Wall clock time and date at job start Tue Mar 31 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47192 * 2 1 4 4 C 1.53000 * 109.47192 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47332 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47332 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47278 * 180.02562 * 6 5 4 8 8 C 1.35307 * 125.87122 * 125.32273 * 7 6 5 9 9 C 1.35348 * 106.17855 * 180.11522 * 8 7 6 10 10 C 1.50700 * 126.75278 * 179.85505 * 9 8 7 11 11 N 1.46501 * 109.47206 * 94.71543 * 10 9 8 12 12 C 1.34772 * 119.99823 * 179.72209 * 11 10 9 13 13 O 1.21695 * 120.00176 * 0.27723 * 12 11 10 14 14 C 1.46375 * 120.00131 * 180.27515 * 12 11 10 15 15 H 1.08005 * 119.99733 * 353.94178 * 14 12 11 16 16 C 1.40042 * 120.00170 * 173.94085 * 14 12 11 17 17 N 1.30669 * 120.00455 * 6.15206 * 16 14 12 18 18 Si 1.86803 * 119.99867 * 186.14923 * 16 14 12 19 19 H 1.48498 * 109.47177 * 94.98772 * 18 16 14 20 20 H 1.48502 * 109.47127 * 214.98238 * 18 16 14 21 21 H 1.48493 * 109.47253 * 334.98410 * 18 16 14 22 22 N 1.33773 * 106.49730 * 359.59596 * 9 8 7 23 23 N 1.28638 * 108.88112 * 0.25837 * 22 9 8 24 24 H 1.08993 * 109.47494 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46966 * 300.00354 * 1 2 3 26 26 H 1.08999 * 109.47305 * 59.99839 * 1 2 3 27 27 H 1.08994 * 109.47047 * 239.99727 * 2 1 3 28 28 H 1.09001 * 109.46650 * 119.99809 * 2 1 3 29 29 H 1.08994 * 109.47347 * 59.99911 * 3 2 1 30 30 H 1.09002 * 109.46786 * 299.99875 * 3 2 1 31 31 H 1.09003 * 109.46966 * 59.99646 * 4 3 2 32 32 H 1.09001 * 109.46650 * 299.99809 * 4 3 2 33 33 H 1.09003 * 109.47449 * 59.99610 * 5 4 3 34 34 H 1.09002 * 109.46966 * 300.00070 * 5 4 3 35 35 H 1.09003 * 109.46966 * 59.99952 * 6 5 4 36 36 H 1.09001 * 109.46650 * 300.00115 * 6 5 4 37 37 H 1.07999 * 126.91297 * 359.97438 * 8 7 6 38 38 H 1.09002 * 109.47180 * 334.71245 * 10 9 8 39 39 H 1.09008 * 109.46803 * 214.71755 * 10 9 8 40 40 H 0.96992 * 119.99679 * 359.97438 * 11 10 9 41 41 H 0.97000 * 120.00488 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0026 7 7 6.0984 4.2661 -0.0026 8 6 6.9612 4.8020 0.8915 9 6 7.1350 6.0922 0.5211 10 6 8.0051 7.1166 1.2027 11 7 9.3166 7.1547 0.5508 12 6 10.2633 8.0070 0.9910 13 8 10.0304 8.7413 1.9331 14 6 11.5716 8.0494 0.3360 15 1 11.8132 7.3323 -0.4347 16 6 12.5101 9.0198 0.7085 17 7 12.2666 9.8098 1.7204 18 14 14.1101 9.1849 -0.2413 19 1 13.9628 10.2355 -1.2804 20 1 15.2029 9.5610 0.6913 21 1 14.4367 7.8896 -0.8898 22 7 6.3870 6.2776 -0.5724 23 7 5.7854 5.1767 -0.8568 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8909 32 1 3.9336 0.9285 0.8892 33 1 3.7171 3.3991 0.8887 34 1 3.7163 3.3985 -0.8913 35 1 5.9726 2.3709 -0.8928 36 1 5.9741 2.3712 0.8872 37 1 7.4173 4.3017 1.7328 38 1 8.1285 6.8482 2.2519 39 1 7.5352 8.0976 1.1314 40 1 9.5023 6.5692 -0.1998 41 1 12.9165 10.4822 1.9782 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849139106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:58 Heat of formation + Delta-G solvation = 2.747586 kcal Electronic energy + Delta-G solvation = -20472.475784 eV Core-core repulsion = 17194.531949 eV Total energy + Delta-G solvation = -3277.943836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.29390 -39.36788 -37.82024 -36.14732 -35.26582 -34.46422 -33.11187 -32.18996 -29.51210 -28.87053 -26.79160 -25.83040 -23.02320 -22.84558 -21.89072 -21.83303 -21.43247 -19.36970 -18.12243 -17.56605 -17.37787 -16.77537 -16.21499 -16.00702 -15.91666 -15.46413 -15.17948 -14.82208 -14.54750 -14.11413 -14.04201 -13.73238 -13.55580 -13.40400 -13.09391 -12.81442 -12.66926 -12.59281 -12.53167 -12.44675 -11.98950 -11.90133 -11.84665 -11.69830 -11.60064 -11.36175 -10.98314 -10.91678 -10.42955 -9.79831 -9.49995 -8.28525 -6.83712 0.59087 1.32827 1.42238 1.43349 1.44922 1.59001 2.27432 2.48410 3.17935 3.36651 3.49825 3.63317 3.76646 3.89046 3.99552 4.07841 4.17344 4.22326 4.31155 4.36287 4.50601 4.54791 4.67207 4.75953 4.79853 4.90657 4.97317 5.02193 5.05038 5.07539 5.18018 5.24411 5.33947 5.34881 5.45735 5.51939 5.67352 5.87871 6.16969 6.26934 6.88186 7.46301 7.51822 8.48571 8.67864 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.054367 B = 0.002222 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.897170 B =12597.556696 C =12784.670632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.105 3.895 7 N -0.281 5.281 8 C -0.011 4.011 9 C -0.048 4.048 10 C 0.224 3.776 11 N -0.748 5.748 12 C 0.541 3.459 13 O -0.629 6.629 14 C -0.574 4.574 15 H 0.085 0.915 16 C 0.030 3.970 17 N -0.820 5.820 18 Si 0.998 3.002 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.249 1.249 22 N -0.299 5.299 23 N -0.106 5.106 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.232 0.768 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.391 0.609 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.738 -23.838 -2.968 29.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C -0.160 4.160 4 C -0.146 4.146 5 C -0.166 4.166 6 C -0.013 4.013 7 N -0.075 5.075 8 C -0.164 4.164 9 C -0.186 4.186 10 C 0.098 3.902 11 N -0.403 5.403 12 C 0.345 3.655 13 O -0.517 6.517 14 C -0.610 4.610 15 H 0.103 0.897 16 C -0.185 4.185 17 N -0.449 5.449 18 Si 0.817 3.183 19 H -0.191 1.191 20 H -0.194 1.194 21 H -0.172 1.172 22 N -0.166 5.166 23 N -0.086 5.086 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.160 0.840 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.224 0.776 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.746 -22.890 -3.431 29.166 hybrid contribution 1.011 0.074 0.318 1.063 sum -16.735 -22.815 -3.113 28.466 Atomic orbital electron populations 1.21806 0.96127 1.01843 1.01646 1.21525 0.95761 0.96398 1.02438 1.21607 0.95355 0.97194 1.01815 1.21483 0.95453 0.93912 1.03786 1.21834 0.92292 0.99464 1.02978 1.22696 0.96506 0.74229 1.07905 1.47793 1.29232 1.12853 1.17595 1.23913 0.98285 0.94131 1.00022 1.21937 1.03346 0.95929 0.97418 1.18895 0.81921 0.94394 0.94975 1.45826 1.12529 1.44262 1.37682 1.18582 0.85161 0.78725 0.83020 1.90555 1.82590 1.45910 1.32619 1.21400 0.98420 1.18153 1.23050 0.89651 1.26954 1.03480 0.93423 0.94690 1.70178 1.35759 1.15695 1.23263 0.85004 0.75314 0.79888 0.78046 1.19064 1.19421 1.17188 1.75061 1.09609 1.17340 1.14551 1.78156 1.21458 0.93150 1.15814 0.92323 0.92955 0.93062 0.91672 0.91455 0.92367 0.92648 0.90508 0.89904 0.91834 0.91966 0.86777 0.83975 0.75126 0.90760 0.94274 0.77593 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.12 -0.98 5.93 30.59 0.18 -0.80 16 3 C -0.12 -1.11 5.21 30.59 0.16 -0.95 16 4 C -0.11 -0.74 5.21 30.59 0.16 -0.58 16 5 C -0.13 -1.43 5.34 30.59 0.16 -1.26 16 6 C 0.11 1.13 6.46 86.38 0.56 1.69 16 7 N -0.28 -6.20 3.44 -347.74 -1.20 -7.39 16 8 C -0.01 -0.26 11.50 83.49 0.96 0.70 16 9 C -0.05 -1.62 6.61 41.60 0.28 -1.34 16 10 C 0.22 9.28 6.23 85.63 0.53 9.82 16 11 N -0.75 -35.53 5.54 -471.13 -2.61 -38.14 16 12 C 0.54 32.21 7.74 86.36 0.67 32.88 16 13 O -0.63 -42.82 15.05 -4.33 -0.07 -42.89 16 14 C -0.57 -33.27 9.53 24.83 0.24 -33.04 16 15 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 16 C 0.03 1.69 5.49 85.30 0.47 2.16 16 17 N -0.82 -50.70 11.85 21.83 0.26 -50.44 16 18 Si 1.00 41.59 29.56 68.60 2.03 43.62 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 22 N -0.30 -11.20 12.41 -48.60 -0.60 -11.80 16 23 N -0.11 -3.31 12.91 37.02 0.48 -2.83 16 24 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.14 0.53 8.07 -2.39 -0.02 0.51 16 37 H 0.23 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.39 16.83 8.44 -92.71 -0.78 16.05 16 41 H 0.28 15.35 8.29 -92.71 -0.77 14.59 16 Total: -1.00 -83.27 351.96 3.60 -79.67 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.23 Total: 21.58 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.08 Total: 8.62 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -3.67 Total: -110.60 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.07 Total: -42.89 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -83.27 3.60 -79.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849139106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.414 kcal (2) G-P(sol) polarization free energy of solvation -83.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds