Wall clock time and date at job start Tue Mar 31 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34946 * 126.04261 * 2 1 4 4 C 1.35315 * 107.74887 * 180.15181 * 3 2 1 5 5 C 1.50699 * 126.04126 * 179.87506 * 4 3 2 6 6 C 1.52997 * 109.47078 * 299.71466 * 5 4 3 7 7 C 1.53006 * 109.46866 * 59.71289 * 5 4 3 8 8 N 1.46894 * 109.46922 * 179.71135 * 5 4 3 9 9 C 1.46902 * 110.99995 * 180.02562 * 8 5 4 10 10 C 1.50703 * 109.47407 * 180.02562 * 9 8 5 11 11 O 1.21280 * 120.00053 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99646 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99451 * 180.02562 * 12 10 9 14 14 C 1.50692 * 109.46735 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00714 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99652 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00174 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99981 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46968 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47326 * 119.99625 * 18 16 14 21 21 H 1.48499 * 109.47378 * 240.00050 * 18 16 14 22 22 C 1.39872 * 107.91599 * 359.60825 * 4 3 2 23 23 N 1.30837 * 108.20499 * 0.24515 * 22 4 3 24 24 H 1.08998 * 109.47157 * 270.31004 * 1 2 3 25 25 H 1.09003 * 109.47278 * 30.30454 * 1 2 3 26 26 H 1.08993 * 109.47691 * 150.30806 * 1 2 3 27 27 H 1.08005 * 126.12512 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 31 31 H 1.08993 * 109.46955 * 300.00219 * 7 5 4 32 32 H 1.09000 * 109.47050 * 60.00048 * 7 5 4 33 33 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 34 34 H 1.00900 * 111.00051 * 56.04970 * 8 5 4 35 35 H 1.09001 * 109.46887 * 300.00344 * 9 8 5 36 36 H 1.09000 * 109.47281 * 60.00068 * 9 8 5 37 37 H 0.96995 * 120.00280 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.46660 * 300.00196 * 13 12 10 39 39 H 1.09000 * 109.47107 * 59.99741 * 13 12 10 40 40 H 0.97002 * 120.00270 * 180.02562 * 17 16 14 41 41 H 1.08000 * 125.89488 * 180.26034 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5437 0.6664 -0.0034 5 6 4.7681 1.5451 -0.0073 6 6 4.7620 2.4227 -1.2606 7 6 4.7617 2.4341 1.2379 8 7 5.9733 0.7053 -0.0033 9 6 7.1893 1.5297 -0.0064 10 6 8.4024 0.6356 -0.0028 11 8 8.2674 -0.5697 0.0014 12 7 9.6374 1.1754 -0.0042 13 6 10.8167 0.3062 -0.0013 14 6 12.0639 1.1519 -0.0030 15 1 11.9861 2.2290 -0.0056 16 6 13.3046 0.5504 -0.0013 17 7 13.3995 -0.7613 0.0013 18 14 14.8508 1.5986 -0.0042 19 1 14.4748 3.0353 -0.0075 20 1 15.6533 1.3004 1.2092 21 1 15.6534 1.2937 -1.2158 22 6 3.5345 -0.7323 0.0035 23 7 2.2890 -1.1328 0.0055 24 1 -0.3633 0.0056 1.0276 25 1 -0.3634 0.8873 -0.5186 26 1 -0.3634 -0.8926 -0.5090 27 1 1.9282 2.1193 0.0004 28 1 4.7665 1.7893 -2.1477 29 1 5.6473 3.0585 -1.2631 30 1 3.8676 3.0457 -1.2635 31 1 3.8674 3.0571 1.2350 32 1 4.7660 1.8089 2.1308 33 1 5.6475 3.0693 1.2354 34 1 5.9694 0.0634 -0.7818 35 1 7.2019 2.1551 -0.8990 36 1 7.2014 2.1626 0.8809 37 1 9.7453 2.1393 -0.0079 38 1 10.8040 -0.3202 0.8906 39 1 10.8045 -0.3258 -0.8893 40 1 14.2724 -1.1844 0.0029 41 1 4.4053 -1.3712 0.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754873242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:18 Heat of formation + Delta-G solvation = 15.714752 kcal Electronic energy + Delta-G solvation = -21437.201544 eV Core-core repulsion = 18159.820007 eV Total energy + Delta-G solvation = -3277.381537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20393 -40.52307 -38.43550 -36.07414 -34.31985 -33.97530 -32.78661 -30.09796 -29.52508 -28.12344 -27.86889 -26.73850 -24.42555 -22.59924 -21.79498 -21.25135 -19.92363 -19.15730 -18.12810 -17.20338 -17.09371 -16.66086 -16.29038 -16.16679 -15.58913 -15.32006 -15.21027 -14.92446 -14.32779 -14.25932 -13.96023 -13.80571 -13.74386 -13.53281 -13.35788 -13.27628 -12.88667 -12.74985 -12.57998 -12.37108 -12.24670 -12.19275 -12.03904 -11.43530 -11.29188 -10.79851 -10.67233 -10.30403 -9.78027 -9.40238 -9.11275 -8.27441 -6.43904 1.01024 1.44282 1.45632 1.59070 1.76333 1.85656 1.89145 2.32118 2.54149 3.07471 3.32963 3.68508 4.01986 4.06087 4.14151 4.28931 4.33484 4.42371 4.45300 4.47784 4.52723 4.72365 4.79618 4.86063 4.91364 5.05877 5.09558 5.15371 5.20939 5.27322 5.32272 5.50181 5.52383 5.71537 5.73586 5.87676 6.12340 6.25630 6.42476 6.68237 6.80373 7.00035 7.25855 7.58233 8.85071 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.045693 B = 0.002780 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.634458 B =10071.296566 C =10480.228213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.381 5.381 3 C 0.070 3.930 4 C -0.235 4.235 5 C 0.193 3.807 6 C -0.174 4.174 7 C -0.135 4.135 8 N -0.677 5.677 9 C 0.055 3.945 10 C 0.491 3.509 11 O -0.593 6.593 12 N -0.710 5.710 13 C 0.267 3.733 14 C -0.553 4.553 15 H 0.086 0.914 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.251 1.251 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.049 3.951 23 N -0.343 5.343 24 H 0.084 0.916 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.212 0.788 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.342 0.658 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.409 0.591 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.268 0.732 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.814 13.257 -1.058 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.163 5.163 3 C -0.077 4.077 4 C -0.246 4.246 5 C 0.101 3.899 6 C -0.233 4.233 7 C -0.193 4.193 8 N -0.309 5.309 9 C -0.077 4.077 10 C 0.279 3.721 11 O -0.474 6.474 12 N -0.361 5.361 13 C 0.144 3.856 14 C -0.591 4.591 15 H 0.104 0.896 16 C -0.199 4.199 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.174 1.174 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.136 4.136 23 N -0.165 5.165 24 H 0.102 0.898 25 H 0.137 0.863 26 H 0.103 0.897 27 H 0.228 0.772 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.244 0.756 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.077 0.923 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -26.758 11.157 -0.364 28.993 hybrid contribution 1.742 0.705 -0.852 2.063 sum -25.017 11.862 -1.216 27.713 Atomic orbital electron populations 1.22177 0.72063 1.05895 1.04501 1.48818 1.07889 1.03383 1.56256 1.22667 0.89761 0.94503 1.00781 1.19993 0.94645 0.93061 1.16937 1.19148 0.85052 0.89876 0.95778 1.22550 1.03703 1.00159 0.96933 1.21932 1.03044 0.98414 0.95898 1.60226 1.00226 1.19053 1.51441 1.21835 0.86692 0.94370 1.04822 1.21514 0.85661 0.89319 0.75640 1.90639 1.87136 1.17749 1.51838 1.46168 1.05573 1.11066 1.73258 1.18501 0.83085 0.90155 0.93863 1.21664 0.90660 0.94223 1.52531 0.89645 1.26103 1.03455 0.96351 0.93962 1.70152 1.25864 1.10927 1.50180 0.85097 0.77351 0.79070 0.77597 1.17438 1.20570 1.20524 1.23800 0.94640 0.95980 0.99208 1.77321 1.02414 1.10113 1.26681 0.89758 0.86279 0.89664 0.77183 0.93705 0.91302 0.89855 0.89923 0.93696 0.91477 0.83920 0.89528 0.85951 0.75579 0.99806 0.99656 0.92319 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.47 127.77 1.47 2.27 16 2 N -0.38 -7.08 4.01 -369.57 -1.48 -8.56 16 3 C 0.07 1.10 10.80 83.54 0.90 2.00 16 4 C -0.23 -4.99 4.77 -20.14 -0.10 -5.09 16 5 C 0.19 3.73 0.87 2.78 0.00 3.73 16 6 C -0.17 -2.62 8.11 71.98 0.58 -2.03 16 7 C -0.14 -2.20 8.11 71.98 0.58 -1.62 16 8 N -0.68 -18.17 5.18 -477.87 -2.48 -20.64 16 9 C 0.05 1.43 5.38 85.56 0.46 1.89 16 10 C 0.49 19.72 7.87 87.66 0.69 20.41 16 11 O -0.59 -30.01 16.20 -3.03 -0.05 -30.06 16 12 N -0.71 -29.98 5.55 -466.78 -2.59 -32.57 16 13 C 0.27 14.88 5.43 85.63 0.46 15.34 16 14 C -0.55 -30.24 9.28 25.60 0.24 -30.00 16 15 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 18 Si 0.99 42.52 29.54 68.60 2.03 44.55 16 19 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 22 C 0.05 1.33 11.10 85.24 0.95 2.28 16 23 N -0.34 -9.35 12.58 -57.02 -0.72 -10.07 16 24 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.94 6.41 -2.39 -0.02 0.93 16 30 H 0.08 0.85 8.01 -2.38 -0.02 0.84 16 31 H 0.08 0.89 8.00 -2.39 -0.02 0.87 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.98 6.40 -2.39 -0.02 0.96 16 34 H 0.34 10.21 7.81 -89.69 -0.70 9.51 16 35 H 0.09 1.81 6.30 -2.39 -0.02 1.79 16 36 H 0.12 2.69 6.30 -2.39 -0.02 2.68 16 37 H 0.41 13.93 8.32 -92.71 -0.77 13.16 16 38 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 41 H 0.17 5.03 7.62 -2.91 -0.02 5.01 16 Total: -1.00 -80.35 342.44 1.27 -79.07 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.42 Total: 25.35 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.70 Total: 9.68 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -6.98 Total: -128.59 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -80.35 1.27 -79.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754873242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.786 kcal (2) G-P(sol) polarization free energy of solvation -80.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds