Wall clock time and date at job start Tue Mar 31 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46769 * 2 1 4 4 C 1.52995 * 109.47350 * 240.00181 * 2 1 3 5 5 C 1.52995 * 109.47251 * 119.99656 * 2 1 3 6 6 N 1.46503 * 109.47270 * 54.26223 * 5 2 1 7 7 C 1.46504 * 119.99747 * 275.81800 * 6 5 2 8 8 C 1.50700 * 109.46782 * 269.99606 * 7 6 5 9 9 H 1.07994 * 120.00112 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00061 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99713 * 0.02562 * 10 8 7 12 12 Si 1.86790 * 120.00256 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47173 * 60.00437 * 12 10 8 14 14 H 1.48502 * 109.47278 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47486 * 300.00333 * 12 10 8 16 16 C 1.34775 * 120.00215 * 95.80926 * 6 5 2 17 17 O 1.21284 * 120.00079 * 185.44064 * 16 6 5 18 18 C 1.50694 * 119.99852 * 5.44708 * 16 6 5 19 19 N 1.46502 * 109.46966 * 174.35889 * 18 16 6 20 20 C 1.34429 * 126.82521 * 124.99898 * 19 18 16 21 21 N 1.30829 * 108.08051 * 179.97438 * 20 19 18 22 22 C 1.33239 * 109.82772 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94860 * 0.26808 * 22 21 20 24 24 H 1.08998 * 109.46747 * 299.99668 * 1 2 3 25 25 H 1.08990 * 109.47009 * 60.00017 * 1 2 3 26 26 H 1.09005 * 109.46546 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47034 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47232 * 300.00204 * 3 2 1 29 29 H 1.09001 * 109.47614 * 60.00280 * 3 2 1 30 30 H 1.09002 * 109.46936 * 304.12089 * 4 2 1 31 31 H 1.09001 * 109.47352 * 64.11274 * 4 2 1 32 32 H 1.08999 * 109.47697 * 184.11904 * 4 2 1 33 33 H 1.09000 * 109.47642 * 294.25913 * 5 2 1 34 34 H 1.09003 * 109.47140 * 174.25653 * 5 2 1 35 35 H 1.09002 * 109.46915 * 29.99213 * 7 6 5 36 36 H 1.08997 * 109.46933 * 149.99752 * 7 6 5 37 37 H 0.97001 * 120.00065 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47747 * 54.35784 * 18 16 6 39 39 H 1.08997 * 109.47204 * 294.35624 * 18 16 6 40 40 H 1.08009 * 125.95810 * 359.97438 * 20 19 18 41 41 H 1.08000 * 125.52797 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2492 6 7 1.4423 -2.0568 1.3204 7 6 0.1134 -2.2339 1.9112 8 6 0.2513 -2.4924 3.3894 9 1 1.2308 -2.5214 3.8435 10 6 -0.8730 -2.6909 4.1624 11 7 -2.0658 -2.6552 3.6096 12 14 -0.7020 -3.0121 5.9946 13 1 -0.0234 -1.8585 6.6381 14 1 -2.0490 -3.1915 6.5935 15 1 0.1023 -4.2420 6.2087 16 6 2.1147 -3.1224 0.8422 17 8 1.5818 -4.2114 0.8105 18 6 3.5288 -2.9609 0.3471 19 7 4.0809 -4.2751 0.0090 20 6 4.6180 -4.6452 -1.1664 21 7 4.9942 -5.8942 -1.0655 22 6 4.7156 -6.3530 0.1539 23 7 4.1505 -5.3999 0.8472 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6177 -1.7253 -1.2869 31 1 1.7382 -0.1666 -2.1377 32 1 3.1276 -0.7856 -1.2131 33 1 1.7631 -0.1514 2.1363 34 1 3.1252 -0.8111 1.1993 35 1 -0.4775 -1.3316 1.7537 36 1 -0.3841 -3.0811 1.4390 37 1 -2.8568 -2.7952 4.1533 38 1 4.1365 -2.5011 1.1266 39 1 3.5332 -2.3261 -0.5389 40 1 4.7209 -4.0205 -2.0414 41 1 4.9190 -7.3521 0.5102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609191511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:30 Heat of formation + Delta-G solvation = 59.019590 kcal Electronic energy + Delta-G solvation = -22984.904476 eV Core-core repulsion = 19709.400778 eV Total energy + Delta-G solvation = -3275.503699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87463 -39.63454 -37.17882 -34.16932 -33.65160 -32.43649 -31.01179 -29.11428 -27.43803 -26.91531 -26.88760 -25.52942 -23.06144 -21.79998 -21.67773 -19.45238 -18.36159 -17.23365 -16.78793 -16.50467 -15.48569 -15.40501 -14.97775 -14.70328 -14.38975 -14.07575 -13.87237 -13.78678 -13.56296 -12.82009 -12.80088 -12.31158 -12.21950 -11.93490 -11.60477 -11.46618 -11.41984 -11.30437 -11.02370 -10.89338 -10.68903 -10.59362 -10.26476 -10.16950 -9.90141 -9.83793 -9.60640 -9.57261 -8.92588 -8.44276 -7.74221 -6.07487 -4.11940 1.81876 2.39267 3.14055 3.15524 3.30127 3.34998 3.39191 3.73710 4.40312 4.41195 4.57501 4.75923 4.83549 4.88784 4.99162 5.04963 5.13570 5.27537 5.39477 5.49180 5.55487 5.59994 5.79384 5.81951 6.01170 6.05216 6.08746 6.15351 6.30305 6.35206 6.44485 6.62039 6.68067 6.85147 7.02337 7.36732 7.45753 7.88335 8.19591 8.23404 8.26098 8.80423 8.95887 9.52915 11.00384 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.006761 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.987760 B = 4140.438268 C = 5879.086405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.147 4.147 5 C 0.116 3.884 6 N -0.589 5.589 7 C 0.241 3.759 8 C -0.529 4.529 9 H 0.056 0.944 10 C 0.063 3.937 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.497 3.503 17 O -0.515 6.515 18 C 0.096 3.904 19 N -0.360 5.360 20 C 0.246 3.754 21 N -0.549 5.549 22 C 0.183 3.817 23 N -0.282 5.282 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.215 0.785 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.716 7.186 -10.077 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.204 4.204 5 C -0.009 4.009 6 N -0.321 5.321 7 C 0.122 3.878 8 C -0.568 4.568 9 H 0.074 0.926 10 C -0.139 4.139 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.281 3.719 17 O -0.389 6.389 18 C -0.030 4.030 19 N -0.151 5.151 20 C -0.051 4.051 21 N -0.277 5.277 22 C -0.120 4.120 23 N -0.109 5.109 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.232 0.768 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 11.072 6.373 -9.518 15.931 hybrid contribution -0.045 0.139 0.967 0.978 sum 11.027 6.512 -8.551 15.399 Atomic orbital electron populations 1.22053 0.93568 1.03337 1.01152 1.21007 0.97263 0.95227 0.95340 1.21810 1.00511 0.95178 1.02031 1.22060 0.99717 1.01018 0.97648 1.21629 0.96479 0.84762 0.98022 1.48144 1.20696 1.04927 1.58297 1.19541 0.76872 0.98635 0.92726 1.21403 0.92926 1.49446 0.93027 0.92597 1.24902 0.95097 0.95093 0.98840 1.69913 0.97617 1.49656 1.36110 0.86581 0.77189 0.78920 0.84887 1.20250 1.21161 1.20174 1.19990 0.86711 0.85469 0.79757 1.90760 1.68346 1.25296 1.54539 1.22128 0.95898 0.80570 1.04361 1.50040 1.44296 1.10603 1.10153 1.25947 0.94741 0.93285 0.91096 1.70469 1.27437 1.08770 1.21015 1.25968 0.97178 1.00258 0.88546 1.78270 1.21141 0.93633 1.17852 0.92065 0.93608 0.90973 0.92854 0.92644 0.92272 0.92440 0.92327 0.92987 0.89599 0.91766 0.93370 0.94037 0.92649 0.87146 0.85517 0.76827 0.76960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 6.98 37.16 0.26 -1.81 16 2 C -0.09 -1.04 0.85 -154.51 -0.13 -1.17 16 3 C -0.14 -1.29 8.47 37.16 0.31 -0.97 16 4 C -0.15 -1.52 6.84 37.16 0.25 -1.27 16 5 C 0.12 1.64 4.58 -4.04 -0.02 1.62 16 6 N -0.59 -11.36 2.00 -175.06 -0.35 -11.71 16 7 C 0.24 5.95 3.93 -5.19 -0.02 5.93 16 8 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 9 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 12 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.50 9.80 6.42 -10.99 -0.07 9.73 16 17 O -0.51 -12.99 15.41 5.55 0.09 -12.90 16 18 C 0.10 1.34 5.39 -5.20 -0.03 1.31 16 19 N -0.36 -5.63 3.37 -63.81 -0.22 -5.85 16 20 C 0.25 3.20 12.63 -90.66 -1.14 2.05 16 21 N -0.55 -8.29 11.19 -15.83 -0.18 -8.46 16 22 C 0.18 2.87 13.03 -91.82 -1.20 1.68 16 23 N -0.28 -5.24 11.93 29.29 0.35 -4.89 16 24 H 0.06 0.94 7.71 -51.93 -0.40 0.54 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.26 5.76 -51.93 -0.30 0.96 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.73 6.74 -51.93 -0.35 0.38 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.41 6.49 -51.93 -0.34 0.07 16 33 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 34 H 0.06 0.71 6.11 -51.93 -0.32 0.39 16 35 H 0.05 1.17 5.31 -51.93 -0.28 0.90 16 36 H 0.04 1.20 7.35 -51.93 -0.38 0.81 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.11 1.34 7.34 -51.93 -0.38 0.96 16 39 H 0.13 1.23 4.62 -51.93 -0.24 0.99 16 40 H 0.22 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.21 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -36.15 330.53 -7.72 -43.87 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.91 Total: -0.22 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.20 Total: 3.78 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.34 Total: -56.35 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.15 -7.72 -43.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609191511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.894 kcal (2) G-P(sol) polarization free energy of solvation -36.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds