Wall clock time and date at job start Tue Mar 31 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34946 * 126.04261 * 2 1 4 4 C 1.35315 * 107.74887 * 180.15181 * 3 2 1 5 5 C 1.50699 * 126.04126 * 179.87506 * 4 3 2 6 6 C 1.52997 * 109.47078 * 299.71466 * 5 4 3 7 7 C 1.53006 * 109.46866 * 59.71289 * 5 4 3 8 8 N 1.46500 * 109.46939 * 179.71175 * 5 4 3 9 9 C 1.34778 * 119.99620 * 179.97438 * 8 5 4 10 10 O 1.21585 * 120.00326 * 0.02562 * 9 8 5 11 11 N 1.34776 * 119.99561 * 180.02562 * 9 8 5 12 12 C 1.46502 * 119.99652 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47232 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47281 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00168 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00028 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99845 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00216 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47556 * 89.99414 * 18 16 14 20 20 H 1.48497 * 109.47148 * 209.99815 * 18 16 14 21 21 H 1.48504 * 109.46928 * 329.99327 * 18 16 14 22 22 C 1.39872 * 107.91599 * 359.60825 * 4 3 2 23 23 N 1.30837 * 108.20499 * 0.24515 * 22 4 3 24 24 H 1.08998 * 109.47157 * 270.31004 * 1 2 3 25 25 H 1.09003 * 109.47278 * 30.30454 * 1 2 3 26 26 H 1.08993 * 109.47691 * 150.30806 * 1 2 3 27 27 H 1.08005 * 126.12512 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 31 31 H 1.08993 * 109.46955 * 300.00219 * 7 5 4 32 32 H 1.09000 * 109.47050 * 60.00048 * 7 5 4 33 33 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 34 34 H 0.96994 * 119.99907 * 0.02562 * 8 5 4 35 35 H 0.96996 * 120.00785 * 359.97438 * 11 9 8 36 36 H 1.09008 * 109.47028 * 299.99795 * 12 11 9 37 37 H 1.08998 * 109.47523 * 59.99538 * 12 11 9 38 38 H 1.09008 * 109.46858 * 299.99791 * 13 12 11 39 39 H 1.08998 * 109.47332 * 59.99312 * 13 12 11 40 40 H 0.97001 * 119.99772 * 179.97438 * 17 16 14 41 41 H 1.08000 * 125.89488 * 180.26034 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5437 0.6664 -0.0034 5 6 4.7681 1.5451 -0.0073 6 6 4.7620 2.4227 -1.2606 7 6 4.7617 2.4341 1.2379 8 7 5.9701 0.7076 -0.0033 9 6 7.1902 1.2802 -0.0064 10 8 7.2933 2.4916 -0.0119 11 7 8.2961 0.5097 -0.0032 12 6 9.6223 1.1320 -0.0060 13 6 10.6968 0.0428 -0.0021 14 6 12.0611 0.6830 -0.0056 15 1 12.1526 1.7591 -0.0104 16 6 13.1924 -0.1052 -0.0035 17 7 13.0809 -1.4156 0.0019 18 14 14.8835 0.6883 -0.0071 19 1 15.3324 0.9034 1.3921 20 1 15.8463 -0.2015 -0.7046 21 1 14.8162 1.9938 -0.7116 22 6 3.5345 -0.7323 0.0035 23 7 2.2890 -1.1328 0.0055 24 1 -0.3633 0.0056 1.0276 25 1 -0.3634 0.8873 -0.5186 26 1 -0.3634 -0.8926 -0.5090 27 1 1.9282 2.1193 0.0004 28 1 4.7665 1.7893 -2.1477 29 1 5.6473 3.0585 -1.2631 30 1 3.8676 3.0457 -1.2635 31 1 3.8674 3.0571 1.2350 32 1 4.7660 1.8089 2.1308 33 1 5.6475 3.0693 1.2354 34 1 5.8878 -0.2588 0.0007 35 1 8.2139 -0.4568 0.0016 36 1 9.7329 1.7478 -0.8986 37 1 9.7331 1.7553 0.8813 38 1 10.5864 -0.5733 0.8903 39 1 10.5859 -0.5801 -0.8896 40 1 13.8768 -1.9700 0.0030 41 1 4.4053 -1.3712 0.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:21 Heat of formation + Delta-G solvation = 42.752786 kcal Electronic energy + Delta-G solvation = -21546.267918 eV Core-core repulsion = 18270.058838 eV Total energy + Delta-G solvation = -3276.209080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63100 -39.69932 -36.49466 -34.56880 -33.25014 -32.90512 -31.76748 -29.62782 -28.84406 -27.11500 -27.08377 -24.70372 -22.74464 -21.44663 -20.93024 -20.29755 -19.32404 -18.32526 -17.04829 -16.28665 -15.74998 -15.45341 -15.03761 -14.64336 -14.51352 -14.30641 -13.98576 -13.74531 -13.30908 -13.17315 -13.14574 -12.88704 -12.72158 -12.25906 -12.01044 -11.84535 -11.67643 -11.20201 -11.13816 -10.97341 -10.67372 -10.58871 -10.24705 -9.69392 -9.67604 -9.44204 -9.18193 -9.04037 -8.53587 -8.43150 -8.16511 -6.05460 -4.07786 1.60955 2.21891 2.53569 3.12153 3.32390 3.38482 3.43125 3.69772 4.17164 4.42323 4.54052 4.64390 4.75029 4.81330 4.97976 5.01143 5.09118 5.30650 5.31665 5.42833 5.60728 5.73523 5.84163 5.97243 6.06864 6.29751 6.33668 6.44314 6.45713 6.48811 6.69271 6.82446 6.86420 7.10691 7.35815 7.41577 7.62775 7.68927 7.94298 8.31262 8.53957 8.97754 9.11182 9.56728 11.06245 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041004 B = 0.002823 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.690773 B = 9915.526971 C =10396.548512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.377 5.377 3 C 0.066 3.934 4 C -0.231 4.231 5 C 0.275 3.725 6 C -0.158 4.158 7 C -0.158 4.158 8 N -0.745 5.745 9 C 0.703 3.297 10 O -0.594 6.594 11 N -0.740 5.740 12 C 0.141 3.859 13 C 0.012 3.988 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.054 3.946 23 N -0.294 5.294 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.175 0.825 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.390 0.610 35 H 0.392 0.608 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.970 3.026 -0.064 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.080 4.080 4 C -0.243 4.243 5 C 0.187 3.813 6 C -0.217 4.217 7 C -0.217 4.217 8 N -0.402 5.402 9 C 0.403 3.597 10 O -0.473 6.473 11 N -0.394 5.394 12 C 0.019 3.981 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.132 4.132 23 N -0.115 5.115 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.192 0.808 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.225 0.775 35 H 0.225 0.775 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -26.701 2.990 -0.072 26.868 hybrid contribution 1.337 -0.020 0.026 1.337 sum -25.364 2.970 -0.045 25.537 Atomic orbital electron populations 1.21852 0.74160 1.04520 1.03387 1.48462 1.06636 1.03793 1.57060 1.22114 0.90375 0.93385 1.02172 1.20077 0.94225 0.93826 1.16172 1.18106 0.79407 0.87963 0.95817 1.22264 1.03206 0.99858 0.96326 1.22265 1.03205 0.99800 0.96393 1.45260 1.04217 1.09221 1.81525 1.15986 0.80192 0.85744 0.77781 1.90811 1.85951 1.12159 1.58350 1.45556 1.05892 1.09301 1.78609 1.21557 0.78760 0.97264 1.00565 1.19325 0.92013 0.93397 0.97774 1.21061 0.90390 0.93265 1.51097 0.92231 1.25000 0.99451 0.94826 0.95083 1.69960 1.29376 1.03507 1.50545 0.86517 0.83628 0.79263 0.78169 1.20590 1.21225 1.19728 1.23633 0.95221 0.94388 0.99965 1.77378 1.01548 1.08158 1.24403 0.90742 0.89452 0.89270 0.80833 0.92894 0.89636 0.92589 0.92582 0.92902 0.89633 0.77519 0.77516 0.92838 0.92841 0.96012 0.95999 0.92900 0.80201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.47 59.85 0.69 1.16 16 2 N -0.38 -3.40 4.01 -68.17 -0.27 -3.67 16 3 C 0.07 0.57 10.80 -17.22 -0.19 0.38 16 4 C -0.23 -2.41 4.80 -105.05 -0.50 -2.92 16 5 C 0.28 3.27 0.96 -132.97 -0.13 3.14 16 6 C -0.16 -1.92 8.28 37.16 0.31 -1.61 16 7 C -0.16 -1.92 8.28 37.16 0.31 -1.61 16 8 N -0.75 -9.79 5.08 -53.50 -0.27 -10.06 16 9 C 0.70 12.09 7.98 -86.92 -0.69 11.40 16 10 O -0.59 -12.00 12.55 5.29 0.07 -11.93 16 11 N -0.74 -13.12 5.56 -65.22 -0.36 -13.48 16 12 C 0.14 3.05 5.61 -4.04 -0.02 3.02 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.05 0.58 11.15 -17.36 -0.19 0.39 16 23 N -0.29 -3.39 12.58 30.62 0.39 -3.00 16 24 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.29 6.16 -51.93 -0.32 0.97 16 30 H 0.06 0.54 8.01 -51.93 -0.42 0.12 16 31 H 0.06 0.54 8.00 -51.93 -0.42 0.12 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.29 6.16 -51.93 -0.32 0.97 16 34 H 0.39 4.21 6.47 -40.82 -0.26 3.95 16 35 H 0.39 6.04 8.49 -40.82 -0.35 5.69 16 36 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.18 1.56 6.71 -52.49 -0.35 1.21 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -34.16 340.30 -6.79 -40.95 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.20 Total: 4.92 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.98 Total: 0.23 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.21 Total: -55.81 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.16 -6.79 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.704 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds