Wall clock time and date at job start Tue Mar 31 2020 02:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47006 * 2 1 4 4 C 1.52991 * 109.47219 * 120.00166 * 2 1 3 5 5 N 1.46506 * 109.47065 * 175.15991 * 4 2 1 6 6 C 1.46498 * 119.99774 * 275.85579 * 5 4 2 7 7 C 1.50705 * 109.46821 * 263.89169 * 6 5 4 8 8 H 1.07996 * 120.00044 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99828 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99676 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00185 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47172 * 89.99633 * 11 9 7 13 13 H 1.48502 * 109.46958 * 210.00043 * 11 9 7 14 14 H 1.48498 * 109.46928 * 329.99863 * 11 9 7 15 15 C 1.34774 * 120.00284 * 95.85276 * 5 4 2 16 16 O 1.21576 * 119.99610 * 4.28828 * 15 5 4 17 17 C 1.47727 * 120.00253 * 184.29291 * 15 5 4 18 18 C 1.41016 * 125.96407 * 174.24927 * 17 15 5 19 19 C 1.35816 * 107.77628 * 179.97438 * 18 17 15 20 20 N 1.39256 * 126.11339 * 180.02562 * 19 18 17 21 21 N 1.35953 * 107.77805 * 359.97438 * 19 18 17 22 22 C 1.46495 * 125.95929 * 180.26882 * 21 19 18 23 23 N 1.31867 * 125.95705 * 354.21927 * 17 15 5 24 24 H 1.09009 * 109.46749 * 299.99819 * 1 2 3 25 25 H 1.08993 * 109.47641 * 59.99642 * 1 2 3 26 26 H 1.08995 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46749 * 240.00465 * 2 1 3 28 28 H 1.08999 * 109.47227 * 185.33905 * 3 2 1 29 29 H 1.09005 * 109.47497 * 305.33610 * 3 2 1 30 30 H 1.09005 * 109.47198 * 65.33322 * 3 2 1 31 31 H 1.08997 * 109.47477 * 55.15938 * 4 2 1 32 32 H 1.09002 * 109.47594 * 295.15678 * 4 2 1 33 33 H 1.09007 * 109.47432 * 23.88624 * 6 5 4 34 34 H 1.08998 * 109.47454 * 143.89382 * 6 5 4 35 35 H 0.97006 * 119.99885 * 179.97438 * 10 9 7 36 36 H 1.08001 * 126.11502 * 359.97438 * 18 17 15 37 37 H 0.96997 * 119.99916 * 179.97438 * 20 19 18 38 38 H 0.96998 * 119.99648 * 359.97438 * 20 19 18 39 39 H 1.08995 * 109.47381 * 269.71744 * 22 21 19 40 40 H 1.09006 * 109.47313 * 29.71011 * 22 21 19 41 41 H 1.08997 * 109.47733 * 149.71037 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5004 -0.8230 1.1923 6 6 4.1300 -1.9191 0.4518 7 6 4.4725 -3.0364 1.4034 8 1 4.2444 -2.9395 2.4546 9 6 5.0780 -4.1821 0.9322 10 7 5.3773 -5.1568 1.7627 11 14 5.4731 -4.3495 -0.8859 12 1 6.8356 -3.8197 -1.1472 13 1 5.4157 -5.7815 -1.2750 14 1 4.4822 -3.5804 -1.6806 15 6 4.2647 0.0919 1.8210 16 8 3.7441 0.9559 2.4996 17 6 5.7350 0.0448 1.6856 18 6 6.6440 0.9977 2.1899 19 6 7.8968 0.5926 1.8566 20 7 9.0827 1.2534 2.1667 21 7 7.7862 -0.5739 1.1671 22 6 8.8961 -1.3600 0.6229 23 7 6.4264 -0.8958 1.0724 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1258 1.4440 -0.0956 29 1 1.6007 1.9832 -0.8384 30 1 1.7567 1.9280 0.9339 31 1 1.6076 -1.7208 1.2936 32 1 1.7493 -0.1598 2.1371 33 1 3.4406 -2.2876 -0.3079 34 1 5.0400 -1.5584 -0.0275 35 1 5.8030 -5.9630 1.4311 36 1 6.3896 1.8901 2.7425 37 1 9.9330 0.8824 1.8833 38 1 9.0585 2.0846 2.6660 39 1 9.1089 -1.0322 -0.3946 40 1 9.7811 -1.2171 1.2431 41 1 8.6245 -2.4156 0.6153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725138812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:04 Heat of formation + Delta-G solvation = 52.906038 kcal Electronic energy + Delta-G solvation = -23084.065413 eV Core-core repulsion = 19808.296611 eV Total energy + Delta-G solvation = -3275.768802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72491 -38.88034 -35.89363 -34.54519 -33.81200 -32.55940 -32.10349 -28.29011 -27.71766 -27.04464 -26.78339 -25.38404 -22.70337 -21.71716 -20.28041 -19.71851 -18.46518 -16.96769 -16.83197 -16.18881 -15.99632 -15.26083 -15.18734 -14.57334 -14.39936 -14.05889 -13.71527 -13.29440 -12.99585 -12.95756 -12.52814 -12.37644 -12.18363 -12.09357 -11.92949 -11.78282 -11.41162 -10.97379 -10.82423 -10.70766 -10.61751 -10.49350 -10.20180 -10.08346 -9.71740 -9.38757 -9.20816 -8.51679 -8.44756 -7.59282 -7.37861 -6.00930 -3.96234 2.22121 2.72103 2.89221 3.28820 3.35325 3.38519 3.72396 4.12480 4.23968 4.44922 4.83105 5.23474 5.28734 5.32342 5.34003 5.38644 5.47941 5.67226 5.87186 5.89169 5.94870 6.01920 6.08763 6.17742 6.28940 6.33577 6.36446 6.40916 6.62325 6.69074 6.73188 6.74609 6.89210 7.21093 7.50678 7.60899 7.68563 7.79485 8.19269 8.31806 8.59802 9.00812 9.07144 9.60868 11.12818 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.008829 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.063537 B = 3170.505958 C = 4941.694051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.137 4.137 4 C 0.122 3.878 5 N -0.577 5.577 6 C 0.198 3.802 7 C -0.507 4.507 8 H 0.072 0.928 9 C 0.078 3.922 10 N -0.902 5.902 11 Si 0.872 3.128 12 H -0.275 1.275 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.601 3.399 16 O -0.559 6.559 17 C 0.058 3.942 18 C -0.294 4.294 19 C 0.341 3.659 20 N -0.861 5.861 21 N -0.400 5.400 22 C 0.104 3.896 23 N -0.202 5.202 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.028 0.972 34 H 0.061 0.939 35 H 0.261 0.739 36 H 0.146 0.854 37 H 0.395 0.605 38 H 0.413 0.587 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 11.171 -4.297 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.195 4.195 4 C -0.002 4.002 5 N -0.306 5.306 6 C 0.077 3.923 7 C -0.546 4.546 8 H 0.090 0.910 9 C -0.123 4.123 10 N -0.542 5.542 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.387 3.613 16 O -0.437 6.437 17 C -0.110 4.110 18 C -0.329 4.329 19 C 0.117 3.883 20 N -0.412 5.412 21 N -0.191 5.191 22 C -0.038 4.038 23 N -0.027 5.027 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.164 0.836 37 H 0.223 0.777 38 H 0.243 0.757 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.845 10.216 -4.660 11.869 hybrid contribution 0.999 0.376 -0.411 1.144 sum 4.844 10.593 -5.072 12.704 Atomic orbital electron populations 1.21744 0.95048 1.01645 1.01453 1.21525 0.95456 0.96981 0.99386 1.21754 1.01010 0.95544 1.01165 1.21467 0.80167 1.00856 0.97676 1.47794 1.05657 1.26513 1.50597 1.20216 0.94031 0.85366 0.92689 1.21222 1.38722 0.98767 0.95859 0.90985 1.24723 0.95058 0.95540 0.97015 1.69915 1.42910 1.06874 1.34464 0.86921 0.79512 0.76910 0.86648 1.20123 1.21632 1.19191 1.16965 0.83887 0.81147 0.79294 1.90674 1.73461 1.38128 1.41463 1.21729 0.94513 0.94251 1.00538 1.20303 0.88467 1.06196 1.17972 1.17949 0.88423 0.86979 0.94912 1.41402 1.03736 1.29092 1.66970 1.48956 1.06841 1.17481 1.45777 1.21707 0.85897 0.97923 0.98311 1.78560 0.83609 1.18740 1.21816 0.92661 0.92955 0.92600 0.91204 0.93054 0.93743 0.92239 0.90384 0.90148 0.95427 0.92147 0.92915 0.83589 0.77721 0.75665 0.91439 0.90680 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 2 C -0.11 -1.81 3.12 -90.63 -0.28 -2.09 16 3 C -0.14 -2.18 8.17 37.16 0.30 -1.88 16 4 C 0.12 2.30 4.94 -4.04 -0.02 2.28 16 5 N -0.58 -12.78 2.27 -176.21 -0.40 -13.18 16 6 C 0.20 4.78 3.85 -5.19 -0.02 4.76 16 7 C -0.51 -14.17 9.04 -34.44 -0.31 -14.48 16 8 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 10 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 11 Si 0.87 21.07 27.47 -169.99 -4.67 16.40 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 15 C 0.60 13.72 6.30 -12.38 -0.08 13.64 16 16 O -0.56 -13.08 15.76 5.30 0.08 -13.00 16 17 C 0.06 1.29 6.79 -82.92 -0.56 0.73 16 18 C -0.29 -5.52 10.61 -39.40 -0.42 -5.93 16 19 C 0.34 5.47 7.97 -152.85 -1.22 4.26 16 20 N -0.86 -8.96 9.11 31.18 0.28 -8.68 16 21 N -0.40 -7.20 4.04 -67.14 -0.27 -7.47 16 22 C 0.10 1.41 11.28 59.84 0.68 2.09 16 23 N -0.20 -4.50 8.38 33.34 0.28 -4.22 16 24 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.91 7.01 -51.93 -0.36 0.55 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 31 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 32 H 0.08 1.53 7.20 -51.93 -0.37 1.16 16 33 H 0.03 0.65 7.08 -51.93 -0.37 0.29 16 34 H 0.06 1.49 4.70 -51.93 -0.24 1.24 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.15 2.51 8.06 -52.49 -0.42 2.09 16 37 H 0.39 3.13 8.09 -40.82 -0.33 2.80 16 38 H 0.41 3.38 8.95 -40.82 -0.37 3.01 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.74 7.49 -51.93 -0.39 0.35 16 41 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -34.18 336.66 -6.78 -40.96 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.25 Total: 6.61 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.69 Total: 3.99 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.67 Total: -60.04 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.18 -6.78 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725138812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.868 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds