Wall clock time and date at job start Tue Mar 31 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46914 * 2 1 4 4 N 1.46494 * 109.46810 * 119.99938 * 2 1 3 5 5 N 1.39898 * 125.75068 * 299.99434 * 4 2 1 6 6 C 1.30286 * 109.23308 * 180.02562 * 5 4 2 7 7 C 1.41485 * 108.18969 * 0.02562 * 6 5 4 8 8 C 1.46774 * 126.51681 * 180.25907 * 7 6 5 9 9 O 1.21687 * 119.99927 * 179.68559 * 8 7 6 10 10 N 1.34777 * 120.00095 * 359.68718 * 8 7 6 11 11 C 1.46502 * 120.00041 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46851 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46560 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46846 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00169 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00106 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99750 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99692 * 0.02562 * 16 14 13 19 19 H 1.48489 * 109.47182 * 89.99624 * 18 16 14 20 20 H 1.48508 * 109.46541 * 209.99731 * 18 16 14 21 21 H 1.48498 * 109.47035 * 329.99432 * 18 16 14 22 22 C 1.34847 * 125.74466 * 120.00185 * 4 2 1 23 23 N 1.38010 * 126.44568 * 0.02562 * 22 4 2 24 24 H 1.08999 * 109.46968 * 300.00173 * 1 2 3 25 25 H 1.09004 * 109.47415 * 59.99732 * 1 2 3 26 26 H 1.08994 * 109.47343 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46968 * 239.99827 * 2 1 3 28 28 H 1.08999 * 109.47444 * 60.00119 * 3 2 1 29 29 H 1.08999 * 109.46690 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47046 * 299.99886 * 3 2 1 31 31 H 1.08003 * 125.90317 * 180.02562 * 6 5 4 32 32 H 0.96994 * 119.99713 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47167 * 299.99926 * 11 10 8 34 34 H 1.09000 * 109.46805 * 60.00052 * 11 10 8 35 35 H 1.08996 * 109.47362 * 300.00036 * 12 11 10 36 36 H 1.09000 * 109.47186 * 60.00514 * 12 11 10 37 37 H 1.08996 * 109.47202 * 299.99998 * 13 12 11 38 38 H 1.08998 * 109.47424 * 60.00693 * 13 12 11 39 39 H 0.96999 * 119.99787 * 179.97438 * 17 16 14 40 40 H 0.97008 * 120.00057 * 180.02562 * 23 22 4 41 41 H 0.97001 * 120.00369 * 0.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.7555 -0.3189 2.5190 6 6 2.3469 -1.1544 3.3251 7 6 3.0280 -2.1162 2.5423 8 6 3.8211 -3.2458 3.0417 9 8 4.3548 -4.0082 2.2578 10 7 3.9582 -3.4385 4.3686 11 6 4.7494 -4.5663 4.8670 12 6 4.7450 -4.5556 6.3970 13 6 5.5718 -5.7330 6.9175 14 6 5.5670 -5.7229 8.4245 15 1 5.0278 -4.9538 8.9577 16 6 6.2501 -6.6961 9.1227 17 7 6.2463 -6.6868 10.4378 18 14 7.1820 -8.0267 8.2005 19 1 8.5752 -7.5755 7.9549 20 1 7.2002 -9.2707 9.0114 21 1 6.5114 -8.2917 6.9024 22 6 2.7968 -1.7916 1.2075 23 7 3.2759 -2.4683 0.1043 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 2.3215 -1.1189 4.4042 32 1 3.5325 -2.8310 4.9934 33 1 4.3166 -5.5003 4.5086 34 1 5.7742 -4.4787 4.5063 35 1 5.1780 -3.6216 6.7550 36 1 3.7202 -4.6429 6.7580 37 1 5.1392 -6.6672 6.5595 38 1 6.5965 -5.6452 6.5566 39 1 6.7265 -7.3717 10.9289 40 1 3.8316 -3.2548 0.2213 41 1 3.0572 -2.1575 -0.7882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758051027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:23 Heat of formation + Delta-G solvation = -8.697427 kcal Electronic energy + Delta-G solvation = -21176.133522 eV Core-core repulsion = 17897.693393 eV Total energy + Delta-G solvation = -3278.440129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.36989 -40.09477 -36.92005 -36.60719 -35.67629 -34.99405 -33.25669 -31.18290 -29.96179 -28.55882 -28.20934 -25.05118 -23.90510 -23.18273 -22.15888 -20.97147 -20.72476 -19.03456 -18.79532 -17.85844 -17.10862 -16.72312 -16.67481 -16.22843 -16.12404 -15.77556 -15.24571 -15.10704 -14.76237 -14.61553 -14.16627 -13.94031 -13.74482 -13.52103 -13.11482 -13.10436 -12.69110 -12.64581 -12.37823 -12.36948 -12.20263 -11.92075 -11.77247 -11.62255 -11.54542 -11.29189 -10.76947 -10.73664 -10.09191 -9.87516 -8.82567 -8.26916 -6.30478 0.84706 1.24995 1.29410 1.38798 1.40244 1.52515 2.38743 2.47658 2.61243 2.72496 3.08816 3.43010 3.89028 3.93055 4.02068 4.11809 4.20454 4.27710 4.35239 4.55956 4.63294 4.68189 4.71452 4.80382 4.82823 4.95447 5.01641 5.08536 5.19740 5.22896 5.44953 5.48371 5.57930 5.60686 5.67127 5.71616 6.27994 6.30804 6.52968 6.72060 6.77977 6.94324 7.34118 7.43853 8.89564 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.002700 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.335659 B =10366.176539 C =10819.847664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 C -0.155 4.155 4 N -0.390 5.390 5 N -0.317 5.317 6 C 0.111 3.889 7 C -0.396 4.396 8 C 0.596 3.404 9 O -0.605 6.605 10 N -0.717 5.717 11 C 0.132 3.868 12 C -0.101 4.101 13 C -0.012 4.012 14 C -0.529 4.529 15 H 0.037 0.963 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.247 1.247 22 C 0.429 3.571 23 N -0.820 5.820 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.052 0.948 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.210 0.790 32 H 0.410 0.590 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.266 0.734 40 H 0.427 0.573 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 15.538 -27.113 33.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 C -0.213 4.213 4 N -0.179 5.179 5 N -0.135 5.135 6 C -0.079 4.079 7 C -0.415 4.415 8 C 0.388 3.612 9 O -0.490 6.490 10 N -0.367 5.367 11 C 0.008 3.992 12 C -0.139 4.139 13 C -0.050 4.050 14 C -0.567 4.567 15 H 0.056 0.944 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.772 3.228 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.171 1.171 22 C 0.192 3.808 23 N -0.371 5.371 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.071 0.929 27 H 0.135 0.865 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.226 0.774 32 H 0.247 0.753 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.263 0.737 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.334 16.049 -27.670 33.936 hybrid contribution 0.986 -1.368 0.520 1.765 sum -10.348 14.681 -27.149 32.553 Atomic orbital electron populations 1.22100 0.92422 1.02650 1.04150 1.21647 0.96392 0.94476 0.82767 1.22099 1.01177 0.93896 1.04149 1.48784 1.41132 1.21276 1.06712 1.76991 1.26184 1.24332 0.86025 1.24158 0.92492 0.90355 1.00892 1.19309 1.22699 1.08065 0.91464 1.17297 0.78755 0.83173 0.81979 1.90628 1.52310 1.49296 1.56729 1.45638 1.53533 1.30923 1.06632 1.21233 0.95104 0.88811 0.94030 1.21482 1.00782 0.99413 0.92174 1.19468 0.96051 0.95482 0.93992 1.21482 1.31345 1.11983 0.91929 0.94441 1.26000 0.97336 1.00467 0.95568 1.70062 1.44754 1.36413 1.07972 0.85684 0.79440 0.78193 0.79516 1.19252 1.21072 1.17065 1.18197 0.87856 0.85600 0.89100 1.41774 1.57454 1.33362 1.04487 0.92364 0.87957 0.92931 0.86454 0.92357 0.92925 0.87963 0.77372 0.75348 0.92623 0.92554 0.91765 0.91781 0.96099 0.96201 0.92555 0.73733 0.75503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.44 71.98 0.68 -0.79 16 2 C 0.15 1.57 3.67 44.99 0.17 1.74 16 3 C -0.16 -1.47 9.44 71.98 0.68 -0.79 16 4 N -0.39 -7.22 3.27 -323.35 -1.06 -8.28 16 5 N -0.32 -7.02 12.30 -56.22 -0.69 -7.71 16 6 C 0.11 2.41 11.49 85.72 0.99 3.40 16 7 C -0.40 -10.01 6.15 -19.99 -0.12 -10.13 16 8 C 0.60 18.05 7.79 86.47 0.67 18.72 16 9 O -0.61 -21.46 15.14 -4.31 -0.07 -21.52 16 10 N -0.72 -20.25 5.55 -466.98 -2.59 -22.84 16 11 C 0.13 4.37 5.67 86.38 0.49 4.86 16 12 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 13 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 14 C -0.53 -30.44 9.66 25.60 0.25 -30.19 16 15 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 16 C 0.00 0.17 5.47 84.66 0.46 0.63 16 17 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 18 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 22 C 0.43 9.18 7.98 132.69 1.06 10.24 16 23 N -0.82 -13.20 9.03 -54.57 -0.49 -13.69 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.12 0.62 6.77 -2.39 -0.02 0.60 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.21 3.22 7.50 -2.91 -0.02 3.20 16 32 H 0.41 9.35 7.42 -92.71 -0.69 8.66 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 38 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 39 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.43 8.36 7.01 -92.70 -0.65 7.71 16 41 H 0.41 3.45 7.61 -92.71 -0.71 2.75 16 Total: -1.00 -75.70 342.36 1.85 -73.85 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -1.04 Total: 19.51 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.60 Total: -6.32 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.53 Total: -112.25 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -75.70 1.85 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758051027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.155 kcal (2) G-P(sol) polarization free energy of solvation -75.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds