Wall clock time and date at job start Tue Mar 31 2020 03:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47328 * 2 1 4 4 N 1.46501 * 109.47394 * 180.02562 * 3 2 1 5 5 C 1.34817 * 126.59272 * 124.71556 * 4 3 2 6 6 C 1.36598 * 106.83731 * 179.85132 * 5 4 3 7 7 C 1.47522 * 125.77110 * 180.17731 * 6 5 4 8 8 O 1.21594 * 119.99591 * 353.54900 * 7 6 5 9 9 N 1.34772 * 119.99781 * 173.54942 * 7 6 5 10 10 C 1.46500 * 120.00340 * 3.78500 * 9 7 6 11 11 C 1.50698 * 109.47173 * 83.12238 * 10 9 7 12 12 H 1.08000 * 119.99789 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00065 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00090 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99992 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47122 * 90.00273 * 15 13 11 17 17 H 1.48503 * 109.47064 * 210.00273 * 15 13 11 18 18 H 1.48502 * 109.46856 * 330.00245 * 15 13 11 19 19 C 1.46506 * 119.99769 * 183.78665 * 9 7 6 20 20 C 1.53002 * 109.46997 * 114.97736 * 19 9 7 21 21 C 1.52996 * 109.47355 * 234.97650 * 19 9 7 22 22 N 1.34405 * 108.45614 * 0.41641 * 6 5 4 23 23 N 1.28755 * 109.52698 * 359.74353 * 22 6 5 24 24 H 1.09005 * 109.47243 * 299.99601 * 1 2 3 25 25 H 1.08996 * 109.47275 * 59.99548 * 1 2 3 26 26 H 1.09007 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47399 * 120.00009 * 2 1 3 28 28 H 1.09005 * 109.47243 * 240.00399 * 2 1 3 29 29 H 1.08996 * 109.47311 * 300.00430 * 3 2 1 30 30 H 1.08998 * 109.46892 * 60.00327 * 3 2 1 31 31 H 1.08000 * 126.58166 * 359.97438 * 5 4 3 32 32 H 1.09004 * 109.47003 * 203.12336 * 10 9 7 33 33 H 1.08994 * 109.46890 * 323.12263 * 10 9 7 34 34 H 0.97001 * 120.00011 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.46836 * 354.98118 * 19 9 7 36 36 H 1.09002 * 109.47015 * 60.00492 * 20 19 9 37 37 H 1.09007 * 109.46897 * 180.02562 * 20 19 9 38 38 H 1.08993 * 109.47364 * 299.99939 * 20 19 9 39 39 H 1.09000 * 109.47109 * 59.99750 * 21 19 9 40 40 H 1.08994 * 109.47553 * 180.02562 * 21 19 9 41 41 H 1.09003 * 109.47113 * 300.00375 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3083 2.0591 -0.8906 6 6 5.5940 1.7989 -0.5097 7 6 6.8099 2.2786 -1.1937 8 8 6.7186 2.8700 -2.2523 9 7 8.0217 2.0614 -0.6453 10 6 8.1383 1.2774 0.5868 11 6 8.1433 -0.1912 0.2491 12 1 8.0677 -0.5089 -0.7803 13 6 8.2456 -1.1293 1.2543 14 7 8.3382 -0.7425 2.5079 15 14 8.2526 -2.9499 0.8357 16 1 9.6496 -3.4010 0.6121 17 1 7.6580 -3.7183 1.9587 18 1 7.4556 -3.1774 -0.3966 19 6 9.2224 2.6093 -1.2813 20 6 9.8604 3.6480 -0.3567 21 6 10.2203 1.4800 -1.5451 22 7 5.5641 1.0275 0.5905 23 7 4.3413 0.7962 0.9208 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9953 2.6476 -1.7404 32 1 9.0668 1.5365 1.0957 33 1 7.2930 1.4975 1.2387 34 1 8.4098 -1.4025 3.2151 35 1 8.9501 3.0816 -2.2253 36 1 10.1326 3.1758 0.5872 37 1 10.7535 4.0560 -0.8302 38 1 9.1495 4.4526 -0.1688 39 1 9.7658 0.7399 -2.2038 40 1 11.1138 1.8877 -2.0179 41 1 10.4924 1.0077 -0.6012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611228717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:31 Heat of formation + Delta-G solvation = 62.116836 kcal Electronic energy + Delta-G solvation = -22709.700336 eV Core-core repulsion = 19434.330944 eV Total energy + Delta-G solvation = -3275.369392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56121 -38.84605 -35.81982 -35.68374 -32.86216 -32.31104 -31.28018 -29.87519 -27.05010 -26.86938 -26.47597 -23.35141 -22.75978 -22.58820 -21.16202 -20.34018 -18.41332 -17.07015 -16.30691 -16.01912 -15.74581 -15.24954 -14.92774 -14.28329 -14.20531 -14.03667 -13.50175 -13.47340 -12.96232 -12.71351 -12.32601 -12.20810 -12.15415 -11.72370 -11.66537 -11.55916 -11.52519 -11.29011 -10.95746 -10.84785 -10.73383 -10.66902 -10.30329 -9.82285 -9.78950 -9.68155 -9.41314 -9.17890 -8.65923 -8.22260 -7.55231 -5.88433 -3.88545 1.68118 2.49756 2.57532 3.37574 3.44257 3.48007 3.93081 4.10315 4.40463 4.56456 4.62247 4.81658 4.93064 5.09491 5.19820 5.28779 5.40447 5.48064 5.50188 5.61998 5.73948 5.76917 5.77644 5.91019 5.94978 6.06239 6.17789 6.25656 6.35269 6.46789 6.49822 6.81954 6.84794 6.98676 7.10229 7.62784 7.83081 8.03731 8.39620 8.43317 8.71734 9.04725 9.15287 9.73173 11.20207 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.006765 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.517460 B = 4137.653416 C = 5690.093700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.126 3.874 4 N -0.377 5.377 5 C 0.071 3.929 6 C -0.089 4.089 7 C 0.599 3.401 8 O -0.582 6.582 9 N -0.575 5.575 10 C 0.230 3.770 11 C -0.504 4.504 12 H 0.051 0.949 13 C 0.072 3.928 14 N -0.888 5.888 15 Si 0.885 3.115 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.135 3.865 20 C -0.158 4.158 21 C -0.151 4.151 22 N -0.131 5.131 23 N -0.084 5.084 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.194 0.806 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.259 0.741 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 6.042 -4.987 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.005 3.995 4 N -0.161 5.161 5 C -0.086 4.086 6 C -0.228 4.228 7 C 0.386 3.614 8 O -0.463 6.463 9 N -0.304 5.304 10 C 0.110 3.890 11 C -0.543 4.543 12 H 0.069 0.931 13 C -0.130 4.130 14 N -0.527 5.527 15 Si 0.713 3.287 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.031 3.969 20 C -0.216 4.216 21 C -0.209 4.209 22 N -0.005 5.005 23 N -0.064 5.064 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.211 0.789 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.533 5.396 -4.052 12.509 hybrid contribution -0.214 -0.669 -0.987 1.212 sum -10.747 4.727 -5.040 12.777 Atomic orbital electron populations 1.21696 0.94351 1.02531 1.02007 1.21827 0.96388 0.95146 1.04399 1.21927 0.73935 0.99458 1.04223 1.50632 1.08171 1.36383 1.20954 1.23151 0.90663 0.98626 0.96115 1.21484 0.93965 1.07882 0.99473 1.16814 0.82403 0.78663 0.83515 1.90664 1.86997 1.45934 1.22751 1.48236 1.04037 1.50378 1.27703 1.19818 0.99060 0.89796 0.80279 1.21210 1.49695 0.90554 0.92878 0.93054 1.24739 0.95347 0.98086 0.94850 1.69912 1.50321 1.33590 0.98912 0.86719 0.77846 0.86232 0.77861 1.20934 1.21327 1.20319 1.20904 0.85416 0.94066 0.96481 1.22135 1.00053 0.98686 1.00753 1.22043 0.97393 0.98251 1.03223 1.75413 1.09763 1.06620 1.08664 1.82145 0.94305 1.17603 1.12314 0.92256 0.92487 0.91911 0.89905 0.91141 0.88532 0.88994 0.78947 0.95078 0.91474 0.93100 0.89559 0.91730 0.92303 0.93047 0.92580 0.93234 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.15 0.37 -0.67 16 2 C -0.14 -1.39 6.14 -26.73 -0.16 -1.55 16 3 C 0.13 1.26 6.54 -4.04 -0.03 1.23 16 4 N -0.38 -5.86 3.69 -61.06 -0.23 -6.09 16 5 C 0.07 1.16 11.28 -16.83 -0.19 0.97 16 6 C -0.09 -1.89 6.67 -83.55 -0.56 -2.45 16 7 C 0.60 13.44 7.60 -12.48 -0.09 13.34 16 8 O -0.58 -13.24 16.21 5.28 0.09 -13.15 16 9 N -0.57 -12.86 2.38 -168.70 -0.40 -13.26 16 10 C 0.23 5.79 3.91 -5.19 -0.02 5.77 16 11 C -0.50 -13.72 7.41 -34.44 -0.26 -13.98 16 12 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 13 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 14 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 15 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 C 0.14 2.59 3.22 -67.93 -0.22 2.37 16 20 C -0.16 -2.61 9.26 37.16 0.34 -2.27 16 21 C -0.15 -2.79 8.66 37.16 0.32 -2.47 16 22 N -0.13 -3.07 8.04 32.85 0.26 -2.81 16 23 N -0.08 -1.73 13.65 60.35 0.82 -0.91 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.03 0.81 6.48 -51.93 -0.34 0.48 16 33 H 0.07 1.82 5.36 -51.93 -0.28 1.54 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.09 1.66 6.91 -51.93 -0.36 1.30 16 36 H 0.06 1.13 6.91 -51.93 -0.36 0.77 16 37 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.53 7.09 -51.93 -0.37 1.16 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -32.82 340.59 -5.51 -38.33 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.32 Total: -1.48 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.59 Total: 2.20 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 1.20 Total: -48.07 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.82 -5.51 -38.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611228717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.451 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds