Wall clock time and date at job start Tue Mar 31 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.35312 * 125.86762 * 125.00180 * 4 3 2 6 6 C 1.35350 * 106.17360 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.74799 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47311 * 95.00364 * 7 6 5 9 9 C 1.47439 * 111.00346 * 69.86474 * 8 7 6 10 10 C 1.54327 * 107.23112 * 123.26200 * 9 8 7 11 11 C 1.55146 * 103.01630 * 22.28515 * 10 9 8 12 12 O 1.42898 * 110.98865 * 82.47769 * 11 10 9 13 13 C 1.50700 * 110.98776 * 206.25100 * 11 10 9 14 14 H 1.08004 * 119.99763 * 118.54961 * 13 11 10 15 15 C 1.37872 * 120.00314 * 298.55094 * 13 11 10 16 16 N 1.31514 * 120.00006 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00032 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46807 * 89.99522 * 17 15 13 19 19 H 1.48495 * 109.47371 * 209.99979 * 17 15 13 20 20 H 1.48497 * 109.46873 * 330.00000 * 17 15 13 21 21 C 1.47845 * 111.00521 * 190.71842 * 8 7 6 22 22 N 1.33765 * 106.49812 * 359.97438 * 6 5 4 23 23 N 1.28639 * 108.88519 * 359.73582 * 22 6 5 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 27 27 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 28 28 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.08002 * 126.91372 * 0.02562 * 5 4 3 32 32 H 1.09001 * 109.47346 * 214.99448 * 7 6 5 33 33 H 1.09003 * 109.47717 * 335.00133 * 7 6 5 34 34 H 1.09001 * 109.89416 * 242.66777 * 9 8 7 35 35 H 1.08998 * 109.88697 * 3.86371 * 9 8 7 36 36 H 1.08995 * 110.70315 * 140.66943 * 10 9 8 37 37 H 1.08999 * 110.70530 * 263.73147 * 10 9 8 38 38 H 0.96699 * 114.00454 * 61.44975 * 12 11 10 39 39 H 0.97002 * 119.99933 * 180.02562 * 16 15 13 40 40 H 1.09008 * 110.36734 * 332.45951 * 21 8 7 41 41 H 1.08997 * 110.37872 * 94.79447 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2975 2.0716 -0.8991 6 6 5.5720 1.8103 -0.5257 7 6 6.8275 2.2879 -1.2087 8 7 7.3024 3.5160 -0.5573 9 6 7.8207 3.2314 0.7933 10 6 9.2763 3.7419 0.8413 11 6 9.3148 4.7956 -0.2968 12 8 8.8014 6.0517 0.1511 13 6 10.7111 4.9500 -0.8423 14 1 10.9142 4.7227 -1.8785 15 6 11.7293 5.3813 -0.0188 16 7 11.4819 5.6585 1.2428 17 14 13.4602 5.5719 -0.6950 18 1 13.6371 6.9493 -1.2210 19 1 14.4450 5.3256 0.3888 20 1 13.6743 4.5925 -1.7904 21 6 8.3757 4.1546 -1.3486 22 7 5.4978 1.0448 0.5688 23 7 4.2595 0.8498 0.8574 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.9775 2.6638 -1.7436 32 1 7.5958 1.5181 -1.1364 33 1 6.6152 2.4920 -2.2582 34 1 7.2201 3.7530 1.5385 35 1 7.7979 2.1579 0.9806 36 1 9.4902 4.2062 1.8039 37 1 9.9761 2.9302 0.6425 38 1 9.3034 6.4453 0.8778 39 1 12.1982 5.9623 1.8220 40 1 8.9133 3.4067 -1.9317 41 1 7.9601 4.9206 -2.0033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877606304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:24 Heat of formation + Delta-G solvation = 25.087781 kcal Electronic energy + Delta-G solvation = -21962.589882 eV Core-core repulsion = 18685.614790 eV Total energy + Delta-G solvation = -3276.975092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.17599 -40.06073 -37.14604 -36.43374 -34.15874 -33.58601 -33.00045 -30.78295 -29.86608 -28.03757 -27.30680 -25.73480 -23.55678 -22.98744 -21.86963 -21.37580 -21.17310 -19.01387 -18.17367 -17.44737 -16.96818 -16.82719 -16.23514 -16.15583 -15.74879 -15.63478 -15.17493 -14.48676 -14.33953 -14.13284 -13.83142 -13.51072 -13.34038 -13.12949 -12.97987 -12.95322 -12.74236 -12.63653 -12.39372 -12.27852 -12.22945 -12.17360 -11.89869 -11.74185 -11.50117 -11.10480 -10.93299 -10.59299 -10.17499 -10.02977 -9.16794 -8.19111 -6.35243 0.70584 1.42249 1.43504 1.48295 1.53311 1.57090 2.39980 3.05257 3.23950 3.45738 3.62396 3.83905 3.89905 4.03630 4.12142 4.16047 4.24637 4.33269 4.36724 4.48351 4.48894 4.57454 4.66982 4.76402 4.81074 4.94305 4.98428 5.09087 5.10800 5.13363 5.23817 5.29685 5.36592 5.49331 5.55497 5.76591 5.81280 5.97114 6.24362 6.25158 6.71429 7.36164 7.46071 7.57148 8.86278 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.053354 B = 0.003139 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.669443 B = 8918.887138 C = 8953.013916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.106 3.894 4 N -0.286 5.286 5 C -0.018 4.018 6 C -0.030 4.030 7 C 0.135 3.865 8 N -0.524 5.524 9 C 0.064 3.936 10 C -0.136 4.136 11 C 0.234 3.766 12 O -0.587 6.587 13 C -0.558 4.558 14 H 0.060 0.940 15 C 0.027 3.973 16 N -0.914 5.914 17 Si 0.961 3.039 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.268 1.268 21 C 0.068 3.932 22 N -0.305 5.305 23 N -0.119 5.119 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.142 0.858 30 H 0.106 0.894 31 H 0.231 0.769 32 H 0.040 0.960 33 H 0.118 0.882 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.370 0.630 39 H 0.267 0.733 40 H 0.058 0.942 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.295 -8.534 -6.100 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.013 4.013 4 N -0.080 5.080 5 C -0.170 4.170 6 C -0.169 4.169 7 C 0.005 3.995 8 N -0.249 5.249 9 C -0.064 4.064 10 C -0.175 4.175 11 C 0.194 3.806 12 O -0.394 6.394 13 C -0.596 4.596 14 H 0.078 0.922 15 C -0.174 4.174 16 N -0.553 5.553 17 Si 0.787 3.213 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.059 4.059 22 N -0.172 5.172 23 N -0.098 5.098 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.125 0.875 31 H 0.248 0.752 32 H 0.059 0.941 33 H 0.136 0.864 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.218 0.782 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.107 -9.176 -5.097 23.573 hybrid contribution 2.239 0.346 -0.226 2.277 sum -18.868 -8.830 -5.324 21.502 Atomic orbital electron populations 1.21674 0.92038 1.03144 1.03321 1.21761 0.98355 0.94090 1.02840 1.22667 0.70366 1.00787 1.07504 1.47761 1.10392 1.32322 1.17533 1.23909 0.89678 1.03199 1.00261 1.21992 0.96452 1.01756 0.96670 1.20500 0.90809 0.90265 0.97900 1.63544 1.35424 1.23700 1.02217 1.22551 0.94410 0.98376 0.91107 1.23083 0.94121 0.99119 1.01165 1.19798 0.90227 0.80975 0.89575 1.86122 1.58523 1.38094 1.56676 1.21834 0.94240 1.46379 0.97168 0.92175 1.25750 1.02838 0.93834 0.94964 1.69852 1.34391 1.45430 1.05640 0.85510 0.79169 0.78569 0.78073 1.20101 1.20925 1.19265 1.22869 0.90473 0.97003 0.95530 1.74997 1.10542 1.16896 1.14746 1.78128 0.96344 1.19333 1.15970 0.90687 0.91686 0.91631 0.91641 0.92275 0.84043 0.87549 0.75243 0.94145 0.86391 0.93726 0.93065 0.92952 0.93826 0.78150 0.92354 0.92368 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.91 71.98 0.71 -0.18 16 2 C -0.13 -1.49 6.07 30.60 0.19 -1.30 16 3 C 0.11 1.21 6.46 86.38 0.56 1.77 16 4 N -0.29 -6.38 3.44 -347.72 -1.20 -7.57 16 5 C -0.02 -0.41 11.50 83.49 0.96 0.55 16 6 C -0.03 -0.91 6.21 41.60 0.26 -0.65 16 7 C 0.13 4.25 5.11 85.56 0.44 4.69 16 8 N -0.52 -20.66 5.15 -890.10 -4.58 -25.24 16 9 C 0.06 2.80 6.39 86.65 0.55 3.35 16 10 C -0.14 -6.76 5.37 31.78 0.17 -6.59 16 11 C 0.23 11.98 0.87 -10.16 -0.01 11.97 16 12 O -0.59 -31.85 13.16 -148.98 -1.96 -33.81 16 13 C -0.56 -30.31 8.27 25.60 0.21 -30.10 16 14 H 0.06 3.19 7.79 -2.91 -0.02 3.17 16 15 C 0.03 1.43 5.29 84.65 0.45 1.88 16 16 N -0.91 -50.50 10.75 21.45 0.23 -50.27 16 17 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C 0.07 2.93 5.86 86.77 0.51 3.43 16 22 N -0.31 -10.99 11.83 -48.61 -0.57 -11.56 16 23 N -0.12 -3.73 12.92 37.02 0.48 -3.25 16 24 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 29 H 0.14 0.59 8.07 -2.39 -0.02 0.57 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.23 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.04 1.36 7.96 -2.39 -0.02 1.34 16 33 H 0.12 2.90 8.07 -2.39 -0.02 2.88 16 34 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 2.21 6.84 -2.39 -0.02 2.19 16 36 H 0.05 2.81 7.54 -2.39 -0.02 2.79 16 37 H 0.04 2.22 8.04 -2.39 -0.02 2.20 16 38 H 0.37 20.56 7.56 -74.06 -0.56 20.00 16 39 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.06 2.35 7.70 -2.38 -0.02 2.33 16 41 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -69.30 336.45 -0.12 -69.43 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.46 Total: 28.70 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.00 Total: -11.19 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -5.64 Total: -97.90 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.96 Total: -33.81 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -69.30 -0.12 -69.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877606304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.514 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds