Wall clock time and date at job start Tue Mar 31 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47394 * 2 1 4 4 N 1.46504 * 109.47498 * 179.97438 * 3 2 1 5 5 C 1.35312 * 125.86704 * 125.00084 * 4 3 2 6 6 C 1.35348 * 106.17447 * 180.02562 * 5 4 3 7 7 C 1.50701 * 126.75519 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.47086 * 95.00021 * 7 6 5 9 9 C 1.48532 * 111.00103 * 52.60393 * 8 7 6 10 10 C 1.54937 * 103.22905 * 159.72235 * 9 8 7 11 11 C 1.54602 * 102.91914 * 322.58903 * 10 9 8 12 12 O 1.42906 * 110.30740 * 263.04174 * 11 10 9 13 13 C 1.50692 * 110.30787 * 140.87429 * 11 10 9 14 14 H 1.08001 * 120.00231 * 3.70166 * 13 11 10 15 15 C 1.37884 * 120.00133 * 183.70504 * 13 11 10 16 16 N 1.31512 * 120.00102 * 186.05546 * 15 13 11 17 17 Si 1.86800 * 119.99478 * 6.06044 * 15 13 11 18 18 H 1.48500 * 109.47667 * 84.77498 * 17 15 13 19 19 H 1.48508 * 109.46674 * 204.77459 * 17 15 13 20 20 H 1.48502 * 109.47143 * 324.76661 * 17 15 13 21 21 C 1.47899 * 111.00161 * 170.00178 * 8 7 6 22 22 N 1.33770 * 106.49447 * 0.26055 * 6 5 4 23 23 N 1.28627 * 108.88974 * 359.56335 * 22 6 5 24 24 H 1.08996 * 109.47424 * 300.00093 * 1 2 3 25 25 H 1.09001 * 109.46959 * 59.99954 * 1 2 3 26 26 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47424 * 239.99907 * 2 1 3 28 28 H 1.09006 * 109.47206 * 119.99640 * 2 1 3 29 29 H 1.09006 * 109.47466 * 59.99567 * 3 2 1 30 30 H 1.09001 * 109.47105 * 299.99957 * 3 2 1 31 31 H 1.07993 * 126.91629 * 0.05467 * 5 4 3 32 32 H 1.09001 * 109.46872 * 334.99935 * 7 6 5 33 33 H 1.08992 * 109.47265 * 214.99969 * 7 6 5 34 34 H 1.09007 * 110.66428 * 41.28576 * 9 8 7 35 35 H 1.08995 * 110.66942 * 278.16111 * 9 8 7 36 36 H 1.08997 * 110.72605 * 204.23286 * 10 9 8 37 37 H 1.09000 * 110.87559 * 81.01587 * 10 9 8 38 38 H 0.96698 * 113.99296 * 295.71829 * 12 11 10 39 39 H 0.97001 * 119.99341 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.91401 * 94.80118 * 21 8 7 41 41 H 1.09005 * 109.91625 * 333.51449 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2982 2.0713 -0.8974 6 6 5.5724 1.8093 -0.5235 7 6 6.8286 2.2863 -1.2058 8 7 7.3038 3.5141 -0.5540 9 6 7.4340 3.3218 0.9131 10 6 8.4020 4.4556 1.3348 11 6 9.3989 4.5157 0.1546 12 8 10.5757 3.7649 0.4607 13 6 9.7560 5.9464 -0.1560 14 1 9.3703 6.7452 0.4600 15 6 10.5752 6.2357 -1.2267 16 7 10.9836 7.4695 -1.4278 17 14 11.1048 4.8749 -2.3917 18 1 10.0574 4.6718 -3.4246 19 1 12.3811 5.2550 -3.0491 20 1 11.2974 3.6162 -1.6276 21 6 8.6539 3.8806 -1.0339 22 7 5.4973 1.0383 0.5671 23 7 4.2589 0.8439 0.8552 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9789 2.6635 -1.7421 32 1 6.6168 2.4907 -2.2553 33 1 7.5963 1.5161 -1.1334 34 1 7.8644 2.3455 1.1364 35 1 6.4677 3.4386 1.4036 36 1 8.9160 4.1993 2.2612 37 1 7.8704 5.4014 1.4392 38 1 11.0860 4.1186 1.2020 39 1 11.5602 7.6728 -2.1808 40 1 8.5755 4.5991 -1.8499 41 1 9.1831 2.9890 -1.3704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877606303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:21 Heat of formation + Delta-G solvation = 33.266474 kcal Electronic energy + Delta-G solvation = -22202.220967 eV Core-core repulsion = 18925.600530 eV Total energy + Delta-G solvation = -3276.620437 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.23662 -40.32189 -37.27865 -36.56356 -34.47477 -33.66866 -33.12840 -31.11013 -30.09269 -28.05790 -27.29545 -25.58940 -23.57868 -23.24898 -22.18022 -21.48285 -21.24657 -19.07197 -18.28694 -17.60410 -17.14513 -16.93076 -16.39360 -16.06200 -15.82109 -15.46770 -15.38175 -14.76999 -14.45860 -14.42791 -14.14985 -13.66465 -13.52059 -13.44169 -13.23357 -12.91775 -12.75555 -12.53812 -12.39028 -12.29786 -12.13459 -11.95096 -11.87057 -11.83881 -11.61813 -10.98987 -10.95135 -10.77338 -10.33803 -10.15187 -9.38555 -8.33683 -6.45534 0.66450 1.36059 1.39767 1.45528 1.51732 1.65787 2.40423 2.99971 3.10420 3.35134 3.59134 3.63616 3.82814 3.84781 4.04482 4.13009 4.20317 4.23629 4.33936 4.39747 4.42585 4.47847 4.54691 4.65011 4.70015 4.76301 4.88621 4.94689 5.01996 5.08481 5.10298 5.19977 5.26822 5.35733 5.36606 5.60447 5.72379 5.85637 6.07294 6.12643 6.64336 7.18170 7.34852 7.52324 8.80791 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037556 B = 0.003659 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.379848 B = 7650.409548 C = 7788.434231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.106 3.894 4 N -0.285 5.285 5 C -0.016 4.016 6 C -0.035 4.035 7 C 0.129 3.871 8 N -0.510 5.510 9 C 0.064 3.936 10 C -0.133 4.133 11 C 0.209 3.791 12 O -0.585 6.585 13 C -0.543 4.543 14 H 0.038 0.962 15 C 0.035 3.965 16 N -0.936 5.936 17 Si 0.930 3.070 18 H -0.267 1.267 19 H -0.303 1.303 20 H -0.225 1.225 21 C 0.049 3.951 22 N -0.300 5.300 23 N -0.114 5.114 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.230 0.770 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.376 0.624 39 H 0.267 0.733 40 H 0.075 0.925 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.156 -14.142 -1.009 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.013 4.013 4 N -0.079 5.079 5 C -0.168 4.168 6 C -0.174 4.174 7 C -0.001 4.001 8 N -0.235 5.235 9 C -0.064 4.064 10 C -0.171 4.171 11 C 0.169 3.831 12 O -0.392 6.392 13 C -0.581 4.581 14 H 0.056 0.944 15 C -0.165 4.165 16 N -0.576 5.576 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.230 1.230 20 H -0.147 1.147 21 C -0.078 4.078 22 N -0.166 5.166 23 N -0.093 5.093 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.246 0.754 32 H 0.133 0.867 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.224 0.776 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.678 -14.904 -0.449 26.311 hybrid contribution 1.297 0.435 -0.707 1.540 sum -20.381 -14.469 -1.156 25.021 Atomic orbital electron populations 1.21675 0.92103 1.03133 1.03315 1.21759 0.98316 0.94105 1.02870 1.22677 0.70299 1.00781 1.07578 1.47760 1.10415 1.32117 1.17638 1.23906 0.89684 1.03125 1.00082 1.21834 0.96121 1.02342 0.97074 1.20576 0.91053 0.90011 0.98411 1.64929 1.23169 1.30805 1.04569 1.22880 0.98311 0.96802 0.88413 1.23005 0.97507 0.98172 0.98401 1.19779 0.83163 0.88633 0.91555 1.86422 1.39911 1.56966 1.55924 1.21575 1.30606 0.92030 1.13848 0.94362 1.25762 0.94489 0.97297 0.98944 1.70068 1.35365 1.21307 1.30820 0.86166 0.76900 0.82373 0.79034 1.19210 1.23019 1.14715 1.23045 0.88151 0.98525 0.98113 1.75029 1.10518 1.16477 1.14613 1.78144 0.96279 1.18875 1.15965 0.91548 0.90800 0.91717 0.91734 0.92111 0.87325 0.84160 0.75392 0.86669 0.93928 0.94102 0.91465 0.90658 0.91979 0.77591 0.92405 0.90663 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.91 71.98 0.71 -0.08 16 2 C -0.13 -1.34 6.06 30.59 0.19 -1.16 16 3 C 0.11 1.07 6.45 86.38 0.56 1.62 16 4 N -0.29 -5.83 3.44 -347.73 -1.20 -7.03 16 5 C -0.02 -0.33 11.50 83.49 0.96 0.63 16 6 C -0.03 -1.01 5.66 41.60 0.24 -0.77 16 7 C 0.13 3.97 5.60 85.56 0.48 4.45 16 8 N -0.51 -19.26 5.39 -887.56 -4.78 -24.05 16 9 C 0.06 2.43 5.22 86.65 0.45 2.88 16 10 C -0.13 -5.52 6.34 31.80 0.20 -5.32 16 11 C 0.21 9.83 0.84 -10.66 -0.01 9.82 16 12 O -0.58 -26.56 10.44 -148.98 -1.56 -28.12 16 13 C -0.54 -30.66 8.67 25.60 0.22 -30.44 16 14 H 0.04 2.40 7.82 -2.91 -0.02 2.37 16 15 C 0.03 2.02 5.39 84.66 0.46 2.47 16 16 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 17 Si 0.93 45.05 23.84 68.60 1.64 46.69 16 18 H -0.27 -12.14 6.95 99.48 0.69 -11.45 16 19 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 20 H -0.22 -10.60 5.42 99.48 0.54 -10.06 16 21 C 0.05 2.16 4.12 86.44 0.36 2.52 16 22 N -0.30 -9.93 11.88 -48.60 -0.58 -10.51 16 23 N -0.11 -3.28 12.91 37.02 0.48 -2.80 16 24 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.88 8.12 -2.38 -0.02 0.86 16 29 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.14 0.46 8.07 -2.39 -0.02 0.44 16 31 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.04 1.39 7.81 -2.39 -0.02 1.38 16 34 H 0.04 1.61 8.02 -2.38 -0.02 1.59 16 35 H 0.07 2.52 7.85 -2.39 -0.02 2.50 16 36 H 0.07 2.86 8.08 -2.39 -0.02 2.84 16 37 H 0.06 2.72 7.70 -2.39 -0.02 2.70 16 38 H 0.38 15.00 9.07 -74.06 -0.67 14.33 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.08 3.53 5.80 -2.38 -0.01 3.51 16 41 H 0.04 1.77 6.53 -2.38 -0.02 1.76 16 Total: -1.00 -74.60 327.18 -0.72 -75.32 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.17 Total: 21.57 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.81 Total: -13.38 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -5.78 Total: -102.07 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -1.56 Total: -28.12 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.64 Total: 46.69 kcal Total: -74.60 -0.72 -75.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877606303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.583 kcal (2) G-P(sol) polarization free energy of solvation -74.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds