Wall clock time and date at job start Tue Mar 31 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28445 * 125.18570 * 2 1 4 4 C 1.30863 * 110.92444 * 180.28508 * 3 2 1 5 5 C 1.39675 * 107.86265 * 359.71174 * 4 3 2 6 6 C 1.50696 * 127.32440 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47049 * 260.02621 * 6 5 4 8 8 C 1.36597 * 125.19259 * 179.78940 * 2 1 3 9 9 C 1.47159 * 126.88397 * 359.97438 * 8 2 1 10 10 O 1.21625 * 120.00449 * 99.63336 * 9 8 2 11 11 N 1.34778 * 120.00042 * 279.64138 * 9 8 2 12 12 C 1.46494 * 120.00419 * 174.80822 * 11 9 8 13 13 C 1.52993 * 109.47574 * 180.27358 * 12 11 9 14 14 C 1.53002 * 109.46913 * 299.99918 * 13 12 11 15 15 C 1.52999 * 109.47468 * 59.99588 * 13 12 11 16 16 C 1.50696 * 109.47538 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99701 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00422 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99724 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00287 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47224 * 89.99961 * 20 18 16 22 22 H 1.48497 * 109.47335 * 210.00301 * 20 18 16 23 23 H 1.48510 * 109.47136 * 330.00082 * 20 18 16 24 24 H 1.09009 * 109.47112 * 275.20094 * 1 2 3 25 25 H 1.08995 * 109.47853 * 35.19975 * 1 2 3 26 26 H 1.09003 * 109.47030 * 155.20565 * 1 2 3 27 27 H 1.07999 * 126.07060 * 179.74655 * 4 3 2 28 28 H 1.09005 * 109.47157 * 20.01951 * 6 5 4 29 29 H 1.09000 * 109.47729 * 140.01775 * 6 5 4 30 30 H 1.00895 * 111.00333 * 56.03985 * 7 6 5 31 31 H 1.00897 * 110.99921 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99664 * 355.07869 * 11 9 8 33 33 H 1.09001 * 109.46989 * 300.27258 * 12 11 9 34 34 H 1.09006 * 109.47211 * 60.26941 * 12 11 9 35 35 H 1.08994 * 109.47554 * 60.00129 * 14 13 12 36 36 H 1.09009 * 109.47213 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47338 * 299.99783 * 14 13 12 38 38 H 1.09001 * 109.46760 * 60.00305 * 15 13 12 39 39 H 1.08995 * 109.47217 * 180.02562 * 15 13 12 40 40 H 1.09003 * 109.46978 * 300.00187 * 15 13 12 41 41 H 0.97008 * 119.99553 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0498 0.0000 4 6 3.4734 0.7274 -0.0061 5 6 3.5612 -0.6666 -0.0037 6 6 4.8145 -1.5032 -0.0093 7 7 5.0808 -1.9773 -1.3739 8 6 2.2522 -1.1163 0.0041 9 6 1.7993 -2.5165 0.0098 10 8 1.7795 -3.1535 -1.0261 11 7 1.4064 -3.0930 1.1629 12 6 0.8488 -4.4476 1.1519 13 6 0.4797 -4.8589 2.5785 14 6 1.7316 -4.8299 3.4576 15 6 -0.5588 -3.8845 3.1378 16 6 -0.0944 -6.2522 2.5671 17 1 -0.1872 -6.7903 1.6353 18 6 -0.5012 -6.8400 3.7461 19 7 -0.3887 -6.1844 4.8806 20 14 -1.2123 -8.5673 3.7319 21 1 -0.1171 -9.5548 3.9070 22 1 -2.1892 -8.7096 4.8412 23 1 -1.8958 -8.8107 2.4361 24 1 -0.3634 0.0932 1.0235 25 1 -0.3634 0.8397 -0.5923 26 1 -0.3633 -0.9330 -0.4310 27 1 4.3047 1.4168 -0.0113 28 1 5.6548 -0.9011 0.3365 29 1 4.6835 -2.3585 0.6536 30 1 5.1422 -1.2046 -2.0197 31 1 5.9167 -2.5416 -1.4040 32 1 1.4891 -2.6094 1.9997 33 1 -0.0431 -4.4683 0.5256 34 1 1.5887 -5.1419 0.7535 35 1 2.1465 -3.8220 3.4660 36 1 1.4688 -5.1234 4.4740 37 1 2.4716 -5.5241 3.0593 38 1 -1.4507 -3.9052 2.5115 39 1 -0.8214 -4.1773 4.1543 40 1 -0.1439 -2.8766 3.1461 41 1 -0.6753 -6.5979 5.7101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719185145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:22 Heat of formation + Delta-G solvation = 16.612299 kcal Electronic energy + Delta-G solvation = -22550.804469 eV Core-core repulsion = 19273.461852 eV Total energy + Delta-G solvation = -3277.342617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.52399 -40.54718 -38.11904 -36.20112 -35.05440 -33.91190 -32.84628 -31.49147 -28.41103 -27.57546 -27.51950 -26.92649 -25.69778 -23.59769 -21.79924 -20.93462 -20.61233 -19.08519 -17.81998 -17.42474 -17.04087 -16.81775 -16.53009 -16.45897 -15.95091 -15.34855 -15.28070 -14.80770 -14.58993 -14.42233 -14.07214 -13.94829 -13.69814 -13.49603 -13.23061 -13.11315 -13.09902 -12.69138 -12.59785 -12.26529 -12.13540 -11.68606 -11.49314 -11.39969 -11.08914 -10.70795 -10.39795 -10.17309 -10.04781 -9.86979 -9.48031 -8.01692 -6.17313 0.59395 1.12554 1.43816 1.47213 1.54804 1.64800 1.76780 2.26221 2.49197 3.22483 3.49872 3.62459 3.85115 4.12285 4.16626 4.24935 4.37856 4.41845 4.48907 4.52199 4.58967 4.69482 4.74092 4.96061 5.03086 5.04399 5.09462 5.18178 5.29215 5.49396 5.52497 5.66262 5.68177 5.74908 6.13776 6.20487 6.29392 6.42799 6.48624 6.68739 6.86461 7.03347 7.10167 7.50635 8.97252 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.004296 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.267942 B = 6516.843433 C = 6910.531338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.276 5.276 3 N -0.299 5.299 4 C 0.011 3.989 5 C -0.167 4.167 6 C 0.140 3.860 7 N -0.857 5.857 8 C -0.025 4.025 9 C 0.590 3.410 10 O -0.556 6.556 11 N -0.696 5.696 12 C 0.149 3.851 13 C 0.052 3.948 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.526 4.526 17 H 0.046 0.954 18 C 0.030 3.970 19 N -0.899 5.899 20 Si 0.944 3.056 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.275 1.275 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.217 0.783 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.347 0.653 31 H 0.352 0.648 32 H 0.407 0.593 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.023 0.977 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 14.017 -5.880 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.064 5.064 3 N -0.129 5.129 4 C -0.166 4.166 5 C -0.178 4.178 6 C 0.009 3.991 7 N -0.390 5.390 8 C -0.155 4.155 9 C 0.373 3.627 10 O -0.433 6.433 11 N -0.347 5.347 12 C 0.025 3.975 13 C 0.052 3.948 14 C -0.179 4.179 15 C -0.178 4.178 16 C -0.565 4.565 17 H 0.065 0.935 18 C -0.170 4.170 19 N -0.538 5.538 20 Si 0.771 3.229 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.200 1.200 24 H 0.122 0.878 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.234 0.766 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.244 0.756 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.324 14.050 -6.346 16.310 hybrid contribution 0.842 -1.184 0.540 1.550 sum 6.165 12.867 -5.806 15.404 Atomic orbital electron populations 1.22448 0.71675 1.05891 1.06158 1.45809 1.08324 1.01333 1.50949 1.73114 1.04735 1.13600 1.21454 1.23946 0.93934 0.93938 1.04801 1.20812 0.92850 0.94689 1.09434 1.19957 0.92021 0.96184 0.90962 1.58516 1.45675 1.27706 1.07054 1.21387 0.92877 0.88428 1.12825 1.17210 0.76902 0.84800 0.83768 1.90811 1.54138 1.64762 1.33588 1.46130 1.61935 1.17667 1.08996 1.21392 0.96092 0.80646 0.99335 1.18354 0.93228 0.94343 0.88911 1.21682 0.96490 0.97312 1.02438 1.21664 0.97847 0.95892 1.02372 1.21243 1.41640 1.00304 0.93310 0.93524 1.25431 0.95845 1.00419 0.95341 1.69911 1.47847 1.37812 0.98224 0.85772 0.78254 0.81350 0.77502 1.20632 1.20948 1.19958 0.87806 0.86398 0.89560 0.76612 0.91170 0.92171 0.83977 0.83335 0.75628 0.93402 0.93954 0.94926 0.91839 0.96186 0.95740 0.91943 0.94830 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 11.22 127.77 1.43 2.97 16 2 N -0.28 -7.27 3.75 -356.02 -1.33 -8.60 16 3 N -0.30 -7.57 11.90 -57.14 -0.68 -8.25 16 4 C 0.01 0.25 12.00 85.18 1.02 1.27 16 5 C -0.17 -4.28 5.81 -19.48 -0.11 -4.40 16 6 C 0.14 3.12 7.17 85.56 0.61 3.74 16 7 N -0.86 -19.26 9.61 -190.01 -1.83 -21.09 16 8 C -0.03 -0.76 6.71 40.79 0.27 -0.48 16 9 C 0.59 21.05 6.83 86.59 0.59 21.65 16 10 O -0.56 -24.18 17.12 -4.11 -0.07 -24.25 16 11 N -0.70 -24.20 4.95 -466.65 -2.31 -26.51 16 12 C 0.15 6.14 4.51 86.38 0.39 6.53 16 13 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 14 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 15 C -0.12 -5.13 8.08 71.98 0.58 -4.54 16 16 C -0.53 -27.15 8.01 25.60 0.21 -26.95 16 17 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 18 C 0.03 1.52 5.15 84.65 0.44 1.96 16 19 N -0.90 -47.15 9.35 21.45 0.20 -46.95 16 20 Si 0.94 41.90 29.54 68.60 2.03 43.93 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.09 1.85 7.65 -2.39 -0.02 1.83 16 27 H 0.22 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.35 6.72 8.98 -89.70 -0.81 5.91 16 31 H 0.35 6.35 9.08 -89.70 -0.81 5.54 16 32 H 0.41 12.91 6.15 -92.71 -0.57 12.34 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 36 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 40 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 41 H 0.26 13.16 8.31 -92.70 -0.77 12.39 16 Total: -1.00 -64.37 338.57 0.87 -63.50 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -1.12 Total: 28.92 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.99 Total: -0.69 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -5.95 Total: -111.40 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.07 Total: -24.25 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -64.37 0.87 -63.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719185145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.108 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds