Wall clock time and date at job start Tue Mar 31 2020 02:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35046 * 126.39625 * 2 1 4 4 N 1.30493 * 108.70090 * 179.82647 * 3 2 1 5 5 C 1.34129 * 109.25726 * 0.44048 * 4 3 2 6 6 C 1.34672 * 108.01944 * 359.72733 * 5 4 3 7 7 C 1.50693 * 126.59133 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47255 * 94.95563 * 7 6 5 9 9 C 1.34772 * 119.99989 * 179.97438 * 8 7 6 10 10 O 1.21582 * 120.00257 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99668 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99819 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46894 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47141 * 299.99446 * 13 12 11 15 15 C 1.52991 * 109.47637 * 59.99748 * 13 12 11 16 16 C 1.50710 * 109.47024 * 180.02562 * 13 12 11 17 17 H 1.07998 * 119.99492 * 1.34037 * 16 13 12 18 18 C 1.37877 * 119.99933 * 181.34403 * 16 13 12 19 19 N 1.31514 * 119.99731 * 193.97125 * 18 16 13 20 20 Si 1.86800 * 119.99948 * 13.97513 * 18 16 13 21 21 H 1.48502 * 109.47257 * 84.54977 * 20 18 16 22 22 H 1.48501 * 109.46597 * 204.54932 * 20 18 16 23 23 H 1.48499 * 109.47316 * 324.54601 * 20 18 16 24 24 H 1.09002 * 109.46741 * 269.68652 * 1 2 3 25 25 H 1.08999 * 109.46615 * 149.69475 * 1 2 3 26 26 H 1.08994 * 109.47091 * 29.69126 * 1 2 3 27 27 H 1.08002 * 125.65007 * 359.97189 * 3 2 1 28 28 H 1.07996 * 125.99105 * 179.72455 * 5 4 3 29 29 H 1.08999 * 109.47154 * 214.95433 * 7 6 5 30 30 H 1.09003 * 109.47164 * 334.95965 * 7 6 5 31 31 H 0.97001 * 119.99914 * 359.97438 * 8 7 6 32 32 H 0.97001 * 120.00234 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.46628 * 299.99603 * 12 11 9 34 34 H 1.08996 * 109.47168 * 60.00092 * 12 11 9 35 35 H 1.09000 * 109.46807 * 69.36943 * 14 13 12 36 36 H 1.09000 * 109.47124 * 189.37308 * 14 13 12 37 37 H 1.09001 * 109.47127 * 309.37159 * 14 13 12 38 38 H 1.08995 * 109.47358 * 59.99841 * 15 13 12 39 39 H 1.09000 * 109.47587 * 179.97438 * 15 13 12 40 40 H 1.09003 * 109.47485 * 299.99741 * 15 13 12 41 41 H 0.97003 * 119.99771 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6904 0.0037 5 6 3.5461 -0.6504 -0.0035 6 6 2.2773 -1.1018 -0.0060 7 6 1.8365 -2.5428 -0.0132 8 7 1.5793 -2.9817 1.3607 9 6 1.1708 -4.2436 1.5996 10 8 1.0162 -5.0179 0.6751 11 7 0.9347 -4.6475 2.8636 12 6 0.4912 -6.0194 3.1234 13 6 0.2966 -6.2161 4.6282 14 6 1.6210 -5.9628 5.3512 15 6 -0.7592 -5.2335 5.1387 16 6 -0.1590 -7.6276 4.8955 17 1 -0.2752 -8.3217 4.0764 18 6 -0.4276 -8.0325 6.1858 19 7 -0.5555 -9.3124 6.4601 20 14 -0.6100 -6.7633 7.5442 21 1 -2.0030 -6.2488 7.5572 22 1 -0.3024 -7.3924 8.8538 23 1 0.3304 -5.6400 7.3017 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3632 -0.8873 -0.5186 26 1 -0.3633 0.8927 -0.5090 27 1 1.9334 2.1145 -0.0004 28 1 4.4369 -1.2609 -0.0068 29 1 0.9248 -2.6409 -0.6026 30 1 2.6206 -3.1604 -0.4511 31 1 1.7030 -2.3641 2.0984 32 1 1.0591 -4.0301 3.6013 33 1 -0.4526 -6.1997 2.6087 34 1 1.2432 -6.7194 2.7594 35 1 1.8671 -4.9023 5.2976 36 1 1.5281 -6.2620 6.3952 37 1 2.4114 -6.5436 4.8757 38 1 -1.7027 -5.4140 4.6237 39 1 -0.8982 -5.3740 6.2106 40 1 -0.4292 -4.2128 4.9454 41 1 -0.7441 -9.5973 7.3680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868696519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:26 Heat of formation + Delta-G solvation = 23.370197 kcal Electronic energy + Delta-G solvation = -21860.302023 eV Core-core repulsion = 18583.252451 eV Total energy + Delta-G solvation = -3277.049572 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 6.42 seconds Orbital eigenvalues (eV) -43.09294 -41.02999 -38.56063 -36.01499 -34.99462 -34.83721 -33.43664 -31.32350 -28.03632 -27.86041 -27.76160 -27.06206 -25.96515 -22.41377 -22.05531 -21.18664 -20.89829 -19.54965 -18.05920 -17.96148 -17.26503 -17.04680 -16.72839 -16.44529 -15.61437 -15.47515 -15.27004 -14.96681 -14.74480 -14.57250 -14.35322 -13.97646 -13.89484 -13.78004 -13.74511 -13.72093 -13.22984 -12.89250 -12.38050 -12.13054 -11.94625 -11.75097 -11.43462 -11.04963 -10.99691 -10.60928 -10.55443 -10.39487 -10.36005 -9.72249 -9.47789 -8.29219 -6.30957 0.83328 1.37652 1.38317 1.51904 1.80131 1.92953 2.19084 2.22068 2.35752 3.06899 3.42517 3.53889 3.89387 3.97247 4.09117 4.09667 4.36042 4.38075 4.42825 4.47398 4.61120 4.73846 4.77153 4.80145 4.85744 4.87337 4.96628 5.07913 5.20112 5.34805 5.39442 5.45151 5.57734 5.69659 5.74015 5.81208 6.01449 6.25861 6.32423 6.73757 7.06965 7.12674 7.33952 7.61114 8.88107 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.003359 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.239439 B = 8334.748701 C = 8581.613991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.452 5.452 3 C 0.195 3.805 4 N -0.536 5.536 5 C -0.017 4.017 6 C -0.050 4.050 7 C 0.225 3.775 8 N -0.729 5.729 9 C 0.701 3.299 10 O -0.638 6.638 11 N -0.725 5.725 12 C 0.177 3.823 13 C 0.028 3.972 14 C -0.140 4.140 15 C -0.145 4.145 16 C -0.519 4.519 17 H 0.028 0.972 18 C 0.016 3.984 19 N -0.947 5.947 20 Si 0.946 3.054 21 H -0.281 1.281 22 H -0.316 1.316 23 H -0.204 1.204 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.242 0.758 28 H 0.174 0.826 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.407 0.593 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.047 0.953 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 25.162 -9.569 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.133 5.133 3 C -0.087 4.087 4 N -0.255 5.255 5 C -0.166 4.166 6 C -0.165 4.165 7 C 0.100 3.900 8 N -0.387 5.387 9 C 0.401 3.599 10 O -0.520 6.520 11 N -0.381 5.381 12 C 0.053 3.947 13 C 0.027 3.973 14 C -0.197 4.197 15 C -0.202 4.202 16 C -0.557 4.557 17 H 0.046 0.954 18 C -0.181 4.181 19 N -0.587 5.587 20 Si 0.775 3.225 21 H -0.208 1.208 22 H -0.246 1.246 23 H -0.128 1.128 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.135 0.865 27 H 0.258 0.742 28 H 0.191 0.809 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.243 0.757 32 H 0.244 0.756 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.713 24.834 -10.301 27.022 hybrid contribution -0.909 -0.590 1.254 1.657 sum 1.804 24.244 -9.047 25.940 Atomic orbital electron populations 1.22357 0.74333 1.06134 1.04960 1.45532 1.08919 1.05922 1.52964 1.25722 0.84940 0.94851 1.03203 1.70326 1.21331 1.12262 1.21571 1.22399 0.96475 0.91315 1.06436 1.20987 0.91485 0.89380 1.14645 1.19217 1.01306 0.86900 0.82546 1.45011 1.73071 1.10922 1.09654 1.16074 0.78072 0.82420 0.83328 1.90897 1.61380 1.55141 1.44539 1.45109 1.72069 1.14610 1.06327 1.20876 0.97417 0.80442 0.95987 1.18652 0.93653 0.93741 0.91242 1.22209 0.97280 1.00127 1.00090 1.22269 0.99655 0.98985 0.99259 1.21053 1.45611 0.95930 0.93090 0.95376 1.25871 0.94193 0.96813 1.01246 1.70119 1.50300 1.17068 1.21172 0.86319 0.79709 0.80319 0.76148 1.20827 1.24609 1.12760 0.89338 0.89798 0.86491 0.74236 0.80853 0.91106 0.89842 0.75667 0.75562 0.94034 0.94437 0.91626 0.93712 0.94165 0.93421 0.94791 0.90776 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 11.01 127.77 1.41 1.78 16 2 N -0.45 -5.69 3.15 -537.90 -1.70 -7.39 16 3 C 0.20 2.64 12.56 180.26 2.26 4.90 16 4 N -0.54 -11.11 11.25 -200.31 -2.25 -13.36 16 5 C -0.02 -0.33 11.79 83.52 0.98 0.66 16 6 C -0.05 -0.84 6.32 40.95 0.26 -0.58 16 7 C 0.23 4.28 5.91 85.63 0.51 4.79 16 8 N -0.73 -15.07 5.55 -482.30 -2.68 -17.74 16 9 C 0.70 21.23 8.57 179.06 1.53 22.76 16 10 O -0.64 -25.44 16.34 -3.97 -0.06 -25.51 16 11 N -0.73 -21.45 5.01 -478.54 -2.40 -23.85 16 12 C 0.18 6.97 4.49 86.38 0.39 7.36 16 13 C 0.03 1.18 0.50 -52.93 -0.03 1.15 16 14 C -0.14 -5.21 7.53 71.98 0.54 -4.67 16 15 C -0.14 -5.23 7.52 71.98 0.54 -4.68 16 16 C -0.52 -28.43 8.62 25.60 0.22 -28.21 16 17 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 18 C 0.02 0.90 5.32 84.65 0.45 1.36 16 19 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 20 Si 0.95 42.23 22.79 68.60 1.56 43.79 16 21 H -0.28 -12.24 7.10 99.48 0.71 -11.54 16 22 H -0.32 -14.66 7.11 99.48 0.71 -13.95 16 23 H -0.20 -7.63 4.65 99.48 0.46 -7.16 16 24 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.08 0.62 7.30 -2.39 -0.02 0.60 16 26 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.24 1.14 8.06 -2.91 -0.02 1.11 16 28 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 29 H 0.07 1.37 7.38 -2.39 -0.02 1.36 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.41 6.52 8.48 -92.71 -0.79 5.73 16 32 H 0.41 9.44 6.27 -92.71 -0.58 8.86 16 33 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.87 7.13 -2.39 -0.02 1.85 16 36 H 0.04 1.77 4.30 -2.39 -0.01 1.76 16 37 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.03 1.29 2.25 -2.39 -0.01 1.28 16 40 H 0.07 2.00 6.86 -2.39 -0.02 1.98 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -76.99 326.41 1.29 -75.70 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -0.55 Total: 20.12 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 9.07 Total: 6.62 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -8.72 Total: -120.72 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.06 Total: -25.51 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.56 Total: 43.79 kcal Total: -76.99 1.29 -75.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868696519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.071 kcal (2) G-P(sol) polarization free energy of solvation -76.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.42 seconds