 C -0.13 -2.11 5.13 30.59 0.16 -1.95 16 3 C -0.09 -1.09 2.36 -10.79 -0.03 -1.12 16 4 C -0.11 -0.76 5.28 30.59 0.16 -0.59 16 5 C -0.15 -1.25 9.53 71.98 0.69 -0.56 16 6 C 0.10 1.19 5.59 86.38 0.48 1.68 16 7 N -0.28 -6.12 3.44 -347.73 -1.20 -7.32 16 8 C -0.02 -0.36 11.50 83.49 0.96 0.60 16 9 C -0.05 -1.59 6.62 41.59 0.28 -1.32 16 10 C 0.22 9.34 6.23 85.63 0.53 9.88 16 11 N -0.75 -35.66 5.54 -471.15 -2.61 -38.27 16 12 C 0.54 32.29 7.75 86.36 0.67 32.95 16 13 O -0.63 -42.97 15.02 -4.29 -0.06 -43.03 16 14 C -0.57 -33.17 9.54 24.83 0.24 -32.93 16 15 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 16 C 0.03 1.61 5.50 85.31 0.47 2.08 16 17 N -0.82 -50.86 11.83 21.84 0.26 -50.60 16 18 Si 1.00 41.61 29.56 68.60 2.03 43.64 16 19 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 22 N -0.30 -11.22 12.41 -48.59 -0.60 -11.82 16 23 N -0.09 -2.76 10.33 37.02 0.38 -2.37 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.04 0.73 6.59 -2.38 -0.02 0.71 16 26 H 0.07 0.71 6.23 -2.38 -0.01 0.70 16 27 H 0.07 1.01 6.46 -2.39 -0.02 1.00 16 28 H 0.06 1.31 5.81 -2.39 -0.01 1.30 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.43 6.24 -2.39 -0.01 0.42 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.49 6.75 -2.39 -0.02 0.48 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.11 1.14 6.18 -2.39 -0.01 1.13 16 36 H 0.14 0.67 8.07 -2.39 -0.02 0.65 16 37 H 0.23 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.39 16.90 8.44 -92.70 -0.78 16.11 16 41 H 0.28 15.34 8.29 -92.71 -0.77 14.57 16 Total: -1.00 -82.67 335.55 3.72 -78.95 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.26 Total: 23.56 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.26 Total: 7.27 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.77 Total: -110.39 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.06 Total: -43.03 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -82.67 3.72 -78.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603198063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.869 kcal (2) G-P(sol) polarization free energy of solvation -82.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds