Wall clock time and date at job start Tue Mar 31 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29952 * 125.30756 * 2 1 4 4 O 1.41878 * 107.41589 * 180.02562 * 3 2 1 5 5 N 1.41872 * 106.38591 * 359.77298 * 4 3 2 6 6 C 1.29951 * 107.41733 * 0.37664 * 5 4 3 7 7 C 1.50701 * 125.30619 * 179.89283 * 6 5 4 8 8 N 1.46899 * 109.47130 * 269.68617 * 7 6 5 9 9 C 1.46895 * 111.00004 * 169.99787 * 8 7 6 10 10 C 1.53239 * 109.36246 * 172.76085 * 9 8 7 11 11 H 1.09006 * 109.62903 * 294.11353 * 10 9 8 12 12 C 1.52991 * 109.63183 * 173.52747 * 10 9 8 13 13 N 1.47087 * 108.52019 * 53.81524 * 10 9 8 14 14 C 1.36939 * 120.87711 * 128.79105 * 13 10 9 15 15 H 1.07997 * 120.00301 * 333.38540 * 14 13 10 16 16 C 1.38817 * 119.99577 * 153.38406 * 14 13 10 17 17 N 1.31617 * 119.99771 * 343.02094 * 16 14 13 18 18 Si 1.86798 * 119.99957 * 163.02867 * 16 14 13 19 19 H 1.48497 * 109.46918 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47181 * 119.99579 * 18 16 14 21 21 H 1.48503 * 109.47134 * 239.99853 * 18 16 14 22 22 C 1.47076 * 118.23956 * 308.81827 * 13 10 9 23 23 H 1.09001 * 109.62960 * 170.88912 * 22 13 10 24 24 C 1.53004 * 109.62866 * 291.47535 * 22 13 10 25 25 C 1.46899 * 111.01758 * 45.68043 * 8 7 6 26 26 H 1.08995 * 109.47141 * 270.00718 * 1 2 3 27 27 H 1.08998 * 109.46625 * 30.00399 * 1 2 3 28 28 H 1.08991 * 109.47188 * 150.00357 * 1 2 3 29 29 H 1.08999 * 109.47276 * 149.68547 * 7 6 5 30 30 H 1.09000 * 109.47281 * 29.68689 * 7 6 5 31 31 H 1.08996 * 109.49441 * 52.79037 * 9 8 7 32 32 H 1.08995 * 109.49517 * 292.73715 * 9 8 7 33 33 H 1.08999 * 109.47512 * 59.99919 * 12 10 9 34 34 H 1.09001 * 109.47523 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.47295 * 300.00418 * 12 10 9 36 36 H 0.97008 * 120.00248 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47389 * 59.99886 * 24 22 13 38 38 H 1.09001 * 109.46719 * 180.02562 * 24 22 13 39 39 H 1.09002 * 109.46832 * 299.99770 * 24 22 13 40 40 H 1.09001 * 109.46932 * 67.26685 * 25 8 7 41 41 H 1.08994 * 109.51481 * 307.21680 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6083 0.6246 -0.0006 5 7 3.5710 -0.7936 0.0044 6 6 2.3213 -1.1499 -0.0005 7 6 1.8209 -2.5714 0.0000 8 7 1.6573 -3.0334 -1.3849 9 6 1.4009 -4.4790 -1.4307 10 6 1.0581 -4.8889 -2.8670 11 1 0.1130 -4.4331 -3.1622 12 6 0.9482 -6.4124 -2.9544 13 7 2.1319 -4.4192 -3.7557 14 6 2.7365 -5.2728 -4.6395 15 1 2.7689 -6.3320 -4.4311 16 6 3.3076 -4.7767 -5.8034 17 7 2.9920 -3.5721 -6.2296 18 14 4.5239 -5.8187 -6.7647 19 1 4.7078 -7.1233 -6.0797 20 1 4.0032 -6.0484 -8.1364 21 1 5.8280 -5.1126 -6.8421 22 6 2.5394 -3.0087 -3.6697 23 1 3.4404 -2.8510 -4.2625 24 6 1.4125 -2.1153 -4.1922 25 6 2.8238 -2.6729 -2.2018 26 1 -0.3633 0.0001 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5137 29 1 0.8611 -2.6186 0.5145 30 1 2.5401 -3.2096 0.5133 31 1 0.5653 -4.7212 -0.7742 32 1 2.2899 -5.0168 -1.1013 33 1 0.1635 -6.7592 -2.2820 34 1 0.7048 -6.7011 -3.9769 35 1 1.8983 -6.8624 -2.6665 36 1 3.3914 -3.2251 -7.0427 37 1 0.5170 -2.2707 -3.5906 38 1 1.7174 -1.0708 -4.1277 39 1 1.2006 -2.3681 -5.2311 40 1 3.6933 -3.2354 -1.8618 41 1 3.0205 -1.6053 -2.1044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878773418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:35 Heat of formation + Delta-G solvation = 128.701386 kcal Electronic energy + Delta-G solvation = -23371.958019 eV Core-core repulsion = 20099.475950 eV Total energy + Delta-G solvation = -3272.482069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50822 -38.65426 -35.47150 -34.04419 -32.92297 -32.37071 -31.21064 -28.81407 -28.17257 -27.03157 -26.07508 -24.22346 -22.69150 -21.88896 -21.07400 -20.14810 -18.63427 -16.84029 -16.48407 -16.06394 -15.29528 -15.01652 -14.66022 -14.55799 -14.14005 -13.84314 -13.47873 -13.41956 -13.24262 -13.08662 -12.79222 -12.17396 -11.94155 -11.72100 -11.68763 -11.56193 -11.32434 -11.09505 -10.95865 -10.79407 -10.62343 -10.57850 -10.49408 -10.46408 -10.04443 -9.96470 -9.50324 -9.27897 -8.49601 -8.00195 -6.66117 -5.77096 -3.18567 0.55714 1.95664 2.70159 3.15799 3.37145 3.45815 3.46651 3.87092 4.25321 4.48973 4.64477 4.91147 5.14753 5.22463 5.23238 5.29067 5.39004 5.43466 5.61116 5.70929 5.78460 5.83814 5.97185 6.03104 6.17664 6.25062 6.26805 6.36952 6.55248 6.78579 6.90006 6.96509 6.97218 7.04165 7.18430 7.31423 7.36784 7.69853 7.79326 7.92862 8.44475 9.22914 9.85430 10.42510 11.30454 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.005485 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.459033 B = 5103.401215 C = 5638.652295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.092 3.908 3 N -0.286 5.286 4 O 0.019 5.981 5 N -0.270 5.270 6 C 0.089 3.911 7 C 0.112 3.888 8 N -0.520 5.520 9 C 0.049 3.951 10 C 0.172 3.828 11 H 0.036 0.964 12 C -0.137 4.137 13 N -0.584 5.584 14 C -0.250 4.250 15 H 0.072 0.928 16 C 0.002 3.998 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.200 3.800 23 H 0.096 0.904 24 C -0.134 4.134 25 C 0.037 3.963 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.252 0.748 37 H 0.033 0.967 38 H 0.017 0.983 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 2.372 12.956 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 N -0.032 5.032 4 O -0.121 6.121 5 N -0.014 5.014 6 C -0.094 4.094 7 C -0.017 4.017 8 N -0.246 5.246 9 C -0.080 4.080 10 C 0.065 3.935 11 H 0.053 0.947 12 C -0.195 4.195 13 N -0.308 5.308 14 C -0.379 4.379 15 H 0.089 0.911 16 C -0.196 4.196 17 N -0.542 5.542 18 Si 0.728 3.272 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.093 3.907 23 H 0.113 0.887 24 C -0.193 4.193 25 C -0.092 4.092 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.036 0.964 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.139 3.505 12.611 14.457 hybrid contribution 0.934 -1.132 -0.232 1.486 sum -5.205 2.373 12.379 13.637 Atomic orbital electron populations 1.20592 0.84167 1.05991 1.04265 1.24549 1.00395 0.88693 0.95447 1.79886 0.89179 1.19807 1.14377 1.93375 1.20259 1.13720 1.84697 1.80003 1.17779 0.91102 1.12531 1.24482 0.89642 0.99264 0.96052 1.20895 1.01012 0.85874 0.93889 1.62244 1.40416 1.16189 1.05797 1.22759 0.99385 0.85533 1.00350 1.20453 0.92220 0.92873 0.87938 0.94682 1.21798 1.00201 0.95895 1.01655 1.44295 1.38022 1.06605 1.41830 1.19221 1.29958 0.90925 0.97823 0.91056 1.25008 1.01250 0.97087 0.96292 1.70013 1.43835 1.17430 1.22942 0.86295 0.81386 0.79762 0.79741 1.20421 1.21837 1.21735 1.20380 0.98389 0.83460 0.88428 0.88659 1.21948 0.98510 0.96195 1.02631 1.23000 0.89835 0.98651 0.97694 0.88997 0.89396 0.87745 0.87843 0.92390 0.91589 0.94864 0.94139 0.91733 0.92899 0.93808 0.94752 0.96385 0.90681 0.95243 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.05 36.01 0.36 -0.41 16 2 C 0.09 1.17 7.19 -82.38 -0.59 0.58 16 3 N -0.29 -4.35 12.98 33.74 0.44 -3.92 16 4 O 0.02 0.33 13.71 12.03 0.16 0.50 16 5 N -0.27 -4.48 12.01 33.74 0.41 -4.07 16 6 C 0.09 1.25 4.97 -82.38 -0.41 0.84 16 7 C 0.11 1.40 5.44 -4.98 -0.03 1.38 16 8 N -0.52 -8.29 4.26 -235.77 -1.00 -9.29 16 9 C 0.05 0.78 4.87 -3.70 -0.02 0.76 16 10 C 0.17 3.31 3.26 -67.49 -0.22 3.09 16 11 H 0.04 0.71 7.63 -51.93 -0.40 0.32 16 12 C -0.14 -2.38 7.93 37.15 0.29 -2.08 16 13 N -0.58 -13.70 2.73 -157.00 -0.43 -14.12 16 14 C -0.25 -6.46 8.72 -15.06 -0.13 -6.60 16 15 H 0.07 1.81 6.16 -52.49 -0.32 1.49 16 16 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 17 N -0.90 -24.99 9.78 55.49 0.54 -24.44 16 18 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.20 4.62 2.35 -67.49 -0.16 4.46 16 23 H 0.10 2.56 6.12 -51.93 -0.32 2.25 16 24 C -0.13 -2.98 8.96 37.16 0.33 -2.65 16 25 C 0.04 0.73 4.52 -3.70 -0.02 0.71 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 0.84 7.77 -51.93 -0.40 0.43 16 29 H 0.10 0.93 7.78 -51.93 -0.40 0.53 16 30 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.22 7.57 -51.93 -0.39 0.83 16 35 H 0.05 0.94 7.54 -51.93 -0.39 0.55 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 1.10 5.89 -51.93 -0.31 0.79 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -29.45 323.38 -6.88 -36.33 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.17 Total: -2.23 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.67 Total: 0.05 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.05 Total: -55.85 kcal Atomic # 8 Polarization: 0.33 SS G_CDS: 0.16 Total: 0.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.45 -6.88 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878773418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.029 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds