Wall clock time and date at job start Tue Mar 31 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47006 * 2 1 4 4 C 1.52991 * 109.47219 * 120.00166 * 2 1 3 5 5 N 1.46506 * 109.47065 * 175.15991 * 4 2 1 6 6 C 1.46498 * 119.99774 * 275.85579 * 5 4 2 7 7 C 1.50705 * 109.46821 * 263.89169 * 6 5 4 8 8 H 1.07996 * 120.00044 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99828 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99676 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00185 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47172 * 89.99633 * 11 9 7 13 13 H 1.48502 * 109.46958 * 210.00043 * 11 9 7 14 14 H 1.48498 * 109.46928 * 329.99863 * 11 9 7 15 15 C 1.34774 * 120.00284 * 95.85276 * 5 4 2 16 16 O 1.21576 * 119.99610 * 4.28828 * 15 5 4 17 17 C 1.47727 * 120.00253 * 184.29291 * 15 5 4 18 18 C 1.41016 * 125.96407 * 174.24927 * 17 15 5 19 19 C 1.35816 * 107.77628 * 179.97438 * 18 17 15 20 20 N 1.39256 * 126.11339 * 180.02562 * 19 18 17 21 21 N 1.35953 * 107.77805 * 359.97438 * 19 18 17 22 22 C 1.46495 * 125.95929 * 180.26882 * 21 19 18 23 23 N 1.31867 * 125.95705 * 354.21927 * 17 15 5 24 24 H 1.09009 * 109.46749 * 299.99819 * 1 2 3 25 25 H 1.08993 * 109.47641 * 59.99642 * 1 2 3 26 26 H 1.08995 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46749 * 240.00465 * 2 1 3 28 28 H 1.08999 * 109.47227 * 185.33905 * 3 2 1 29 29 H 1.09005 * 109.47497 * 305.33610 * 3 2 1 30 30 H 1.09005 * 109.47198 * 65.33322 * 3 2 1 31 31 H 1.08997 * 109.47477 * 55.15938 * 4 2 1 32 32 H 1.09002 * 109.47594 * 295.15678 * 4 2 1 33 33 H 1.09007 * 109.47432 * 23.88624 * 6 5 4 34 34 H 1.08998 * 109.47454 * 143.89382 * 6 5 4 35 35 H 0.97006 * 119.99885 * 179.97438 * 10 9 7 36 36 H 1.08001 * 126.11502 * 359.97438 * 18 17 15 37 37 H 0.96997 * 119.99916 * 179.97438 * 20 19 18 38 38 H 0.96998 * 119.99648 * 359.97438 * 20 19 18 39 39 H 1.08995 * 109.47381 * 269.71744 * 22 21 19 40 40 H 1.09006 * 109.47313 * 29.71011 * 22 21 19 41 41 H 1.08997 * 109.47733 * 149.71037 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5004 -0.8230 1.1923 6 6 4.1300 -1.9191 0.4518 7 6 4.4725 -3.0364 1.4034 8 1 4.2444 -2.9395 2.4546 9 6 5.0780 -4.1821 0.9322 10 7 5.3773 -5.1568 1.7627 11 14 5.4731 -4.3495 -0.8859 12 1 6.8356 -3.8197 -1.1472 13 1 5.4157 -5.7815 -1.2750 14 1 4.4822 -3.5804 -1.6806 15 6 4.2647 0.0919 1.8210 16 8 3.7441 0.9559 2.4996 17 6 5.7350 0.0448 1.6856 18 6 6.6440 0.9977 2.1899 19 6 7.8968 0.5926 1.8566 20 7 9.0827 1.2534 2.1667 21 7 7.7862 -0.5739 1.1671 22 6 8.8961 -1.3600 0.6229 23 7 6.4264 -0.8958 1.0724 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1258 1.4440 -0.0956 29 1 1.6007 1.9832 -0.8384 30 1 1.7567 1.9280 0.9339 31 1 1.6076 -1.7208 1.2936 32 1 1.7493 -0.1598 2.1371 33 1 3.4406 -2.2876 -0.3079 34 1 5.0400 -1.5584 -0.0275 35 1 5.8030 -5.9630 1.4311 36 1 6.3896 1.8901 2.7425 37 1 9.9330 0.8824 1.8833 38 1 9.0585 2.0846 2.6660 39 1 9.1089 -1.0322 -0.3946 40 1 9.7811 -1.2171 1.2431 41 1 8.6245 -2.4156 0.6153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725138812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:02 Heat of formation + Delta-G solvation = 29.092873 kcal Electronic energy + Delta-G solvation = -23085.098029 eV Core-core repulsion = 19808.296611 eV Total energy + Delta-G solvation = -3276.801418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16963 -40.52976 -37.46231 -35.97864 -35.25186 -34.18460 -33.80436 -30.00498 -29.31752 -28.46296 -27.96809 -26.78260 -24.64097 -23.30170 -21.57805 -21.06334 -20.00145 -19.00036 -18.41355 -17.62723 -17.20304 -16.80771 -16.70481 -16.18704 -15.89463 -15.61156 -15.24815 -14.84954 -14.47894 -14.37991 -14.16239 -13.85829 -13.58609 -13.53476 -13.29866 -13.11758 -12.79819 -12.63586 -12.50302 -12.31688 -11.93240 -11.89537 -11.78949 -11.69047 -11.52229 -11.24274 -10.95219 -10.62425 -9.87462 -9.35248 -8.66083 -8.20535 -6.21458 0.63632 1.37902 1.39810 1.44125 1.49842 1.51137 2.23580 2.40667 2.57451 2.93053 3.15924 3.51383 3.86643 3.99418 4.07545 4.20439 4.38939 4.48980 4.56432 4.65333 4.66375 4.72344 4.76721 4.86196 4.88147 4.93852 5.00718 5.08201 5.12995 5.22380 5.42804 5.47505 5.53541 5.56673 5.69043 5.85977 6.25038 6.42075 6.59496 6.64739 6.77600 7.07760 7.29199 7.41434 8.97129 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.008829 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.063537 B = 3170.505958 C = 4941.694051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.130 4.130 4 C 0.115 3.885 5 N -0.582 5.582 6 C 0.213 3.787 7 C -0.503 4.503 8 H 0.016 0.984 9 C 0.026 3.974 10 N -0.951 5.951 11 Si 0.938 3.062 12 H -0.259 1.259 13 H -0.288 1.288 14 H -0.248 1.248 15 C 0.593 3.407 16 O -0.575 6.575 17 C 0.030 3.970 18 C -0.319 4.319 19 C 0.365 3.635 20 N -0.832 5.832 21 N -0.402 5.402 22 C 0.093 3.907 23 N -0.250 5.250 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.264 0.736 36 H 0.154 0.846 37 H 0.413 0.587 38 H 0.427 0.573 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 12.465 -6.387 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.187 4.187 4 C -0.007 4.007 5 N -0.310 5.310 6 C 0.090 3.910 7 C -0.542 4.542 8 H 0.035 0.965 9 C -0.171 4.171 10 N -0.592 5.592 11 Si 0.761 3.239 12 H -0.184 1.184 13 H -0.214 1.214 14 H -0.172 1.172 15 C 0.380 3.620 16 O -0.455 6.455 17 C -0.137 4.137 18 C -0.354 4.354 19 C 0.138 3.862 20 N -0.385 5.385 21 N -0.193 5.193 22 C -0.047 4.047 23 N -0.077 5.077 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.171 0.829 37 H 0.244 0.756 38 H 0.260 0.740 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.162 11.542 -6.748 14.332 hybrid contribution 0.710 0.015 0.379 0.805 sum 5.872 11.557 -6.370 14.444 Atomic orbital electron populations 1.21705 0.92287 1.02469 1.02763 1.21480 0.97643 0.96372 0.97204 1.21681 0.99460 0.95775 1.01829 1.21685 0.78656 1.01051 0.99317 1.47857 1.06909 1.25916 1.50367 1.19945 0.94554 0.84574 0.91887 1.21226 1.38664 1.00444 0.93879 0.96521 1.25542 0.94594 0.94790 1.02187 1.70074 1.44305 1.07735 1.37115 0.85872 0.80477 0.77161 0.80377 1.18374 1.21361 1.17219 1.17278 0.84751 0.81000 0.78964 1.90632 1.74041 1.38721 1.42097 1.21812 0.94313 0.95591 1.01942 1.20456 0.89149 1.06499 1.19322 1.17946 0.89403 0.86038 0.92772 1.41379 1.02530 1.28890 1.65739 1.49149 1.06286 1.18241 1.45670 1.22087 0.85721 0.96164 1.00750 1.78343 0.85876 1.19867 1.23584 0.92208 0.90776 0.92075 0.91487 0.95576 0.90956 0.93159 0.90795 0.90865 0.94537 0.91683 0.92726 0.82854 0.75633 0.73963 0.88827 0.86530 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.19 71.98 0.66 -2.52 16 2 C -0.11 -3.33 3.12 -10.80 -0.03 -3.37 16 3 C -0.13 -4.04 8.17 71.98 0.59 -3.45 16 4 C 0.12 4.46 4.94 86.38 0.43 4.89 16 5 N -0.58 -26.66 2.27 -829.69 -1.88 -28.54 16 6 C 0.21 10.40 3.85 85.63 0.33 10.73 16 7 C -0.50 -29.24 9.04 25.60 0.23 -29.01 16 8 H 0.02 1.12 8.06 -2.91 -0.02 1.09 16 9 C 0.03 1.49 5.47 84.66 0.46 1.96 16 10 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 11 Si 0.94 43.20 27.47 68.60 1.88 45.09 16 12 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 14 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 15 C 0.59 28.12 6.30 86.75 0.55 28.67 16 16 O -0.58 -27.95 15.76 -3.96 -0.06 -28.01 16 17 C 0.03 1.37 6.79 42.33 0.29 1.65 16 18 C -0.32 -11.88 10.61 22.39 0.24 -11.64 16 19 C 0.37 11.03 7.97 131.11 1.05 12.07 16 20 N -0.83 -14.29 9.11 -55.27 -0.50 -14.80 16 21 N -0.40 -13.89 4.04 -366.34 -1.48 -15.37 16 22 C 0.09 2.29 11.28 127.77 1.44 3.74 16 23 N -0.25 -11.23 8.38 -48.45 -0.41 -11.64 16 24 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.03 0.92 7.01 -2.39 -0.02 0.90 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.05 1.63 8.11 -2.38 -0.02 1.61 16 31 H 0.07 2.86 8.11 -2.39 -0.02 2.84 16 32 H 0.07 2.90 7.20 -2.39 -0.02 2.89 16 33 H 0.04 1.71 7.08 -2.38 -0.02 1.70 16 34 H 0.07 3.21 4.70 -2.39 -0.01 3.20 16 35 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 36 H 0.15 5.27 8.06 -2.91 -0.02 5.25 16 37 H 0.41 4.63 8.09 -92.71 -0.75 3.88 16 38 H 0.43 5.43 8.95 -92.71 -0.83 4.60 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.12 1.84 7.49 -2.38 -0.02 1.82 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -78.49 336.66 3.49 -75.00 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.59 Total: 23.49 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.23 Total: 13.72 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -3.97 Total: -129.29 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.06 Total: -28.01 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Total: -78.49 3.49 -75.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725138812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.095 kcal (2) G-P(sol) polarization free energy of solvation -78.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds