Wall clock time and date at job start Tue Mar 31 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47328 * 2 1 4 4 N 1.46501 * 109.47394 * 180.02562 * 3 2 1 5 5 C 1.34817 * 126.59272 * 124.71556 * 4 3 2 6 6 C 1.36598 * 106.83731 * 179.85132 * 5 4 3 7 7 C 1.47522 * 125.77110 * 180.17731 * 6 5 4 8 8 O 1.21594 * 119.99591 * 353.54900 * 7 6 5 9 9 N 1.34772 * 119.99781 * 173.54942 * 7 6 5 10 10 C 1.46500 * 120.00340 * 3.78500 * 9 7 6 11 11 C 1.50698 * 109.47173 * 83.12238 * 10 9 7 12 12 H 1.08000 * 119.99789 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00065 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00090 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99992 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47122 * 90.00273 * 15 13 11 17 17 H 1.48503 * 109.47064 * 210.00273 * 15 13 11 18 18 H 1.48502 * 109.46856 * 330.00245 * 15 13 11 19 19 C 1.46506 * 119.99769 * 183.78665 * 9 7 6 20 20 C 1.53002 * 109.46997 * 114.97736 * 19 9 7 21 21 C 1.52996 * 109.47355 * 234.97650 * 19 9 7 22 22 N 1.34405 * 108.45614 * 0.41641 * 6 5 4 23 23 N 1.28755 * 109.52698 * 359.74353 * 22 6 5 24 24 H 1.09005 * 109.47243 * 299.99601 * 1 2 3 25 25 H 1.08996 * 109.47275 * 59.99548 * 1 2 3 26 26 H 1.09007 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47399 * 120.00009 * 2 1 3 28 28 H 1.09005 * 109.47243 * 240.00399 * 2 1 3 29 29 H 1.08996 * 109.47311 * 300.00430 * 3 2 1 30 30 H 1.08998 * 109.46892 * 60.00327 * 3 2 1 31 31 H 1.08000 * 126.58166 * 359.97438 * 5 4 3 32 32 H 1.09004 * 109.47003 * 203.12336 * 10 9 7 33 33 H 1.08994 * 109.46890 * 323.12263 * 10 9 7 34 34 H 0.97001 * 120.00011 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.46836 * 354.98118 * 19 9 7 36 36 H 1.09002 * 109.47015 * 60.00492 * 20 19 9 37 37 H 1.09007 * 109.46897 * 180.02562 * 20 19 9 38 38 H 1.08993 * 109.47364 * 299.99939 * 20 19 9 39 39 H 1.09000 * 109.47109 * 59.99750 * 21 19 9 40 40 H 1.08994 * 109.47553 * 180.02562 * 21 19 9 41 41 H 1.09003 * 109.47113 * 300.00375 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3083 2.0591 -0.8906 6 6 5.5940 1.7989 -0.5097 7 6 6.8099 2.2786 -1.1937 8 8 6.7186 2.8700 -2.2523 9 7 8.0217 2.0614 -0.6453 10 6 8.1383 1.2774 0.5868 11 6 8.1433 -0.1912 0.2491 12 1 8.0677 -0.5089 -0.7803 13 6 8.2456 -1.1293 1.2543 14 7 8.3382 -0.7425 2.5079 15 14 8.2526 -2.9499 0.8357 16 1 9.6496 -3.4010 0.6121 17 1 7.6580 -3.7183 1.9587 18 1 7.4556 -3.1774 -0.3966 19 6 9.2224 2.6093 -1.2813 20 6 9.8604 3.6480 -0.3567 21 6 10.2203 1.4800 -1.5451 22 7 5.5641 1.0275 0.5905 23 7 4.3413 0.7962 0.9208 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9953 2.6476 -1.7404 32 1 9.0668 1.5365 1.0957 33 1 7.2930 1.4975 1.2387 34 1 8.4098 -1.4025 3.2151 35 1 8.9501 3.0816 -2.2253 36 1 10.1326 3.1758 0.5872 37 1 10.7535 4.0560 -0.8302 38 1 9.1495 4.4526 -0.1688 39 1 9.7658 0.7399 -2.2038 40 1 11.1138 1.8877 -2.0179 41 1 10.4924 1.0077 -0.6012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611228717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:30 Heat of formation + Delta-G solvation = 41.009300 kcal Electronic energy + Delta-G solvation = -22710.615628 eV Core-core repulsion = 19434.330944 eV Total energy + Delta-G solvation = -3276.284683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.00767 -40.52264 -37.38725 -36.82131 -34.77493 -33.58811 -32.93052 -31.31924 -29.04376 -27.94232 -27.82633 -25.08182 -24.59095 -23.64875 -22.35579 -21.73812 -19.98111 -18.69342 -18.24844 -17.51684 -17.03366 -16.82306 -16.25434 -16.04473 -15.57181 -15.50017 -14.95928 -14.65692 -14.39256 -14.15570 -13.85795 -13.49880 -13.47462 -13.21019 -13.03716 -12.93496 -12.81345 -12.72494 -12.66168 -12.30299 -12.23945 -12.12369 -11.77361 -11.58253 -11.46076 -11.32113 -11.07297 -10.90809 -10.36216 -10.13351 -9.35097 -8.02986 -6.08154 0.33444 0.94282 1.34558 1.37426 1.39408 1.47307 2.29450 2.43932 2.52347 3.30563 3.45092 3.51593 3.84051 3.86997 4.08456 4.15383 4.22016 4.31098 4.31917 4.46139 4.47822 4.62700 4.74084 4.79134 4.84925 4.88748 4.99970 5.02528 5.11963 5.19240 5.21479 5.34802 5.36718 5.52328 5.58840 5.69337 5.88855 5.98986 6.29296 6.60242 6.95121 7.19350 7.40976 7.56965 9.04796 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.006765 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.517460 B = 4137.653416 C = 5690.093700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.114 3.886 4 N -0.356 5.356 5 C 0.101 3.899 6 C -0.131 4.131 7 C 0.594 3.406 8 O -0.590 6.590 9 N -0.583 5.583 10 C 0.251 3.749 11 C -0.497 4.497 12 H 0.035 0.965 13 C 0.029 3.971 14 N -0.916 5.916 15 Si 0.936 3.064 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.283 1.283 19 C 0.126 3.874 20 C -0.149 4.149 21 C -0.142 4.142 22 N -0.179 5.179 23 N -0.116 5.116 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.239 0.761 32 H 0.016 0.984 33 H 0.051 0.949 34 H 0.260 0.740 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.037 0.963 40 H 0.088 0.912 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 6.952 -6.497 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.141 5.141 5 C -0.057 4.057 6 C -0.271 4.271 7 C 0.382 3.618 8 O -0.473 6.473 9 N -0.311 5.311 10 C 0.130 3.870 11 C -0.536 4.536 12 H 0.053 0.947 13 C -0.170 4.170 14 N -0.557 5.557 15 Si 0.764 3.236 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.209 1.209 19 C 0.023 3.977 20 C -0.207 4.207 21 C -0.200 4.200 22 N -0.051 5.051 23 N -0.096 5.096 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.160 0.840 30 H 0.129 0.871 31 H 0.255 0.745 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.997 6.294 -5.553 14.641 hybrid contribution 0.088 -0.887 -0.594 1.071 sum -11.909 5.407 -6.147 14.451 Atomic orbital electron populations 1.21654 0.91664 1.03014 1.03473 1.21791 0.98585 0.94740 1.02422 1.22557 0.70445 1.00128 1.07399 1.50980 1.09928 1.34039 1.19104 1.23723 0.88970 0.96921 0.96098 1.21674 0.95378 1.09757 1.00292 1.17070 0.82821 0.78434 0.83497 1.90632 1.87235 1.46494 1.22901 1.48263 1.05375 1.50393 1.27098 1.19331 0.97352 0.89102 0.81166 1.21236 1.48741 0.91795 0.91852 0.94692 1.25331 0.95403 1.01448 0.94815 1.70005 1.51566 1.34569 0.99555 0.85904 0.78183 0.82312 0.77235 1.19706 1.21109 1.20858 1.21187 0.84662 0.94800 0.97016 1.22061 1.01245 0.97711 0.99662 1.21962 0.98643 0.97662 1.01754 1.75358 1.11353 1.08207 1.10184 1.82007 0.94337 1.19168 1.14099 0.91287 0.90468 0.92020 0.92777 0.92354 0.84013 0.87109 0.74505 0.96595 0.93187 0.93140 0.89201 0.93310 0.88805 0.93035 0.94383 0.89367 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.14 -2.50 6.14 30.59 0.19 -2.31 16 3 C 0.11 1.91 6.54 86.38 0.56 2.47 16 4 N -0.36 -10.49 3.69 -347.10 -1.28 -11.77 16 5 C 0.10 3.11 11.28 83.85 0.95 4.06 16 6 C -0.13 -5.56 6.67 40.82 0.27 -5.29 16 7 C 0.59 26.75 7.60 86.69 0.66 27.41 16 8 O -0.59 -26.35 16.21 -4.01 -0.07 -26.42 16 9 N -0.58 -26.54 2.38 -805.89 -1.91 -28.45 16 10 C 0.25 13.11 3.91 85.63 0.33 13.45 16 11 C -0.50 -27.89 7.41 25.60 0.19 -27.70 16 12 H 0.03 2.04 7.81 -2.91 -0.02 2.01 16 13 C 0.03 1.67 5.46 84.65 0.46 2.13 16 14 N -0.92 -54.55 13.29 21.45 0.28 -54.27 16 15 Si 0.94 46.05 29.54 68.60 2.03 48.07 16 16 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 18 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 19 C 0.13 4.78 3.22 44.99 0.15 4.93 16 20 C -0.15 -4.78 9.26 71.98 0.67 -4.11 16 21 C -0.14 -5.21 8.66 71.98 0.62 -4.58 16 22 N -0.18 -8.59 8.04 -49.99 -0.40 -8.99 16 23 N -0.12 -4.86 13.65 37.02 0.51 -4.36 16 24 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.14 1.20 8.08 -2.39 -0.02 1.18 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.24 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.02 0.88 6.48 -2.39 -0.02 0.86 16 33 H 0.05 2.85 5.36 -2.39 -0.01 2.84 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.09 3.36 6.91 -2.39 -0.02 3.34 16 36 H 0.05 1.71 6.91 -2.39 -0.02 1.70 16 37 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.05 2.08 7.09 -2.39 -0.02 2.06 16 Total: -1.00 -74.37 340.59 5.93 -68.44 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.01 Total: 8.17 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.76 Total: 9.58 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -2.81 Total: -107.84 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.07 Total: -26.42 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -74.37 5.93 -68.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611228717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.453 kcal (2) G-P(sol) polarization free energy of solvation -74.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds