Wall clock time and date at job start Tue Mar 31 2020 01:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29949 * 125.30131 * 2 1 4 4 O 1.41881 * 107.41086 * 180.02562 * 3 2 1 5 5 N 1.41876 * 106.38760 * 0.02562 * 4 3 2 6 6 C 1.29956 * 107.41286 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.29937 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46594 * 90.03443 * 7 6 5 9 9 C 1.46900 * 110.99647 * 294.29501 * 8 7 6 10 10 C 1.53242 * 109.33804 * 172.75231 * 9 8 7 11 11 H 1.09009 * 109.62849 * 173.54171 * 10 9 8 12 12 C 1.53005 * 109.78682 * 294.02344 * 10 9 8 13 13 N 1.47070 * 108.52311 * 53.83077 * 10 9 8 14 14 C 1.36939 * 120.88659 * 128.83764 * 13 10 9 15 15 H 1.07997 * 119.99651 * 307.72172 * 14 13 10 16 16 C 1.38812 * 120.00393 * 127.70903 * 14 13 10 17 17 N 1.31624 * 119.99924 * 156.42726 * 16 14 13 18 18 Si 1.86798 * 120.00012 * 336.43646 * 16 14 13 19 19 H 1.48503 * 109.46924 * 95.26930 * 18 16 14 20 20 H 1.48493 * 109.47120 * 215.26759 * 18 16 14 21 21 H 1.48499 * 109.47223 * 335.26959 * 18 16 14 22 22 C 1.47085 * 118.23861 * 308.81363 * 13 10 9 23 23 H 1.08995 * 109.62902 * 291.47968 * 22 13 10 24 24 C 1.53001 * 109.79222 * 170.98975 * 22 13 10 25 25 C 1.46901 * 111.00013 * 169.99747 * 8 7 6 26 26 H 1.09002 * 109.46925 * 269.97682 * 1 2 3 27 27 H 1.08995 * 109.47523 * 29.96768 * 1 2 3 28 28 H 1.08996 * 109.47568 * 149.97515 * 1 2 3 29 29 H 1.08997 * 109.46606 * 210.02556 * 7 6 5 30 30 H 1.08995 * 109.47350 * 330.03124 * 7 6 5 31 31 H 1.09000 * 109.49516 * 292.70905 * 9 8 7 32 32 H 1.08993 * 109.49595 * 52.79153 * 9 8 7 33 33 H 1.08997 * 109.46625 * 179.12804 * 12 10 9 34 34 H 1.08997 * 109.47246 * 299.12914 * 12 10 9 35 35 H 1.09002 * 109.46860 * 59.12916 * 12 10 9 36 36 H 0.96997 * 119.99875 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.46779 * 307.57040 * 24 22 13 38 38 H 1.09006 * 109.47165 * 67.56507 * 24 22 13 39 39 H 1.08989 * 109.47408 * 187.57063 * 24 22 13 40 40 H 1.09005 * 109.48959 * 307.21088 * 25 8 7 41 41 H 1.09005 * 109.49083 * 67.26267 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2579 1.0605 0.0000 4 8 3.6081 0.6247 -0.0006 5 7 3.5709 -0.7936 -0.0016 6 6 2.3212 -1.1498 -0.0010 7 6 1.8208 -2.5714 -0.0022 8 7 1.6586 -3.0345 1.3825 9 6 2.9563 -3.1137 2.0664 10 6 2.7299 -3.4230 3.5501 11 1 3.6889 -3.5960 4.0386 12 6 2.0161 -2.2477 4.2211 13 7 1.8975 -4.6310 3.6539 14 6 2.2785 -5.6814 4.4455 15 1 3.2641 -6.1094 4.3371 16 6 1.3981 -6.1959 5.3873 17 7 1.5379 -7.4340 5.8116 18 14 0.0149 -5.1312 6.0525 19 1 -1.2259 -5.3917 5.2793 20 1 -0.2158 -5.4563 7.4830 21 1 0.3868 -3.6993 5.9241 22 6 0.6444 -4.6808 2.8852 23 1 -0.0660 -3.9637 3.2962 24 6 0.0506 -6.0893 2.9532 25 6 0.9530 -4.3221 1.4277 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3634 -0.8897 -0.5142 29 1 0.8605 -2.6181 -0.5157 30 1 2.5395 -3.2091 -0.5168 31 1 3.5564 -3.9051 1.6174 32 1 3.4777 -2.1616 1.9688 33 1 1.8439 -2.4794 5.2722 34 1 2.6351 -1.3540 4.1428 35 1 1.0607 -2.0725 3.7264 36 1 0.9225 -7.7937 6.4694 37 1 0.8072 -6.8171 2.6599 38 1 -0.2773 -6.2965 3.9719 39 1 -0.8009 -6.1576 2.2764 40 1 0.0214 -4.2462 0.8668 41 1 1.5808 -5.0966 0.9872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878773417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:20 Heat of formation + Delta-G solvation = 107.929208 kcal Electronic energy + Delta-G solvation = -23379.674256 eV Core-core repulsion = 20106.291438 eV Total energy + Delta-G solvation = -3273.382818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 5.61 seconds Orbital eigenvalues (eV) -42.52554 -40.28479 -37.01114 -35.19947 -34.42697 -34.02148 -33.26852 -30.27730 -29.61046 -28.46607 -27.66470 -26.02659 -23.91291 -23.12024 -22.71715 -21.38151 -20.25780 -18.61752 -17.87284 -17.45420 -17.01277 -16.35557 -16.16100 -16.10129 -15.76161 -15.27335 -15.03709 -14.79393 -14.47075 -14.27159 -14.17841 -13.79581 -13.72961 -13.26387 -13.14872 -12.94770 -12.77606 -12.71537 -12.49772 -12.39876 -12.27161 -12.13252 -11.94759 -11.75987 -11.71401 -11.58468 -11.31075 -11.19894 -10.45675 -9.43708 -8.38140 -8.17224 -5.69612 -0.51225 0.96790 1.35446 1.46270 1.58009 1.58771 2.13569 2.46221 2.82322 2.97723 3.08850 3.36371 3.69432 3.95783 4.05688 4.20477 4.25435 4.30806 4.44917 4.50923 4.55125 4.58524 4.63716 4.73966 4.77709 4.80547 4.82855 4.89364 4.94621 4.98291 5.14289 5.21923 5.27841 5.38008 5.52177 5.67230 5.87829 5.94616 6.03171 6.07110 6.32545 7.13893 7.65167 8.23488 8.99720 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.005212 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.351682 B = 5370.444660 C = 5430.340510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.106 3.894 3 N -0.310 5.310 4 O -0.020 6.020 5 N -0.298 5.298 6 C 0.100 3.900 7 C 0.115 3.885 8 N -0.524 5.524 9 C 0.060 3.940 10 C 0.162 3.838 11 H 0.048 0.952 12 C -0.142 4.142 13 N -0.605 5.605 14 C -0.266 4.266 15 H 0.021 0.979 16 C 0.021 3.979 17 N -0.937 5.937 18 Si 0.920 3.080 19 H -0.262 1.262 20 H -0.316 1.316 21 H -0.252 1.252 22 C 0.164 3.836 23 H 0.036 0.964 24 C -0.139 4.139 25 C 0.060 3.940 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.154 0.846 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.263 0.737 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 11.971 -14.529 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 N -0.060 5.060 4 O -0.153 6.153 5 N -0.044 5.044 6 C -0.084 4.084 7 C -0.013 4.013 8 N -0.249 5.249 9 C -0.070 4.070 10 C 0.056 3.944 11 H 0.066 0.934 12 C -0.201 4.201 13 N -0.330 5.330 14 C -0.396 4.396 15 H 0.039 0.961 16 C -0.178 4.178 17 N -0.579 5.579 18 Si 0.748 3.252 19 H -0.188 1.188 20 H -0.245 1.245 21 H -0.176 1.176 22 C 0.059 3.941 23 H 0.054 0.946 24 C -0.197 4.197 25 C -0.068 4.068 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.171 0.829 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.135 0.865 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.764 13.030 -14.200 20.425 hybrid contribution 0.130 -0.952 0.731 1.207 sum -6.634 12.078 -13.469 19.269 Atomic orbital electron populations 1.20855 0.80745 1.06956 1.06216 1.25222 1.02107 0.87537 0.92768 1.79896 0.88611 1.20891 1.16560 1.93357 1.21846 1.14111 1.85959 1.79933 1.19507 0.91080 1.13926 1.24867 0.89109 1.00107 0.94338 1.20999 1.04127 0.84980 0.91223 1.61852 1.20010 1.29915 1.13167 1.22397 0.89992 0.99272 0.95293 1.20797 0.93936 0.86836 0.92866 0.93357 1.22047 1.01332 0.97376 0.99345 1.44512 1.23265 1.14023 1.51188 1.18204 1.00155 1.07904 1.13324 0.96147 1.26272 0.99998 0.95890 0.95660 1.70027 1.40004 1.14862 1.33003 0.86377 0.80864 0.81893 0.76111 1.18762 1.24467 1.17579 1.20832 0.87559 0.95174 0.90561 0.94623 1.21941 0.99924 0.96587 1.01225 1.22594 0.99141 0.87709 0.97372 0.87469 0.88248 0.85709 0.82850 0.91745 0.95907 0.91485 0.95135 0.93095 0.91773 0.92813 0.94055 0.94321 0.90384 0.86501 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.23 71.24 0.73 -0.09 16 2 C 0.11 2.06 7.19 43.49 0.31 2.37 16 3 N -0.31 -8.06 12.98 -47.16 -0.61 -8.67 16 4 O -0.02 -0.61 13.71 70.16 0.96 0.35 16 5 N -0.30 -8.48 12.02 -47.16 -0.57 -9.05 16 6 C 0.10 2.18 5.83 43.49 0.25 2.44 16 7 C 0.12 2.03 5.31 85.56 0.45 2.48 16 8 N -0.52 -13.11 4.12 -899.81 -3.71 -16.82 16 9 C 0.06 1.93 4.87 86.38 0.42 2.35 16 10 C 0.16 6.33 3.31 44.97 0.15 6.48 16 11 H 0.05 2.07 7.95 -2.38 -0.02 2.06 16 12 C -0.14 -5.11 9.10 71.98 0.66 -4.45 16 13 N -0.60 -26.69 1.97 -650.64 -1.28 -27.97 16 14 C -0.27 -14.51 8.73 84.03 0.73 -13.77 16 15 H 0.02 1.30 8.06 -2.91 -0.02 1.28 16 16 C 0.02 1.15 3.87 84.86 0.33 1.48 16 17 N -0.94 -56.04 13.97 21.65 0.30 -55.74 16 18 Si 0.92 43.70 24.77 68.60 1.70 45.40 16 19 H -0.26 -11.53 6.45 99.48 0.64 -10.89 16 20 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 21 H -0.25 -11.57 5.55 99.48 0.55 -11.02 16 22 C 0.16 5.96 2.06 44.96 0.09 6.06 16 23 H 0.04 1.31 6.94 -2.39 -0.02 1.30 16 24 C -0.14 -5.38 7.83 71.98 0.56 -4.82 16 25 C 0.06 1.58 4.91 86.38 0.42 2.01 16 26 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.12 0.39 7.14 -2.39 -0.02 0.37 16 29 H 0.15 1.29 6.96 -2.39 -0.02 1.27 16 30 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 2.14 6.35 -2.39 -0.02 2.13 16 33 H 0.03 1.21 6.72 -2.39 -0.02 1.20 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 2.18 7.10 -2.39 -0.02 2.16 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.04 1.79 7.71 -2.39 -0.02 1.78 16 38 H 0.04 1.73 3.33 -2.38 -0.01 1.72 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 40 H 0.12 2.04 7.99 -2.38 -0.02 2.02 16 41 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -69.70 317.40 2.72 -66.98 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 0.81 Total: 2.98 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.12 Total: 2.53 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -5.87 Total: -118.25 kcal Atomic # 8 Polarization: -0.61 SS G_CDS: 0.96 Total: 0.35 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.70 Total: 45.40 kcal Total: -69.70 2.72 -66.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878773417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.909 kcal (2) G-P(sol) polarization free energy of solvation -69.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.61 seconds