Wall clock time and date at job start Tue Mar 31 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30276 * 126.28167 * 2 1 4 4 N 1.28668 * 109.38094 * 179.73182 * 3 2 1 5 5 C 1.30274 * 109.37914 * 0.44595 * 4 3 2 6 6 C 1.50704 * 126.27983 * 179.82960 * 5 4 3 7 7 H 1.09002 * 109.47111 * 194.68364 * 6 5 4 8 8 C 1.52997 * 109.47125 * 74.68509 * 6 5 4 9 9 N 1.46896 * 109.47004 * 314.68432 * 6 5 4 10 10 C 1.46959 * 110.99832 * 190.00043 * 9 6 5 11 11 C 1.53058 * 109.36419 * 183.18928 * 10 9 6 12 12 N 1.46955 * 109.36051 * 301.59955 * 11 10 9 13 13 C 1.46906 * 110.99744 * 183.18754 * 12 11 10 14 14 C 1.50703 * 109.47109 * 169.99905 * 13 12 11 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99989 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99999 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99912 * 359.97438 * 16 14 13 19 19 H 1.48491 * 109.47368 * 90.00198 * 18 16 14 20 20 H 1.48506 * 109.46940 * 210.00455 * 18 16 14 21 21 H 1.48505 * 109.47369 * 329.99926 * 18 16 14 22 22 C 1.46959 * 110.88319 * 59.32174 * 12 11 10 23 23 C 1.46959 * 111.00113 * 313.80059 * 9 6 5 24 24 O 1.34359 * 107.43794 * 359.56017 * 5 4 3 25 25 H 1.08997 * 109.47112 * 269.99750 * 1 2 3 26 26 H 1.08998 * 109.46992 * 30.00528 * 1 2 3 27 27 H 1.09002 * 109.46444 * 150.00262 * 1 2 3 28 28 H 1.09001 * 109.47459 * 299.99634 * 8 6 5 29 29 H 1.09002 * 109.47293 * 59.99880 * 8 6 5 30 30 H 1.09008 * 109.47158 * 180.02562 * 8 6 5 31 31 H 1.08995 * 109.48972 * 63.22103 * 10 9 6 32 32 H 1.08993 * 109.50763 * 303.16812 * 10 9 6 33 33 H 1.08994 * 109.48935 * 181.63483 * 11 10 9 34 34 H 1.09001 * 109.50540 * 61.57751 * 11 10 9 35 35 H 1.08992 * 109.47459 * 289.99824 * 13 12 11 36 36 H 1.09004 * 109.47040 * 49.99975 * 13 12 11 37 37 H 0.97007 * 120.00076 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.48972 * 60.64434 * 22 12 11 39 39 H 1.08998 * 109.48999 * 180.71033 * 22 12 11 40 40 H 1.08999 * 109.48803 * 296.77931 * 23 9 6 41 41 H 1.09000 * 109.48812 * 56.82567 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5654 -0.6254 -0.0001 6 6 4.8177 -1.4637 0.0000 7 1 4.5674 -2.4908 -0.2660 8 6 5.4492 -1.4372 1.3933 9 7 5.7694 -0.9224 -0.9794 10 6 6.8983 -1.8415 -1.1804 11 6 7.9037 -1.2072 -2.1445 12 7 7.2359 -0.9110 -3.4196 13 6 8.1876 -0.3696 -4.3990 14 6 7.5329 -0.3089 -5.7550 15 1 6.5119 -0.6391 -5.8770 16 6 8.2375 0.1681 -6.8399 17 7 7.6661 0.2216 -8.0232 18 14 10.0033 0.7399 -6.6287 19 1 10.9238 -0.4044 -6.8487 20 1 10.2986 1.8096 -7.6156 21 1 10.1912 1.2692 -5.2540 22 6 6.1070 0.0082 -3.2185 23 6 5.1016 -0.6261 -2.2545 24 8 2.3022 -1.0831 0.0000 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 5.6996 -0.4102 1.6593 29 1 4.7430 -1.8389 2.1200 30 1 6.3553 -2.0432 1.3932 31 1 6.5336 -2.7790 -1.6002 32 1 7.3841 -2.0359 -0.2243 33 1 8.7277 -1.8993 -2.3178 34 1 8.2892 -0.2836 -1.7126 35 1 8.4897 0.6329 -4.0962 36 1 9.0651 -1.0144 -4.4476 37 1 8.1617 0.5575 -8.7864 38 1 6.4717 0.9456 -2.7987 39 1 5.6212 0.2022 -4.1748 40 1 4.7165 -1.5497 -2.6865 41 1 4.2773 0.0657 -2.0812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:26 Heat of formation + Delta-G solvation = 62.229538 kcal Electronic energy + Delta-G solvation = -22425.364667 eV Core-core repulsion = 19150.000162 eV Total energy + Delta-G solvation = -3275.364505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.35807 -39.18825 -36.27062 -36.10141 -33.24636 -32.45137 -31.29168 -30.63792 -28.18919 -27.91537 -25.38108 -24.23772 -23.07469 -22.56088 -21.54125 -20.84417 -19.32287 -17.65674 -17.28737 -16.78310 -16.31404 -15.52650 -14.87514 -14.55415 -14.47849 -14.38792 -13.93796 -13.76830 -13.57757 -13.27421 -13.07577 -12.71589 -12.54846 -12.40728 -12.16419 -11.96344 -11.91340 -11.76366 -11.45332 -11.01159 -10.93117 -10.83983 -10.63732 -10.41930 -10.08027 -9.83238 -9.55082 -9.25549 -8.56066 -8.36619 -7.37851 -6.04421 -4.01891 1.00407 2.01186 2.30651 3.29736 3.37316 3.39994 3.61363 3.73084 4.27891 4.43232 4.60196 4.73747 4.77363 4.91129 4.92671 5.09199 5.14779 5.26751 5.27621 5.31175 5.40250 5.50138 5.52821 5.57446 5.59609 5.70169 5.77348 5.93435 5.96283 6.08210 6.27247 6.47406 6.63994 6.81806 6.94095 6.96352 7.11239 7.59494 7.89774 8.03600 8.24717 8.66152 9.03133 9.57318 11.08687 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024597 B = 0.004053 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.065174 B = 6906.368204 C = 7669.831158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.153 3.847 3 N -0.289 5.289 4 N -0.257 5.257 5 C 0.169 3.831 6 C 0.180 3.820 7 H 0.071 0.929 8 C -0.139 4.139 9 N -0.521 5.521 10 C 0.062 3.938 11 C 0.054 3.946 12 N -0.530 5.530 13 C 0.163 3.837 14 C -0.510 4.510 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.071 3.929 23 C 0.055 3.945 24 O -0.228 6.228 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.035 0.965 35 H -0.009 1.009 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.034 0.966 39 H 0.092 0.908 40 H 0.040 0.960 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 -4.980 19.879 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.058 4.058 3 N -0.137 5.137 4 N -0.103 5.103 5 C -0.042 4.042 6 C 0.070 3.930 7 H 0.089 0.911 8 C -0.197 4.197 9 N -0.248 5.248 10 C -0.066 4.066 11 C -0.075 4.075 12 N -0.255 5.255 13 C 0.037 3.963 14 C -0.548 4.548 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.057 4.057 23 C -0.073 4.073 24 O -0.107 6.107 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.008 0.992 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.111 0.889 40 H 0.058 0.942 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.964 -3.690 19.681 22.366 hybrid contribution 0.528 -0.860 -0.136 1.018 sum -9.437 -4.549 19.545 22.176 Atomic orbital electron populations 1.20333 0.80256 1.05772 1.05032 1.28033 0.97816 0.79777 1.00129 1.74484 0.96310 1.25622 1.17248 1.74501 1.11279 1.08942 1.15624 1.27787 0.84713 0.91861 0.99851 1.20003 0.83267 0.93385 0.96380 0.91114 1.21862 1.00979 1.04373 0.92531 1.62268 1.08432 1.44257 1.09888 1.22262 0.91431 0.93739 0.99144 1.22109 0.95593 0.99450 0.90333 1.62138 1.10449 1.45504 1.07426 1.20152 0.91623 0.92763 0.91794 1.21022 1.01461 1.42069 0.90268 0.90268 1.24895 0.97960 0.95342 0.95109 1.69893 1.37251 1.47089 0.99735 0.86855 0.85710 0.78880 0.78293 1.20172 1.21200 1.19195 1.21964 0.92061 0.93311 0.98373 1.22358 0.97127 0.99719 0.88097 1.84763 1.17553 1.38554 1.69875 0.88478 0.87479 0.88955 0.90421 0.91962 0.90358 0.93690 0.90292 0.90592 0.94701 0.99177 0.95745 0.92668 0.94780 0.88932 0.94199 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.01 0.38 0.05 16 2 C 0.15 1.78 8.48 -12.94 -0.11 1.67 16 3 N -0.29 -4.33 12.22 32.55 0.40 -3.93 16 4 N -0.26 -4.15 11.22 32.55 0.37 -3.78 16 5 C 0.17 2.35 5.61 -12.94 -0.07 2.27 16 6 C 0.18 2.17 2.67 -68.87 -0.18 1.99 16 7 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 8 C -0.14 -1.32 9.19 37.16 0.34 -0.98 16 9 N -0.52 -7.66 4.56 -227.88 -1.04 -8.70 16 10 C 0.06 0.84 5.43 -3.76 -0.02 0.82 16 11 C 0.05 0.92 5.61 -3.76 -0.02 0.90 16 12 N -0.53 -11.24 4.70 -235.91 -1.11 -12.35 16 13 C 0.16 4.00 3.79 -4.97 -0.02 3.98 16 14 C -0.51 -14.61 9.03 -34.44 -0.31 -14.92 16 15 H 0.08 2.47 7.37 -52.48 -0.39 2.08 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 18 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C 0.07 1.46 5.43 -3.77 -0.02 1.44 16 23 C 0.05 0.94 5.17 -3.77 -0.02 0.92 16 24 O -0.23 -2.89 10.87 5.39 0.06 -2.83 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.62 6.63 -51.92 -0.34 0.27 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.85 6.50 -51.93 -0.34 0.51 16 33 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 36 H 0.02 0.59 7.45 -51.93 -0.39 0.21 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 2.09 6.79 -51.93 -0.35 1.74 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.25 5.92 -51.93 -0.31 0.94 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -33.83 327.72 -6.74 -40.57 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -6.30 Total: -3.96 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.15 Total: 0.03 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.61 Total: -55.76 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.06 Total: -2.83 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.83 -6.74 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.801 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds