Wall clock time and date at job start Tue Mar 31 2020 03:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47394 * 2 1 4 4 N 1.46504 * 109.47498 * 179.97438 * 3 2 1 5 5 C 1.35312 * 125.86704 * 125.00084 * 4 3 2 6 6 C 1.35348 * 106.17447 * 180.02562 * 5 4 3 7 7 C 1.50701 * 126.75519 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.47086 * 95.00021 * 7 6 5 9 9 C 1.48532 * 111.00103 * 52.60393 * 8 7 6 10 10 C 1.54937 * 103.22905 * 159.72235 * 9 8 7 11 11 C 1.54602 * 102.91914 * 322.58903 * 10 9 8 12 12 O 1.42906 * 110.30740 * 263.04174 * 11 10 9 13 13 C 1.50692 * 110.30787 * 140.87429 * 11 10 9 14 14 H 1.08001 * 120.00231 * 3.70166 * 13 11 10 15 15 C 1.37884 * 120.00133 * 183.70504 * 13 11 10 16 16 N 1.31512 * 120.00102 * 186.05546 * 15 13 11 17 17 Si 1.86800 * 119.99478 * 6.06044 * 15 13 11 18 18 H 1.48500 * 109.47667 * 84.77498 * 17 15 13 19 19 H 1.48508 * 109.46674 * 204.77459 * 17 15 13 20 20 H 1.48502 * 109.47143 * 324.76661 * 17 15 13 21 21 C 1.47899 * 111.00161 * 170.00178 * 8 7 6 22 22 N 1.33770 * 106.49447 * 0.26055 * 6 5 4 23 23 N 1.28627 * 108.88974 * 359.56335 * 22 6 5 24 24 H 1.08996 * 109.47424 * 300.00093 * 1 2 3 25 25 H 1.09001 * 109.46959 * 59.99954 * 1 2 3 26 26 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47424 * 239.99907 * 2 1 3 28 28 H 1.09006 * 109.47206 * 119.99640 * 2 1 3 29 29 H 1.09006 * 109.47466 * 59.99567 * 3 2 1 30 30 H 1.09001 * 109.47105 * 299.99957 * 3 2 1 31 31 H 1.07993 * 126.91629 * 0.05467 * 5 4 3 32 32 H 1.09001 * 109.46872 * 334.99935 * 7 6 5 33 33 H 1.08992 * 109.47265 * 214.99969 * 7 6 5 34 34 H 1.09007 * 110.66428 * 41.28576 * 9 8 7 35 35 H 1.08995 * 110.66942 * 278.16111 * 9 8 7 36 36 H 1.08997 * 110.72605 * 204.23286 * 10 9 8 37 37 H 1.09000 * 110.87559 * 81.01587 * 10 9 8 38 38 H 0.96698 * 113.99296 * 295.71829 * 12 11 10 39 39 H 0.97001 * 119.99341 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.91401 * 94.80118 * 21 8 7 41 41 H 1.09005 * 109.91625 * 333.51449 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2982 2.0713 -0.8974 6 6 5.5724 1.8093 -0.5235 7 6 6.8286 2.2863 -1.2058 8 7 7.3038 3.5141 -0.5540 9 6 7.4340 3.3218 0.9131 10 6 8.4020 4.4556 1.3348 11 6 9.3989 4.5157 0.1546 12 8 10.5757 3.7649 0.4607 13 6 9.7560 5.9464 -0.1560 14 1 9.3703 6.7452 0.4600 15 6 10.5752 6.2357 -1.2267 16 7 10.9836 7.4695 -1.4278 17 14 11.1048 4.8749 -2.3917 18 1 10.0574 4.6718 -3.4246 19 1 12.3811 5.2550 -3.0491 20 1 11.2974 3.6162 -1.6276 21 6 8.6539 3.8806 -1.0339 22 7 5.4973 1.0383 0.5671 23 7 4.2589 0.8439 0.8552 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9789 2.6635 -1.7421 32 1 6.6168 2.4907 -2.2553 33 1 7.5963 1.5161 -1.1334 34 1 7.8644 2.3455 1.1364 35 1 6.4677 3.4386 1.4036 36 1 8.9160 4.1993 2.2612 37 1 7.8704 5.4014 1.4392 38 1 11.0860 4.1186 1.2020 39 1 11.5602 7.6728 -2.1808 40 1 8.5755 4.5991 -1.8499 41 1 9.1831 2.9890 -1.3704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877606303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:22 Heat of formation + Delta-G solvation = 61.319467 kcal Electronic energy + Delta-G solvation = -22201.004498 eV Core-core repulsion = 18925.600530 eV Total energy + Delta-G solvation = -3275.403968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.23687 -38.63222 -36.36946 -35.10709 -32.78978 -32.30811 -31.90893 -29.67618 -28.26889 -27.37466 -25.80770 -23.76398 -22.91077 -22.07604 -21.02630 -20.24265 -19.48306 -17.43589 -16.98357 -16.61039 -15.63795 -15.37024 -15.23778 -14.89095 -14.45772 -14.05545 -13.98896 -13.65846 -13.04805 -12.96997 -12.76502 -12.53740 -12.40378 -12.04124 -11.91756 -11.72579 -11.52595 -11.35602 -11.23092 -11.01016 -10.71467 -10.61670 -10.24513 -10.06590 -10.02548 -9.91385 -9.20063 -8.93730 -8.62403 -8.29321 -7.83306 -6.11620 -4.19781 1.60558 2.24586 2.57817 3.35098 3.45993 3.66539 4.05593 4.27014 4.38131 4.50017 4.59134 4.67541 4.79283 4.86642 4.94106 5.10106 5.14703 5.20011 5.41605 5.43196 5.48033 5.53786 5.63067 5.73161 5.86513 5.94069 6.05365 6.11413 6.17937 6.26014 6.35633 6.55639 6.63165 6.74808 6.98187 7.18523 7.46196 7.61498 7.66672 8.32272 8.56228 8.87502 9.05524 9.53186 10.99299 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037556 B = 0.003659 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.379848 B = 7650.409548 C = 7788.434231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.116 3.884 4 N -0.297 5.297 5 C -0.036 4.036 6 C -0.006 4.006 7 C 0.127 3.873 8 N -0.507 5.507 9 C 0.047 3.953 10 C -0.135 4.135 11 C 0.212 3.788 12 O -0.581 6.581 13 C -0.542 4.542 14 H 0.076 0.924 15 C 0.084 3.916 16 N -0.891 5.891 17 Si 0.869 3.131 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.230 1.230 21 C 0.044 3.956 22 N -0.261 5.261 23 N -0.090 5.090 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.190 0.810 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.364 0.636 39 H 0.265 0.735 40 H 0.091 0.909 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.094 -12.794 0.108 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.005 4.005 4 N -0.090 5.090 5 C -0.187 4.187 6 C -0.144 4.144 7 C -0.003 4.003 8 N -0.232 5.232 9 C -0.081 4.081 10 C -0.174 4.174 11 C 0.173 3.827 12 O -0.387 6.387 13 C -0.580 4.580 14 H 0.094 0.906 15 C -0.120 4.120 16 N -0.528 5.528 17 Si 0.697 3.303 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.153 1.153 21 C -0.083 4.083 22 N -0.128 5.128 23 N -0.069 5.069 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.207 0.793 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.211 0.789 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.579 -13.531 0.636 23.808 hybrid contribution 0.769 -0.028 -1.125 1.363 sum -18.810 -13.559 -0.488 23.193 Atomic orbital electron populations 1.21702 0.93920 1.02770 1.02354 1.21820 0.96900 0.94649 1.04200 1.22172 0.73043 1.00011 1.05248 1.47360 1.08908 1.33846 1.18935 1.23379 0.90806 1.04546 0.99961 1.21863 0.95266 1.00875 0.96422 1.20540 0.90700 0.91832 0.97250 1.64983 1.25129 1.28455 1.04618 1.23075 0.98765 0.98022 0.88236 1.23070 0.97716 0.97986 0.98589 1.19821 0.82449 0.90759 0.89710 1.86467 1.39832 1.57315 1.55131 1.21364 1.31297 0.90611 1.14710 0.90557 1.25002 0.94309 0.95346 0.97344 1.69947 1.33919 1.19178 1.29772 0.87123 0.77259 0.85189 0.80752 1.20896 1.22598 1.15301 1.23287 0.86728 0.99006 0.99295 1.75092 1.09242 1.15154 1.13355 1.78223 0.96421 1.17589 1.14689 0.92060 0.92244 0.91707 0.91120 0.89996 0.88396 0.87731 0.79286 0.89217 0.93005 0.93624 0.91920 0.92160 0.90741 0.78882 0.92564 0.89048 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.14 -0.84 6.06 -26.74 -0.16 -1.00 16 3 C 0.12 0.78 6.45 -4.04 -0.03 0.75 16 4 N -0.30 -3.42 3.44 -61.26 -0.21 -3.63 16 5 C -0.04 -0.44 11.50 -17.05 -0.20 -0.63 16 6 C -0.01 -0.10 5.66 -82.78 -0.47 -0.57 16 7 C 0.13 2.09 5.60 -4.97 -0.03 2.06 16 8 N -0.51 -10.00 5.39 -231.89 -1.25 -11.25 16 9 C 0.05 0.92 5.22 -1.90 -0.01 0.91 16 10 C -0.14 -2.85 6.34 -24.87 -0.16 -3.01 16 11 C 0.21 5.06 0.84 -90.42 -0.08 4.98 16 12 O -0.58 -13.57 10.44 -35.23 -0.37 -13.94 16 13 C -0.54 -15.09 8.67 -34.44 -0.30 -15.39 16 14 H 0.08 2.30 7.82 -52.49 -0.41 1.89 16 15 C 0.08 2.41 5.39 -17.82 -0.10 2.32 16 16 N -0.89 -27.07 13.96 55.43 0.77 -26.29 16 17 Si 0.87 21.86 23.84 -169.99 -4.05 17.81 16 18 H -0.28 -6.87 6.95 56.52 0.39 -6.47 16 19 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 20 H -0.23 -5.74 5.42 56.52 0.31 -5.43 16 21 C 0.04 0.99 4.12 -2.76 -0.01 0.98 16 22 N -0.26 -4.45 11.88 33.29 0.40 -4.06 16 23 N -0.09 -1.35 12.91 60.35 0.78 -0.57 16 24 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.42 8.07 -51.93 -0.42 0.01 16 31 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 34 H 0.05 0.92 8.02 -51.92 -0.42 0.51 16 35 H 0.06 1.21 7.85 -51.93 -0.41 0.80 16 36 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.07 1.62 7.70 -51.93 -0.40 1.22 16 38 H 0.36 7.46 9.07 45.56 0.41 7.87 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.09 2.20 5.80 -51.92 -0.30 1.90 16 41 H 0.04 0.87 6.53 -51.93 -0.34 0.53 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -33.98 327.18 -5.89 -39.87 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.73 Total: 5.95 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.16 Total: -8.83 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.49 Total: -45.80 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.37 Total: -13.94 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.05 Total: 17.81 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.98 -5.89 -39.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877606303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.190 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds