Wall clock time and date at job start Tue Mar 31 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47335 * 2 1 4 4 C 1.53003 * 109.46731 * 119.99880 * 2 1 3 5 5 C 1.52999 * 109.47226 * 174.99933 * 4 2 1 6 6 N 1.46494 * 109.47518 * 180.02562 * 5 4 2 7 7 N 1.40074 * 126.04487 * 270.33123 * 6 5 4 8 8 C 1.30844 * 108.37091 * 180.13774 * 7 6 5 9 9 C 1.39769 * 108.32198 * 359.58259 * 8 7 6 10 10 C 1.35247 * 126.04390 * 89.99717 * 6 5 4 11 11 N 1.39499 * 126.21665 * 0.03816 * 10 6 5 12 12 C 1.34778 * 119.99938 * 179.97438 * 11 10 6 13 13 O 1.21593 * 120.00332 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99911 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00318 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47423 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99727 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99864 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00017 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99844 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47249 * 89.99792 * 20 18 16 22 22 H 1.48497 * 109.46905 * 209.99748 * 20 18 16 23 23 H 1.48494 * 109.47104 * 329.99810 * 20 18 16 24 24 H 1.09000 * 109.47706 * 300.00500 * 1 2 3 25 25 H 1.09007 * 109.47125 * 60.00217 * 1 2 3 26 26 H 1.09001 * 109.47750 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47284 * 239.99358 * 2 1 3 28 28 H 1.08997 * 109.47603 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47351 * 299.99595 * 3 2 1 30 30 H 1.09002 * 109.47464 * 59.99845 * 3 2 1 31 31 H 1.09001 * 109.47511 * 55.00403 * 4 2 1 32 32 H 1.08997 * 109.47453 * 295.00044 * 4 2 1 33 33 H 1.09006 * 109.46927 * 59.99682 * 5 4 2 34 34 H 1.09002 * 109.47432 * 300.00558 * 5 4 2 35 35 H 1.08002 * 125.84110 * 179.85519 * 8 7 6 36 36 H 1.07998 * 126.08924 * 180.28644 * 9 8 7 37 37 H 0.97004 * 120.00110 * 359.97438 * 11 10 6 38 38 H 0.97004 * 120.00138 * 0.02562 * 14 12 11 39 39 H 1.09000 * 109.47299 * 300.00872 * 15 14 12 40 40 H 1.09003 * 109.46530 * 60.00689 * 15 14 12 41 41 H 0.96996 * 119.99805 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1881 6 7 4.0529 -1.5222 2.3840 7 7 4.4145 -0.9184 3.5950 8 6 4.8024 -1.8544 4.4230 9 6 4.6932 -3.0876 3.7742 10 6 4.2282 -2.8568 2.5160 11 7 3.9780 -3.8215 1.5400 12 6 4.1985 -5.1239 1.8076 13 8 4.6150 -5.4581 2.9000 14 7 3.9562 -6.0560 0.8648 15 6 4.1964 -7.4717 1.1554 16 6 3.8500 -8.2990 -0.0556 17 1 3.4868 -7.8184 -0.9520 18 6 3.9957 -9.6696 -0.0188 19 7 4.4374 -10.2548 1.0730 20 14 3.5656 -10.6951 -1.5197 21 1 4.7665 -10.8395 -2.3812 22 1 3.1034 -12.0379 -1.0857 23 1 2.4851 -10.0232 -2.2853 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1584 2.1370 33 1 3.9993 0.1675 1.1422 34 1 3.8531 -1.3940 0.3004 35 1 5.1439 -1.7009 5.4360 36 1 4.9344 -4.0520 4.1963 37 1 3.6453 -3.5550 0.6686 38 1 3.6236 -5.7895 -0.0066 39 1 5.2469 -7.6179 1.4066 40 1 3.5753 -7.7803 1.9964 41 1 4.5403 -11.2190 1.0987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785983093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:54 Heat of formation + Delta-G solvation = 13.222352 kcal Electronic energy + Delta-G solvation = -21532.870099 eV Core-core repulsion = 18255.380483 eV Total energy + Delta-G solvation = -3277.489616 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54194 -40.79420 -37.95879 -36.40920 -35.90151 -34.36811 -33.95715 -30.40563 -29.49889 -28.81543 -28.02629 -25.14838 -24.79181 -23.06487 -21.92675 -21.29925 -20.94552 -19.73286 -18.93824 -17.86613 -17.02041 -16.90965 -16.55440 -16.27386 -15.90705 -15.67186 -15.03563 -14.96077 -14.65889 -14.51595 -14.15780 -14.05103 -14.04536 -13.58119 -13.15084 -12.90928 -12.79713 -12.72012 -12.40818 -12.21518 -12.09554 -11.91022 -11.77417 -11.61743 -11.52795 -11.46433 -11.12727 -10.80576 -10.04844 -9.86204 -9.03554 -8.27415 -6.43598 0.78470 0.95873 1.46271 1.47944 1.59011 1.82207 1.92608 2.24594 2.39982 3.08365 3.24747 3.52065 3.75008 3.94584 3.95488 4.20104 4.27368 4.37116 4.47745 4.61071 4.73671 4.77038 4.84601 4.95713 4.99875 5.04035 5.05897 5.07275 5.16591 5.27004 5.28546 5.42265 5.43945 5.47804 5.60808 5.81148 5.82399 5.92246 6.15969 6.66073 6.73292 7.07899 7.25780 7.50376 8.84633 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.003627 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.545885 B = 7718.817333 C = 9092.683294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.125 4.125 5 C 0.122 3.878 6 N -0.382 5.382 7 N -0.312 5.312 8 C 0.064 3.936 9 C -0.317 4.317 10 C 0.326 3.674 11 N -0.646 5.646 12 C 0.700 3.300 13 O -0.606 6.606 14 N -0.708 5.708 15 C 0.285 3.715 16 C -0.555 4.555 17 H 0.086 0.914 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.984 3.016 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.255 1.255 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.213 0.787 36 H 0.147 0.853 37 H 0.422 0.578 38 H 0.408 0.592 39 H -0.008 1.008 40 H -0.008 1.008 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 22.158 -5.360 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.164 4.164 5 C 0.002 3.998 6 N -0.170 5.170 7 N -0.134 5.134 8 C -0.121 4.121 9 C -0.349 4.349 10 C 0.104 3.896 11 N -0.298 5.298 12 C 0.400 3.600 13 O -0.485 6.485 14 N -0.362 5.362 15 C 0.162 3.838 16 C -0.593 4.593 17 H 0.104 0.896 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.807 3.193 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.179 1.179 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.229 0.771 36 H 0.164 0.836 37 H 0.260 0.740 38 H 0.244 0.756 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.472 22.902 -4.641 24.000 hybrid contribution -0.201 -1.602 -0.766 1.787 sum -5.673 21.301 -5.407 22.697 Atomic orbital electron populations 1.21838 0.94766 1.01832 1.02162 1.21044 0.96167 0.96647 0.96869 1.21926 1.01384 0.95335 1.02193 1.22025 0.93381 1.01227 0.99756 1.22133 0.95371 0.99576 0.82723 1.48835 1.53994 1.01277 1.12913 1.77337 1.23909 1.20865 0.91297 1.24126 0.97817 0.89474 1.00719 1.21655 1.18019 1.00780 0.94480 1.17725 0.99413 0.81789 0.90684 1.41623 1.68921 1.03201 1.16032 1.15909 0.79173 0.80293 0.84663 1.90836 1.52864 1.80443 1.24340 1.45263 1.68765 1.06712 1.15441 1.18532 0.94368 0.74724 0.96165 1.21582 1.46034 0.92315 0.99344 0.89586 1.26018 0.94364 0.99234 0.99807 1.70132 1.45879 1.11126 1.29633 0.85167 0.78930 0.77226 0.77953 1.19710 1.21179 1.17861 0.93115 0.91468 0.92955 0.89511 0.92012 0.91620 0.93087 0.92333 0.92123 0.87061 0.87522 0.77083 0.83573 0.74007 0.75551 0.98961 0.98969 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 71.98 0.66 -1.08 16 2 C -0.09 -0.98 2.92 -10.80 -0.03 -1.01 16 3 C -0.15 -1.52 8.95 71.98 0.64 -0.87 16 4 C -0.13 -1.95 5.01 30.59 0.15 -1.80 16 5 C 0.12 2.03 6.01 86.38 0.52 2.55 16 6 N -0.38 -9.90 3.62 -344.98 -1.25 -11.15 16 7 N -0.31 -8.89 12.56 -57.09 -0.72 -9.61 16 8 C 0.06 1.82 12.01 85.21 1.02 2.84 16 9 C -0.32 -11.07 9.65 22.14 0.21 -10.86 16 10 C 0.33 10.23 7.66 131.31 1.01 11.23 16 11 N -0.65 -19.06 5.42 -322.30 -1.75 -20.80 16 12 C 0.70 27.99 8.53 179.05 1.53 29.51 16 13 O -0.61 -29.80 13.47 -4.01 -0.05 -29.85 16 14 N -0.71 -28.41 5.55 -482.28 -2.68 -31.09 16 15 C 0.28 15.01 5.43 85.63 0.46 15.47 16 16 C -0.55 -28.90 9.28 25.60 0.24 -28.66 16 17 H 0.09 3.99 7.60 -2.91 -0.02 3.97 16 18 C 0.01 0.31 5.46 84.65 0.46 0.77 16 19 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 20 Si 0.98 41.00 29.54 68.60 2.03 43.02 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.57 6.56 -2.39 -0.02 0.55 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.11 1.62 6.56 -2.38 -0.02 1.61 16 34 H 0.11 1.30 7.50 -2.39 -0.02 1.28 16 35 H 0.21 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.15 6.01 5.82 -2.91 -0.02 6.00 16 37 H 0.42 8.65 7.98 -92.70 -0.74 7.91 16 38 H 0.41 12.99 8.34 -92.70 -0.77 12.21 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -71.83 343.01 2.28 -69.55 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.47 Total: 26.25 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.88 Total: 18.09 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -6.11 Total: -127.07 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.05 Total: -29.85 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -71.83 2.28 -69.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785983093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.776 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds