Wall clock time and date at job start Tue Mar 31 2020 01:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35311 * 126.12914 * 85.00127 * 3 2 1 5 5 C 1.39868 * 107.92268 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.89832 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46503 * 95.00900 * 6 5 4 8 8 C 1.34780 * 119.99694 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99930 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99790 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99442 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47412 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47378 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00149 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00312 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99744 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47194 * 90.00131 * 18 16 14 20 20 H 1.48503 * 109.47245 * 209.99873 * 18 16 14 21 21 H 1.48501 * 109.47552 * 329.99730 * 18 16 14 22 22 N 1.30838 * 108.20045 * 0.02562 * 5 4 3 23 23 N 1.34949 * 126.12555 * 264.68786 * 3 2 1 24 24 H 0.97005 * 126.03781 * 0.04587 * 23 3 2 25 25 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.08000 * 126.03504 * 359.94205 * 4 3 2 31 31 H 1.09001 * 109.47004 * 215.00123 * 6 5 4 32 32 H 1.08993 * 109.47159 * 335.00714 * 6 5 4 33 33 H 0.96998 * 120.00288 * 359.97438 * 7 6 5 34 34 H 0.96998 * 120.00192 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47239 * 299.99485 * 11 10 8 36 36 H 1.08996 * 109.47788 * 60.00056 * 11 10 8 37 37 H 1.09011 * 109.47078 * 299.99916 * 12 11 10 38 38 H 1.08997 * 109.47427 * 59.98942 * 12 11 10 39 39 H 1.08998 * 109.46880 * 299.99569 * 13 12 11 40 40 H 1.09000 * 109.47133 * 59.99710 * 13 12 11 41 41 H 0.96998 * 119.99915 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2084 2.2048 1.0887 5 6 2.6877 3.4446 0.6534 6 6 3.0217 4.6214 1.5336 7 7 4.4538 4.6093 1.8423 8 6 4.9835 5.5736 2.6208 9 8 4.2729 6.4537 3.0666 10 7 6.3009 5.5621 2.9052 11 6 6.8765 6.6100 3.7519 12 6 8.3779 6.3654 3.9163 13 6 8.9790 7.4593 4.8011 14 6 10.4576 7.2180 4.9635 15 1 10.9222 6.3690 4.4840 16 6 11.2174 8.0811 5.7243 17 7 10.6520 9.1152 6.3078 18 14 13.0505 7.7823 5.9250 19 1 13.7876 8.4828 4.8428 20 1 13.4952 8.3017 7.2433 21 1 13.3259 6.3251 5.8487 22 7 2.7950 3.4065 -0.6500 23 7 2.3926 2.1373 -1.0853 24 1 2.3736 1.8289 -2.0049 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0129 1.9231 2.1128 31 1 2.7697 5.5463 1.0148 32 1 2.4499 4.5566 2.4593 33 1 5.0206 3.9069 1.4870 34 1 6.8677 4.8598 2.5499 35 1 6.7161 7.5824 3.2863 36 1 6.3958 6.5918 4.7300 37 1 8.5388 5.3929 4.3818 38 1 8.8583 6.3838 2.9381 39 1 8.8181 8.4319 4.3361 40 1 8.4985 7.4403 5.7793 41 1 11.1866 9.7225 6.8427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736662002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:04 Heat of formation + Delta-G solvation = 16.752590 kcal Electronic energy + Delta-G solvation = -20322.018896 eV Core-core repulsion = 17044.682363 eV Total energy + Delta-G solvation = -3277.336533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72334 -39.66787 -35.79935 -35.00178 -34.21812 -33.25370 -31.86495 -30.90298 -29.46780 -27.45044 -25.95067 -24.32340 -22.95178 -20.84250 -20.77692 -20.43040 -20.30034 -17.99754 -17.77251 -16.54017 -16.00298 -15.57655 -15.22267 -14.91857 -14.64088 -14.48882 -14.21979 -14.10760 -13.86475 -13.74766 -13.03929 -12.88785 -12.76847 -12.24534 -12.03381 -11.76178 -11.69241 -11.62181 -10.96418 -10.87290 -10.67490 -10.56138 -10.18918 -9.80971 -9.78455 -9.38899 -9.15179 -9.08639 -9.02320 -8.53027 -8.33777 -5.98459 -4.01342 1.39636 2.14941 2.40944 3.13246 3.33077 3.39331 3.42220 3.44326 4.02692 4.24310 4.38893 4.45474 4.53426 4.67145 4.80199 5.04288 5.16415 5.29967 5.32226 5.37198 5.46003 5.53928 5.60775 5.77870 5.80423 5.88006 6.19113 6.24673 6.44673 6.59592 6.68391 6.84709 6.86969 7.07758 7.13914 7.26825 7.68009 7.81386 8.00837 8.21340 8.41875 8.81625 9.05389 9.62531 11.12801 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038945 B = 0.002122 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.788684 B =13190.468325 C =13536.204855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 C 0.088 3.912 4 C -0.253 4.253 5 C 0.063 3.937 6 C 0.223 3.777 7 N -0.746 5.746 8 C 0.703 3.297 9 O -0.593 6.593 10 N -0.741 5.741 11 C 0.135 3.865 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.274 5.274 23 N -0.471 5.471 24 H 0.438 0.562 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.888 -20.449 -14.577 32.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.041 4.041 4 C -0.283 4.283 5 C -0.104 4.104 6 C 0.096 3.904 7 N -0.403 5.403 8 C 0.402 3.598 9 O -0.471 6.471 10 N -0.395 5.395 11 C 0.012 3.988 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.097 5.097 23 N -0.180 5.180 24 H 0.282 0.718 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.229 0.771 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.187 -18.780 -15.045 31.409 hybrid contribution 1.336 -1.407 -0.043 1.940 sum -18.851 -20.186 -15.088 31.472 Atomic orbital electron populations 1.21761 0.93730 1.02407 1.02742 1.20252 0.96707 0.89116 1.04135 1.21149 0.99561 0.95603 0.87772 1.21193 1.13617 0.93875 0.99579 1.22279 1.00189 0.96321 0.91616 1.19282 0.81227 0.93422 0.96422 1.45012 1.09221 1.30512 1.55574 1.15940 0.82597 0.81948 0.79282 1.90923 1.60177 1.38298 1.57671 1.45366 1.06819 1.31939 1.55394 1.21511 0.94596 0.89289 0.93406 1.21891 0.91217 1.01628 1.01117 1.19032 0.95217 0.92840 0.94343 1.21211 0.93452 1.10680 1.30656 0.92672 1.25033 0.98572 0.95210 0.95701 1.69967 1.35809 1.14509 1.32954 0.86583 0.85540 0.78369 0.77416 1.20699 1.21227 1.19934 1.77391 1.21414 0.98290 1.12655 1.46357 1.52738 1.10113 1.08804 0.71840 0.92662 0.91623 0.91743 0.88865 0.90608 0.83205 0.90135 0.89478 0.77068 0.77323 0.91933 0.91900 0.92782 0.92793 0.96214 0.96202 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.89 37.16 0.37 -0.13 16 2 C -0.06 -0.23 6.48 -27.88 -0.18 -0.41 16 3 C 0.09 0.59 6.46 -82.26 -0.53 0.06 16 4 C -0.25 -2.10 10.65 -40.01 -0.43 -2.53 16 5 C 0.06 0.64 6.59 -82.40 -0.54 0.09 16 6 C 0.22 2.49 6.23 -5.19 -0.03 2.46 16 7 N -0.75 -8.96 5.55 -66.41 -0.37 -9.33 16 8 C 0.70 11.22 8.57 -86.91 -0.74 10.48 16 9 O -0.59 -11.91 16.34 5.29 0.09 -11.83 16 10 N -0.74 -11.23 5.56 -65.22 -0.36 -11.59 16 11 C 0.14 2.48 5.67 -4.04 -0.02 2.45 16 12 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 13 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 N -0.27 -2.93 12.70 33.67 0.43 -2.50 16 23 N -0.47 -3.50 7.36 33.48 0.25 -3.25 16 24 H 0.44 1.96 8.96 -182.61 -1.64 0.32 16 25 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.40 3.94 8.48 -40.82 -0.35 3.59 16 34 H 0.39 4.82 8.49 -40.82 -0.35 4.47 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -35.07 352.89 -9.53 -44.60 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.79 Total: 1.36 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.80 Total: -3.13 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.68 Total: -52.98 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.07 -9.53 -44.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736662002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.356 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds