Wall clock time and date at job start Tue Mar 31 2020 01:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 C 1.50706 * 109.47096 * 119.99971 * 2 1 3 5 5 N 1.31375 * 126.10469 * 95.02096 * 4 2 1 6 6 C 1.35100 * 105.80089 * 180.02562 * 5 4 2 7 7 N 1.31280 * 126.64340 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00063 * 179.97438 * 7 6 5 9 9 C 1.53041 * 109.46059 * 240.02799 * 8 7 6 10 10 C 1.53194 * 109.31088 * 178.60486 * 9 8 7 11 11 N 1.46919 * 108.76690 * 54.65739 * 10 9 8 12 12 C 1.36932 * 120.63005 * 126.36281 * 11 10 9 13 13 H 1.07994 * 120.00480 * 331.85541 * 12 11 10 14 14 C 1.38814 * 119.99915 * 151.85811 * 12 11 10 15 15 N 1.31621 * 120.00096 * 343.07198 * 14 12 11 16 16 Si 1.86806 * 120.00001 * 163.07112 * 14 12 11 17 17 H 1.48496 * 109.46948 * 59.99952 * 16 14 12 18 18 H 1.48506 * 109.47108 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47035 * 299.99925 * 16 14 12 20 20 C 1.46933 * 118.73721 * 306.38400 * 11 10 9 21 21 C 1.53042 * 109.45618 * 119.97546 * 8 7 6 22 22 O 1.34687 * 106.71462 * 0.02562 * 6 5 4 23 23 N 1.21334 * 109.43870 * 359.71307 * 22 6 5 24 24 H 0.96996 * 124.87893 * 180.26248 * 23 22 6 25 25 H 1.08998 * 109.46800 * 60.00593 * 1 2 3 26 26 H 1.08996 * 109.47610 * 300.00135 * 1 2 3 27 27 H 1.09003 * 109.47374 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47085 * 239.99628 * 2 1 3 29 29 H 1.08997 * 109.46624 * 59.99875 * 3 2 1 30 30 H 1.09003 * 109.46909 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46801 * 299.99406 * 3 2 1 32 32 H 1.08998 * 109.46317 * 0.02562 * 8 7 6 33 33 H 1.08999 * 109.49673 * 298.56880 * 9 8 7 34 34 H 1.09003 * 109.49601 * 58.66553 * 9 8 7 35 35 H 1.09000 * 109.59557 * 294.86818 * 10 9 8 36 36 H 1.08994 * 109.70102 * 174.51175 * 10 9 8 37 37 H 0.96996 * 120.00045 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.58145 * 293.81870 * 20 11 10 39 39 H 1.08997 * 109.69926 * 173.46673 * 20 11 10 40 40 H 1.08999 * 109.49826 * 301.33477 * 21 8 7 41 41 H 1.09008 * 109.49854 * 61.43750 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.3780 -1.9756 1.3071 6 6 2.7611 -2.1754 2.5871 7 7 3.1863 -3.3016 3.1110 8 6 3.5668 -3.3541 4.5248 9 6 5.0349 -3.7700 4.6425 10 6 5.4389 -3.7901 6.1201 11 7 4.5060 -4.6564 6.8534 12 6 4.9716 -5.6831 7.6306 13 1 5.9095 -6.1608 7.3891 14 6 4.2380 -6.1100 8.7290 15 7 3.2898 -5.3437 9.2252 16 14 4.5965 -7.7719 9.5030 17 1 6.0035 -7.8040 9.9768 18 1 3.6815 -7.9905 10.6521 19 1 4.3890 -8.8425 8.4950 20 6 3.0638 -4.4004 6.7365 21 6 2.6866 -4.3732 5.2520 22 8 2.6212 -0.9958 3.2220 23 7 2.2102 -0.1632 2.4410 24 1 2.0332 0.7646 2.6616 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.4305 -2.3706 4.9744 33 1 5.1668 -4.7642 4.2155 34 1 5.6594 -3.0567 4.1045 35 1 5.3939 -2.7791 6.5251 36 1 6.4525 -4.1784 6.2187 37 1 2.7774 -5.6419 9.9929 38 1 2.8253 -3.4393 7.1919 39 1 2.5083 -5.1914 7.2403 40 1 1.6394 -4.0893 5.1480 41 1 2.8409 -5.3617 4.8193 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609914282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:57 Heat of formation + Delta-G solvation = 86.853963 kcal Electronic energy + Delta-G solvation = -22052.627885 eV Core-core repulsion = 18778.331175 eV Total energy + Delta-G solvation = -3274.296710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.22001 -39.50201 -37.99236 -36.81575 -35.30621 -34.03068 -32.62665 -31.67108 -30.70481 -28.07879 -27.00038 -25.52331 -24.41740 -23.85090 -23.33211 -21.26688 -20.82382 -20.24816 -19.05047 -18.71361 -17.49025 -16.83035 -16.62578 -15.78272 -15.68781 -15.39861 -15.18415 -14.88676 -14.70101 -14.34057 -14.16661 -13.26409 -13.16827 -13.08175 -13.01449 -12.95079 -12.67829 -12.58573 -12.52144 -12.28399 -12.20142 -12.06071 -12.01028 -11.88965 -11.80326 -11.39196 -11.33499 -10.65301 -10.55773 -8.92972 -8.73786 -7.89649 -5.35824 0.11129 1.06472 1.45818 1.49892 1.56430 1.76929 2.36723 2.50459 2.56887 3.24765 3.43204 3.61681 3.87494 3.94241 4.03069 4.09931 4.26916 4.39437 4.43892 4.51584 4.61536 4.75095 4.78078 4.82879 4.91182 4.92656 4.95295 5.02816 5.08519 5.10873 5.20735 5.28693 5.32244 5.36180 5.43809 5.60500 5.65177 5.78295 6.36423 6.63954 7.11102 7.22480 7.80767 8.35032 9.17731 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.048081 B = 0.003205 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.214318 B = 8734.984062 C = 8856.357892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.020 4.020 3 C -0.155 4.155 4 C 0.362 3.638 5 N -0.557 5.557 6 C 0.437 3.563 7 N -0.555 5.555 8 C 0.109 3.891 9 C -0.105 4.105 10 C 0.147 3.853 11 N -0.610 5.610 12 C -0.268 4.268 13 H 0.068 0.932 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.272 1.272 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.185 3.815 21 C -0.111 4.111 22 O -0.120 6.120 23 N -0.512 5.512 24 H 0.479 0.521 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.251 0.749 38 H -0.001 1.001 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 18.919 -20.679 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.040 4.040 3 C -0.212 4.212 4 C 0.091 3.909 5 N -0.302 5.302 6 C 0.123 3.877 7 N -0.306 5.306 8 C -0.001 4.001 9 C -0.144 4.144 10 C 0.021 3.979 11 N -0.334 5.334 12 C -0.398 4.398 13 H 0.086 0.914 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.799 3.201 17 H -0.197 1.197 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.059 3.941 21 C -0.151 4.151 22 O -0.124 6.124 23 N -0.183 5.183 24 H 0.335 0.665 25 H 0.123 0.877 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.821 17.541 -20.827 27.845 hybrid contribution 0.005 0.297 2.026 2.047 sum -5.815 17.838 -18.801 26.561 Atomic orbital electron populations 1.21911 0.90690 1.02981 1.04841 1.20349 0.97880 0.96650 0.89163 1.22014 1.01956 0.91881 1.05375 1.26204 0.86767 0.88262 0.89660 1.72526 1.29904 1.14251 1.13490 1.25212 0.92973 0.81737 0.87755 1.73358 1.29627 1.12967 1.14680 1.21079 0.95935 0.97241 0.85846 1.21881 0.94126 1.01020 0.97417 1.21015 0.93697 0.93050 0.90132 1.44304 1.01326 1.34110 1.53644 1.19515 1.06992 1.08714 1.04545 0.91432 1.25865 0.99746 1.02254 0.96758 1.70180 1.26304 1.36975 1.24720 0.85278 0.77661 0.79823 0.77307 1.19744 1.21707 1.20604 1.20522 0.84868 0.97814 0.90941 1.22021 0.97496 0.98513 0.97068 1.85197 1.76335 1.19487 1.31420 1.42501 1.61185 1.09435 1.05215 0.66516 0.87732 0.91425 0.93152 0.85875 0.90755 0.91920 0.87851 0.94402 0.92676 0.91548 0.96518 0.91830 0.93957 0.98315 0.92224 0.93077 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.18 71.98 0.66 -0.11 16 2 C -0.02 -0.14 3.39 -11.54 -0.04 -0.18 16 3 C -0.15 -0.19 8.93 71.98 0.64 0.46 16 4 C 0.36 6.48 6.93 138.19 0.96 7.44 16 5 N -0.56 -16.60 11.57 -304.50 -3.52 -20.12 16 6 C 0.44 15.44 8.95 180.22 1.61 17.06 16 7 N -0.55 -23.17 10.27 -446.77 -4.59 -27.76 16 8 C 0.11 4.70 2.82 45.02 0.13 4.83 16 9 C -0.10 -4.42 5.68 30.67 0.17 -4.25 16 10 C 0.15 6.85 6.52 86.36 0.56 7.42 16 11 N -0.61 -33.76 2.99 -699.12 -2.09 -35.85 16 12 C -0.27 -15.74 9.58 84.03 0.81 -14.93 16 13 H 0.07 3.85 7.88 -2.91 -0.02 3.82 16 14 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 15 N -0.94 -57.79 11.19 21.65 0.24 -57.54 16 16 Si 0.97 46.87 29.59 68.60 2.03 48.90 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 C 0.19 9.99 5.30 86.36 0.46 10.44 16 21 C -0.11 -5.22 5.68 30.67 0.17 -5.04 16 22 O -0.12 -3.44 10.41 64.82 0.67 -2.77 16 23 N -0.51 -8.76 6.60 -52.18 -0.34 -9.11 16 24 H 0.48 3.41 8.08 -92.71 -0.75 2.66 16 25 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.07 -0.11 7.39 -2.39 -0.02 -0.13 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.04 1.63 7.14 -2.39 -0.02 1.61 16 33 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 2.83 7.93 -2.39 -0.02 2.81 16 37 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.06 3.55 6.06 -2.39 -0.01 3.54 16 40 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -80.26 332.34 -0.77 -81.03 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 0.28 Total: 2.67 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.55 Total: 20.55 kcal Atomic # 7 Polarization: -140.08 SS G_CDS: -10.31 Total: -150.39 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: 0.67 Total: -2.77 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -80.26 -0.77 -81.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609914282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.881 kcal (2) G-P(sol) polarization free energy of solvation -80.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds