Wall clock time and date at job start Tue Mar 31 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47176 * 2 1 4 4 C 1.52997 * 109.47094 * 239.99968 * 2 1 3 5 5 C 1.52996 * 109.47116 * 120.00093 * 2 1 3 6 6 N 1.46902 * 109.47081 * 38.90825 * 5 2 1 7 7 C 1.46901 * 111.00060 * 44.82929 * 6 5 2 8 8 C 1.50704 * 109.47162 * 73.05970 * 7 6 5 9 9 H 1.07991 * 120.00069 * 3.86108 * 8 7 6 10 10 C 1.37874 * 119.99590 * 183.86214 * 8 7 6 11 11 N 1.31513 * 120.00371 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99553 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47102 * 60.00207 * 12 10 8 14 14 H 1.48506 * 109.46969 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47198 * 299.99944 * 12 10 8 16 16 C 1.46900 * 111.00203 * 280.86972 * 6 5 2 17 17 C 1.50694 * 109.47202 * 293.34729 * 16 6 5 18 18 C 1.38155 * 119.59928 * 96.06555 * 17 16 6 19 19 C 1.38706 * 119.21732 * 180.02562 * 18 17 16 20 20 C 1.38542 * 118.45568 * 0.27564 * 19 18 17 21 21 C 1.38529 * 119.13904 * 359.45306 * 20 19 18 22 22 F 1.35101 * 119.64896 * 180.27567 * 21 20 19 23 23 N 1.31905 * 119.60325 * 276.08684 * 17 16 6 24 24 H 1.08996 * 109.47042 * 305.89868 * 1 2 3 25 25 H 1.09000 * 109.46902 * 65.90124 * 1 2 3 26 26 H 1.08998 * 109.46808 * 185.89709 * 1 2 3 27 27 H 1.09003 * 109.47323 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47435 * 300.00073 * 3 2 1 29 29 H 1.09006 * 109.47406 * 59.99880 * 3 2 1 30 30 H 1.08999 * 109.47494 * 287.64502 * 4 2 1 31 31 H 1.09005 * 109.47089 * 47.64773 * 4 2 1 32 32 H 1.09002 * 109.47167 * 167.64463 * 4 2 1 33 33 H 1.09000 * 109.47165 * 278.91095 * 5 2 1 34 34 H 1.09003 * 109.47424 * 158.90938 * 5 2 1 35 35 H 1.09000 * 109.46978 * 193.06388 * 7 6 5 36 36 H 1.09000 * 109.46634 * 313.06103 * 7 6 5 37 37 H 0.96998 * 119.99921 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.47067 * 173.34633 * 16 6 5 39 39 H 1.09003 * 109.46691 * 53.34606 * 16 6 5 40 40 H 1.07992 * 120.39105 * 359.97438 * 18 17 16 41 41 H 1.07999 * 120.76969 * 180.02562 * 19 18 17 42 42 H 1.07998 * 120.43235 * 179.70619 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.1871 -1.8851 1.5252 7 6 0.9105 -2.6386 0.2948 8 6 2.1497 -3.3859 -0.1259 9 1 3.0332 -3.3591 0.4945 10 6 2.1554 -4.1038 -1.3030 11 7 1.0796 -4.1360 -2.0589 12 14 3.6912 -5.0307 -1.8242 13 1 4.0373 -6.0370 -0.7886 14 1 3.4405 -5.7165 -3.1174 15 1 4.8168 -4.0748 -1.9815 16 6 -0.0606 -1.4787 2.1855 17 6 0.2495 -0.9438 3.5598 18 6 0.3839 0.4183 3.7476 19 6 0.6699 0.9020 5.0157 20 6 0.8165 -0.0067 6.0512 21 6 0.6622 -1.3583 5.7896 22 9 0.7973 -2.2529 6.7928 23 7 0.3898 -1.7818 4.5687 24 1 -0.3633 0.6026 0.8324 25 1 -0.3633 0.4196 -0.9381 26 1 -0.3633 -1.0222 0.1056 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.8675 -1.7925 -1.1462 31 1 1.5084 -0.3502 -2.1255 32 1 3.1076 -0.5348 -1.3660 33 1 2.0111 -0.0398 2.0994 34 1 3.0652 -1.0530 1.0842 35 1 0.1028 -3.3475 0.4769 36 1 0.6166 -1.9481 -0.4957 37 1 1.0835 -4.6413 -2.8868 38 1 -0.7232 -2.3398 2.2717 39 1 -0.5480 -0.7028 1.5951 40 1 0.2684 1.0984 2.9167 41 1 0.7797 1.9619 5.1910 42 1 1.0440 0.3345 7.0503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851781121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:13 Heat of formation + Delta-G solvation = 31.006797 kcal Electronic energy + Delta-G solvation = -23116.769512 eV Core-core repulsion = 19820.131126 eV Total energy + Delta-G solvation = -3296.638386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.98725 -41.65780 -40.30941 -35.29765 -34.96327 -33.55272 -32.31271 -29.74776 -29.19614 -27.49043 -27.24580 -25.85220 -24.33566 -23.45986 -21.89004 -19.72452 -18.85853 -18.36378 -17.84710 -17.17534 -17.05587 -16.79139 -16.61229 -15.99237 -15.77707 -15.15292 -14.88673 -14.49415 -14.33083 -14.15771 -13.87227 -13.81290 -13.26419 -13.07570 -12.97315 -12.76324 -12.56908 -12.54354 -12.40663 -12.32375 -12.02531 -11.96063 -11.50185 -11.25835 -11.13293 -10.87703 -10.74694 -10.50722 -10.46868 -9.84586 -8.56931 -8.11252 -6.17081 -0.04049 0.25336 1.41037 1.42372 1.49660 2.41428 2.56192 2.67265 3.17809 3.47689 3.58939 3.86392 4.01834 4.05025 4.06105 4.14547 4.25361 4.44904 4.50290 4.69987 4.74077 4.76288 4.83814 4.85855 4.95233 5.03238 5.04666 5.11172 5.13660 5.18668 5.20495 5.31250 5.44489 5.50319 5.52267 5.61396 5.72220 5.74950 6.11637 6.27460 6.51954 6.71288 6.85721 6.94839 7.46657 8.94233 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.005624 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.712837 B = 4977.456722 C = 5923.728906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.201 4.201 5 C 0.077 3.923 6 N -0.541 5.541 7 C 0.171 3.829 8 C -0.503 4.503 9 H 0.047 0.953 10 C 0.017 3.983 11 N -0.921 5.921 12 Si 0.945 3.055 13 H -0.279 1.279 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.061 3.939 17 C 0.167 3.833 18 C -0.174 4.174 19 C -0.033 4.033 20 C -0.189 4.189 21 C 0.272 3.728 22 F -0.130 7.130 23 N -0.546 5.546 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.080 0.920 34 H 0.045 0.955 35 H -0.017 1.017 36 H 0.056 0.944 37 H 0.263 0.737 38 H 0.056 0.944 39 H 0.110 0.890 40 H 0.167 0.833 41 H 0.193 0.807 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 16.441 10.860 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.090 4.090 3 C -0.187 4.187 4 C -0.257 4.257 5 C -0.051 4.051 6 N -0.265 5.265 7 C 0.046 3.954 8 C -0.542 4.542 9 H 0.065 0.935 10 C -0.182 4.182 11 N -0.561 5.561 12 Si 0.771 3.229 13 H -0.204 1.204 14 H -0.207 1.207 15 H -0.195 1.195 16 C -0.066 4.066 17 C 0.029 3.971 18 C -0.194 4.194 19 C -0.058 4.058 20 C -0.210 4.210 21 C 0.119 3.881 22 F -0.109 7.109 23 N -0.261 5.261 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.001 0.999 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.185 0.815 41 H 0.211 0.789 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.656 15.104 10.919 18.711 hybrid contribution 0.500 -0.392 -0.769 0.997 sum -1.156 14.713 10.151 17.912 Atomic orbital electron populations 1.22689 0.95311 1.02194 1.01901 1.21012 0.95557 0.96385 0.96008 1.21808 1.00661 0.93932 1.02313 1.23112 0.98404 1.08248 0.95917 1.22116 0.96531 0.90566 0.95862 1.62066 1.14978 1.22211 1.27207 1.20441 0.94815 0.92661 0.87456 1.21162 0.99130 1.29162 1.04734 0.93515 1.25552 0.98713 0.97311 0.96662 1.70019 1.29204 1.42834 1.14077 0.85801 0.80647 0.79087 0.77340 1.20442 1.20702 1.19479 1.22000 0.93260 1.01526 0.89805 1.21093 0.93042 0.90321 0.92610 1.22353 1.01846 0.95003 1.00241 1.21978 0.91628 1.02181 0.90054 1.22153 1.04733 0.90102 1.04060 1.18666 0.99446 0.86344 0.83636 1.91569 1.93028 1.69432 1.56908 1.66680 1.15840 1.43554 1.00055 0.89833 0.92779 0.92074 0.93189 0.92642 0.90640 0.85158 0.95389 0.95206 0.90180 0.93665 0.99915 0.92677 0.92759 0.92530 0.87277 0.81510 0.78940 0.80557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 6.23 71.98 0.45 -4.52 16 2 C -0.09 -2.87 0.77 -52.18 -0.04 -2.91 16 3 C -0.13 -3.16 8.34 71.98 0.60 -2.56 16 4 C -0.20 -8.28 7.66 71.98 0.55 -7.73 16 5 C 0.08 2.79 4.71 86.30 0.41 3.19 16 6 N -0.54 -22.90 4.63 -905.37 -4.20 -27.09 16 7 C 0.17 8.60 3.37 85.56 0.29 8.89 16 8 C -0.50 -27.81 6.93 25.60 0.18 -27.63 16 9 H 0.05 2.67 7.75 -2.92 -0.02 2.64 16 10 C 0.02 0.92 4.79 84.65 0.41 1.32 16 11 N -0.92 -52.87 13.24 21.45 0.28 -52.58 16 12 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 C 0.06 2.18 4.63 85.56 0.40 2.58 16 17 C 0.17 5.20 5.70 42.53 0.24 5.44 16 18 C -0.17 -3.62 8.05 22.36 0.18 -3.44 16 19 C -0.03 -0.51 10.17 22.45 0.23 -0.28 16 20 C -0.19 -3.64 10.09 22.41 0.23 -3.42 16 21 C 0.27 8.10 8.41 84.73 0.71 8.82 16 22 F -0.13 -4.04 17.29 44.97 0.78 -3.26 16 23 N -0.55 -19.66 10.29 -184.94 -1.90 -21.57 16 24 H 0.08 1.89 6.23 -2.39 -0.01 1.88 16 25 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 26 H 0.06 2.23 3.37 -2.39 -0.01 2.23 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.38 8.13 -2.38 -0.02 1.36 16 30 H 0.13 6.39 1.82 -2.39 0.00 6.38 16 31 H 0.03 1.10 8.04 -2.38 -0.02 1.08 16 32 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 33 H 0.08 2.39 5.33 -2.39 -0.01 2.38 16 34 H 0.04 1.87 7.74 -2.39 -0.02 1.85 16 35 H -0.02 -0.98 7.78 -2.39 -0.02 -1.00 16 36 H 0.06 2.74 2.70 -2.39 -0.01 2.73 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.06 2.27 7.84 -2.39 -0.02 2.25 16 39 H 0.11 3.26 3.14 -2.39 -0.01 3.25 16 40 H 0.17 2.51 7.35 -2.91 -0.02 2.49 16 41 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -67.81 320.23 2.85 -64.97 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.03 Total: 15.39 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 4.82 Total: -22.24 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -5.81 Total: -101.24 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.81 2.85 -64.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851781121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.973 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds